• Mass Spectrometry Letters
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• v.4 no.1
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• pp.1-9
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• 2013

Fungal biotechnology has been well established in food and healthcare sector, and now being explored for lignocellulosic biorefinery due to their great potential to produce a wide array of extracellular enzymes for nutrient recycling. Due to global warming, environmental pollution, green house gases emission and depleting fossil fuel, fungal enzymes for lignocellulosic biomass refinery become a major focus for utilizing renewal bioresources. Proteomic technologies tender better biological understanding and exposition of cellular mechanism of cell or microbes under particular physiological condition and are very useful in characterizing fungal secretome. Hence, in addition to traditional colorimetric enzyme assay, mass-spectrometry-based quantification methods for profiling lignocellulolytic enzymes have gained increasing popularity over the past five years. Majority of these methods include two dimensional gel electrophoresis coupled to mass spectrometry, differential stable isotope labeling and label free quantitation. Therefore, in this review, we reviewed more commonly used different proteomic techniques for profiling fungal secretome with a major focus on two dimensional gel electrophoresis, liquid chromatography-based quantitative mass spectrometry for global protein identification and quantification. We also discussed weaknesses and strengths of these methodologies for comprehensive identification and quantification of extracellular proteome.

• Journal of the Korean Magnetic Resonance Society
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• v.23 no.4
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• pp.93-97
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• 2019

Black ginger (Kaempferia parviflora) is a short-lived ginger plant with dark purple colored root and is known to be effective in treating diabetes and obesity. To find out the difference in the characteristics of the black ginger according to the variety of production, 1D proton NMR experiments were performed on 4 types of black gingers from different regions. The NMR spectra of all black ginger showed the characteristic peaks of the polymethoxy flavone compounds, and the chemical shifts and intensity of peaks showed slight differences depending of the type of black ginger implying the difference in molecular environment. These initial NMR experiments can be applied to the identification of the diversity of black ginger in physiological function according to the climate of regions using SNIF-NMR (Site-specific Natural Isotope Fractionation studied by NMR).

• 대한방사선방어학회:학술대회논문집
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• 2011.04a
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• pp.44-45
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• 2011

• Journal of Plant Biotechnology
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• v.37 no.2
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• pp.196-204
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• 2010

With the completion of genome sequencing of several organisms, attention has been focused to determine the function and functional network of proteins by proteome analysis. The recent techniques of proteomics have been advanced quickly so that the high-throughput and systematic analyses of cellular proteins are enabled in combination with bioinformatics tools. Furthermore, the development of proteomic techniques helps to elucidate the functions of proteins under stress or diseased condition, resulting in the discovery of biomarkers responsible for the biological stimuli. Ultimate goal of proteomics orients toward the entire proteome of life, subcellular localization, biochemical activities, and their regulation. Comprehensive analysis strategies of proteomics can be classified as three categories: (i) protein separation by 2-dimensional gel electrophoresis (2-DE) or liquid chromatography (LC), (ii) protein identification by either Edman sequencing or mass spectrometry (MS), and (iii) quanitation of proteome. Currently MS-based proteomics turns shiftly from qualitative proteome analysis by 2-DE or 2D-LC coupled with off-line matrix assisted laser desorption ionization (MALDI) and on-line electrospray ionization (ESI) MS, respectively, to quantitative proteome analysis. Some new techniques which include top-down mass spectrometry and tandem affinity purification have emerged. The in vitro quantitative proteomic techniques include differential gel electrophoresis with fluorescence dyes, protein-labeling tagging with isotope-coded affinity tag, and peptide-labeling tagging with isobaric tags for relative and absolute quantitation. In addition, stable isotope labeled amino acid can be in vivo labeled into live culture cells through metabolic incorporation. MS-based proteomics extends to detect the phosphopeptide mapping of biologically crucial protein known as one of post-translational modification. These complementary proteomic techniques contribute to not only the understanding of basic biological function but also the application to the applied sciences for industry.

