• Journal of Plant Biotechnology
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• v.46 no.2
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• pp.79-87
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• 2019

One of wild diploid Solanum species, Solanum chacoense, is one of the excellent resources for potato breeding because it is resistant to several important pathogens, but the species is not sexually compatible with potato (S. tuberosum) causing the limitation of sexual hybridization between S. tuberosum and S. chacoense. Therefore, diverse traits regarding resistance from the species can be introgressed into potato via somatic hybridization. After cell fusion, the identification of fusion products is crucial with molecular markers. In this study, S. chacoense specific markers were developed by comparing the chloroplast genome (cpDNA) sequence of S. chacoense obtained by NGS (next-generation sequencing) technology with those of five other Solanum species. A full length of the cpDNA sequence is 155,532 bp and its structure is similar to other Solanum species. Phylogenetic analysis resulted that S. chacoense is most closely located with S. commersonii. Sequence alignment with cpDNA sequences of six other Solanum species identified two InDels and 37 SNPs specific sequences in S. chacoense. Based on these InDels and SNPs regions, four markers for distingushing S. chacoense from other Solanum species were developed. These results obtained in this research could help breeders select breeding lines and facilitate breeding using S. chacoense in potato breeding.

• The Plant Pathology Journal
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• v.34 no.6
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• pp.480-489
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• 2018

Bitter rot caused by Colletotrichum species is a common fruit rotting disease of apple and one of the economically important disease in worldwide. In 2015 and 2016, distinct symptoms of bitter rot disease were observed in apple orchards in five regions of South Korea. In the present study, infected apples from these regions were utilized to obtain eighteen isolates of Colletotrichum spp. These isolates were identified and characterized according to their morphological characteristics and nucleotide sequence data of internal transcribed spacer regions and glyceraldehyde-3-phosphate-dehydrogenase. Molecular analyses suggested that the isolates of Colletotrichum causing the bitter rot disease in South Korea belong to 4 species: C. siamense; C. fructicola; C. fioriniae and C. nymphaeae. C. siamense and C. fructicola belonged to Musae Clade of C. gloeosporioides complex species while C. fioriniae and C. nymphaeae belonged to the Clade 3 and Clade 2 of C. acutatum complex species, respectively. Additionally, we also found that the isolates of C. gloeosporioides species-complex were more aggressive than those in the C. acutatum species complex via pathogenicity tests. Taken together, our results suggest that accurate identification of Colletotrichum spp. within each species complex is required for management of bitter rot disease on apple fruit in South Korea.

• Journal of the Korean Society of Fisheries and Ocean Technology
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• v.55 no.3
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• pp.233-242
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• 2019

Species composition and yearly variation of fish eggs and larval fishes were investigated from 2014 to 2016. During the study period, the fish eggs were identified as belonging to 14 taxa. The dominant species of fish eggs were Leiognathus nuchalis, Engraulis japonicus, and Konosirus punctatus. These three species accounted for 97.4% of the total number of individuals collected. The collected larval fishes were identified into 37 taxa, 22 families, and seven orders. The dominant species of larval fish were Leiognathus nuchalis, and Gobiidae fishes. These three species accounted for 85.4% of the total number of individuals collected. The diversity index of the larval fishes was the highest in 2014 (H' = 1.60) and the lowest in 2015 (H' = 1.15). The evenness index was the highest in 2016 (J = 0.51) and the lowest in 2015 (J = 0.39). The dominance index was the highest in 2015 (D = 83.5%) and the lowest in 2016 (D = 70.9%). In addition, the economically important species in this area were Engraulis japonicus, Konosirus punctatus, Hippocampus coronatus, Sebastes schlegelii, Acanthopagrus schlegeli, and Cynoglossus joyneri.

• Mycobiology
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• v.48 no.6
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• pp.431-442
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• 2020

Penicillium, the most common genus plays an important ecological role in various terrestrial and marine environments. However, only a few species have been reported from rhizosphere soil. As part of a project to excavate Korean indigenous fungi, we investigated rhizosphere soil of six plants in the forest (terrestrial habitat) and sand dunes (coastal habitat) and focused on discovering Penicillium species. A total of 64 strains were isolated and identified as 26 Penicillium species in nine sections based on morphological characteristics and the sequence analysis of β-tubulin and calmodulin. Although this is a small-scale study in a limited rhizosphere soil, eight unrecorded species and four potential new species have been identified. In addition, most Penicillium species from rhizosphere soil were unique to each plant. Penicillium halotolerans, P. scabrosum, P. samsonianum, P. jejuense, and P. janczewskii were commonly isolated from rhizosphere soil. Eight Penicillium species, P. aurantioviolaceum, P. bissettii, P. cairnsense, P. halotolerans, P. kananaskense, P. ortum, P. radiatolobatum, and P. verhagenii were recorded for the first time in Korea. Here, we provide the detailed morphological description of these unrecorded species.