• Korean Journal of Microbiology
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• v.53 no.2
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• pp.71-78
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• 2017

Raman microspectroscopy is a promising tool for microbial analysis at single cell level since it can rapidly measure the cell materials including lipids, nucleic acids, and proteins by measuring the inelastic scattering of a molecule irradiated by monochromatic lights. Using Raman spectra provides high specificity and sensitivity in classification of bacteria at the strain level. In addition, a Raman approach coupled with stabled isotope such as $^{13}C$ and $^2H$ is able to detect and quantify general metabolic activity at single cell level. After bacterial detection process by Raman microspectroscopy, interested unculturable cell sorting and single cell genomics can be accomplished by combination with optical tweezer and microfluidic devices. In this review, the characteristics and applications of Raman microspectroscopy were reviewed and summarized in order to provide a better understanding of microbial analysis using Raman spectroscopy.

• Nuclear Engineering and Technology
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• v.54 no.12
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• pp.4636-4643
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• 2022

A time-of-flight and energy (TOF-E) detection system for the measurement of ²³⁶U accelerator mass spectrometry (AMS) has been developed to improve the ²³⁶U/²³⁸U sensitivity at Micro Analysis Laboratory, Tandem accelerator (MALT), The University of Tokyo. With observing TOF distribution of ²³⁵U, ²³⁶U and ²³⁸U, this TOF-E detection system has clearly separated ²³⁶U from the interference of ²³⁵U and ²³⁸U when measuring three kinds of uranium standards. In addition, we have developed a novel method combining kernel-based density estimation method and multi-Gaussian fitting method to estimate the ²³⁶U/²³⁸U sensitivity of the TOF-E detection system. Using this new estimation method, 3.4 × 10^-12 of ²³⁶U/²³⁸U sensitivity and 1.9 ns of time resolution are obtained. ²³⁶U/²³⁸U sensitivity of TOF-E detection system has improved two orders of magnitude better than that of previous gas ionization chamber. Moreover, unknown species other than uranium isotopes were also observed in the measurement of a surface soil sample, which has demonstrated that TOF-E detection system has a higher sensitivity in particle identification. With its high sensibility in mass determination, this TOF-E detection system could also be used in other heavy isotope AMS.

• Nuclear Engineering and Technology
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• v.54 no.3
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• pp.1037-1048
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• 2022

A radioactive isotope identification algorithm is a prerequisite for a low-resolution scintillation detector applied to an unmanned radiation monitoring system. In this paper, a sparse representation with dictionary learning approach is proposed and applied to plastic gamma-ray spectra. Label-consistent K-SVD was used to learn a discriminative dictionary for the spectra corresponding to a mixture of four isotopes (¹³³Ba, ²²Na, ¹³⁷Cs, and ⁶⁰Co). A Monte Carlo simulation was employed to produce the simulated data as learning samples. Experimental measurement was conducted to obtain practical spectra. After determining the hyper parameters, two dictionaries tailored to the learning samples were tested by varying with the source position and the measurement time. They achieved average accuracies of 97.6% and 98.0% for all testing spectra. The average accuracy of each dictionary was above 96% for spectra measured over 2 s. They also showed acceptable performance when the spectra were artificially shifted. Thus, the proposed method could be useful for identifying radioisotopes in gamma-ray spectra from a plastic scintillation detector even when a dictionary is adapted to only simulated data. Furthermore, owing to the outstanding properties of sparse representation, the proposed approach can easily be built into an insitu monitoring system.

• The Korean Journal of Quaternary Research
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• v.17 no.2
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• pp.15-15
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• 2003

In South Korea, marine terraces have been well developed along the eastern coastal zone, and previous researches on the marine terraces have also been focused on to this coastal zone. The marine terraces of the eastern coast of South Korea had been classified into three terrace groups, that is, the higher, middle, and lower surface ones, according to the heights of marine terraces by previous studies(Oh, 1981 ;Chang, 1987 ;Yoon et. al, 1999, 2003 ; Hwang and Yoon, 1996 etc.). Recently, however, it tends to classify the marine terraces based on the concept of geomorphic surface units(Lee, 1987 ; Kim, 1990 ; Choi, S. 2003; Choi S. et. al 2003a,b, etc). For example, it was proposed that the marine terrace surfaces of Eupcheon coast of the southeastern coastal area of Korea could be classified into 16 geomorphic surfaces, i.e., Eupcheon 1terrace(former shoreline height of 160m), 2(153m), 3(140m), 4(130m), 5(124m), 6(115m), 7(100m), 8(92m), 9(82m), 10(71m), 11(62m), 12(53m), 13(43m), 14(35m), 15(18m) and 16(10m) surfaces, in descending order, according to the former shoreline heights(Choi, S, 2003 ; Choi, S. et. al, 2003a,b). Among these terraces, Eupcheon 1, 2, 4, 5 and 7 surfaces had not been reported in previous works. Among the above mentioned marine terraces, Eupcheon 15 terrace, the most widely and continuously distributed marine terrace have been identified as marine terrace of the Last Interglacial culmination period(oxygen isotope stage 5e) which was based on amino acid dates(124∼125ka BP) and geomorphological features such as red soil, pollen analysis, fossil cryogenic structures and crossing terrace concept. Eupoheon 15 terrace surfaces have also been proposed as the key surface for the identification and correlation of the so-called '5e' marine terrace in the eastern coast of South Korea. This terrace was reconfirmed as the Last Interglacial culmination period, which was based on the identification of Ata tephra, one of the wide-spread marker tephra which indicates the Last Interglacial culmination period in Japan by Sasaki et. al(2002). It was thought that marine terraces of the eastern coast of South Korea had been formed by the steady-state uplifting during the Quaternary glacio-eustatic sea level changes(Choi, 1997). The uprift rate of 10cm/1,000years had been proposed in the eastern coast of South Korea based on the former shoreline altitude(18m) of the above Eupcheon 15 terrace. Therefore, it can be estimated that Eupcheon 1 terrace had been formed in the early Pleistocene from the above uprift rate. The OSL dating for the samples of Eupcheon 7, 9, 13, 15 and 16 terraces and identification of marker tephra in the terrace deposits are in progress. It is expected that more elaborate chronology on themarine terraces of the eastern coast of South Korea could be established by these absolute dates and marker-tephra.

• Economic and Environmental Geology
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• v.41 no.3
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• pp.315-326
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• 2008

Recently, the occurrence and intensity of Asian Dust have dramatically increased in Korean peninsula, resulting in severe damages to the domestic social and economic field. The most useful way to prevent the damage of Asian Dust is the restraint of the occurrence of Asian Dust itself. However, Asian dust is the one of the natural phenomena, thus there is a basic limit to manage the Asian Dust. Though it is impossible to restrain the occurrence of Asian Dust in short time at present, it is a urgent matter to minimize the damage of Asian Dust. It is necessary to construct the basic data for understanding the harmfulness of Asian Dust, and to elucidate the source area of Asian Dust in connection with the maleficence of itself. In this study, the source area of Asian Dust in spring, 2007, is investigated using the Sr-Nd isotopic ratios which is the most common method to trace the source of geological materials. The relationships of Sr-Nd isotope ratios indicate that Asian Dust was originated from Central Loess Plateau and/or Ordos desert in spring, 2007.

• The Sea:JOURNAL OF THE KOREAN SOCIETY OF OCEANOGRAPHY
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• v.12 no.4
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• pp.315-327
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• 2007

This study investigated temporal and spatial variation of Pb and stable Pb isotopes accumulated in Ulleung Basin core sediments (4) using MC ICP/MS in order to identify the sources of anthropogenic Pb in the East/Japan Sea. Leached (1M HCl) Pb concentration and isotope ratios ($^{207}Pb/^{206}Pb\;and\;^{208}Pb/^{206}Pb$) were nearly constant during 300 yrs past than 1930, but increased up to twice in concentration and as much as 3.41% (1.70%) after 2000. On the other hand, residual Pb concentrations were nearly constant for past 400 yrs. The accumulation rates of anthropogenic Pb in the basin area were in the range of $3.1-3.5mg/m^2/yr$, which were similar levels to total atmospheric Pb deposition fluxes from 1990s to the present. In the slope area, more increase of anthropogenic Pb accumulation than the levels expected from mass accumulation rate could be found after the middle of 1990s. From the detailed evaluation for the temporal and spatial variation of accumulation rate and isotope ratios of anthropogenic Pb, we proposed probable sources and pathways of anthropogenic Pb. Pb emmision by coal burning from the China and Korea initiated the accumulation of anthropogenic Pb in the sediments of East/Japan Sea from 1930s. The accumulation of Pb increased by the addition of anti-nocking agents from both countries untill the beginning of 1990s, but from the middle of 1990s to the present, the phase-out of gasoline additives and the rapid increase of coal burning from the China maintained the atmospheric Pb levels in the Ulleung basin nearly similar to before. However, the local sources within this basin might take an important role in the rapid increase of anthropogenic Pb accumulation in slope areas from the middle of 1990s.