• Journal of Ecology and Environment
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• v.45 no.1
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• pp.24-39
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• 2021

Background: To address the lack of evidence supporting invasion by three invasive plant species (Imperata cylindrica, Lantana camara, and Chromolaena odorata) in tropical ecosystems, we compared the ecophysiological and leaf anatomical traits of these three invasive alien species with those of species native to Sempu Island, Indonesia. Data on four plant traits were obtained from the TRY Plant Trait Database, and leaf anatomical traits were measured using transverse leaf sections. Results: Two ecophysiological traits including specific leaf area (SLA) and seed dry weight showed significant association with plant invasion in the Sempu Island Nature Reserve. Invasive species showed higher SLA and lower seed dry weight than non-invasive species. Moreover, invasive species showed superior leaf anatomical traits including sclerenchymatous tissue thickness, vascular bundle area, chlorophyll content, and bundle sheath area. Principal component analysis (PCA) showed that leaf anatomical traits strongly influenced with cumulative variances (100% in grass and 88.92% in shrubs), where I. cylindrica and C. odorata outperformed non-invasive species in these traits. Conclusions: These data suggest that the traits studied are important for plant invasiveness since ecophysiological traits influence of light capture, plant growth, and reproduction while leaf anatomical traits affect herbivory, photosynthetic assimilate transport, and photosynthetic activity.

• Journal of Forest and Environmental Science
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• v.33 no.1
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• pp.39-48
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• 2017

With the growing global concern about climate change, relationship between carbon stock density and tree species has become important for international climate change mitigation programmes. In this study, 150 Quadrats were laid down to assess the diversity, biomass and carbon stocks in each of the forest ranges (Barkot Range, Lachchiwala Range and Thano Range) of Dehra Dun Forest Division in Doon Valley, Western Himalaya, India. Community level carbon stock density was analyzed using Two Way Indicator Species Analysis. Species Richness and Shannon Weiner index was correlated with the carbon stocks of Doon Valley. Positive and weak relationship was found between the carbon stock density and Shannon Weiner Index, and between carbon stock density and Species Richness.

• Korean Journal of Environmental Biology
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• v.23 no.2 s.58
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• pp.93-97
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• 2005

Zooplankton dynamics were investigated based on samples collected monthly during the period between November 1998 and October 1999 at 15 stations in Gwangyang and Sachon Bay. Zooplankters were quantitatively collected with horizontal towing through the surface and oblique hauling from the bottom to surface at each station, simultaneously. A total of 88 taxa of zooplankton were distributed and 60 taxa were identified to species. Copepods showed the prosperity in species number of 52 species. Number of taxa occurred in samples hauled obliquely always showed $2\~5$ more species than those captured in the surface except for stations near the Namhae bridge. In waters near Namhae bridge, fast current seemed to mix waters vertically. Seasonally these differences were more distinct in the spring and summer than those in other seasons possibly due to the stratification in warmer seasons. In quantitative aspects, differences between two layers seemed to be obscure. Spatial and temporal variations in species diversity of copepods showed more prosperity in pelagic realm than those in the surface. Our collection carrying out in day time might be one of the important reason to cause these differences in zooplankton dynamics between two layers.

• The Korean Journal of Malacology
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• v.10 no.2
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• pp.1-9
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• 1994

Molluscs from the Neolithic shell middens (Sugari, Pudjeong, Tongsamdong, Sangnodaedo, Sandeung, Yondaedo, Songdo and Kupyongri) in the southern coast, Korea, consisted of marine, fresh-water and land molluscs. Among these, intertidal species were exploited most abundantly as food resources, indicating a high dependence of intertidal shellfish collection activities. Especially oysters were the most abundant in these sites except Tongsamdong where mussels were predominant, indicating oysters were the most important food resources. Land snails from the sites consisted of woodland and open land species. Woodland species were more abundant than openland species, suggesting that there was a woodland environmint around the sites. Marine and land mollusc species from the sites are common in these rigions today, indicating no large-scale emvironmental changes have occurred since these middens formation period.

• Journal of Species Research
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• v.6 no.spc
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• pp.148-151
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• 2017

Assocations of wingless mites with winged arthropods highlight important life history strategies and ecological interactions. Here we report a mesostigmatan mite species association with an earth-boring dung beetle. Mite spciemens were collected from the soil of organic apple orchards in the Province of Gyeongsangbuk-do, Republic of Korea, and cattle dung was collected from grassland in Mongolia. The species was identified as Alliphis necrophilus Christie, 1983 (Acari: Eviphididae). This is the first report of any species in the genus Alliphis in Korea. Some descriptive details and ecological remarks are also provided.

• Animal Systematics, Evolution and Diversity
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• v.21 no.2
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• pp.129-136
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• 2005

During the expedition of Uileunsdo Islands, Korea in September 2-4, 2004, a total of seven species were recognized. Of these, one species Amynthas dageletensis sp. nov. is described as new to science. Amynthas degeletensis sp. nov. lacks spermathecal pore, spermathecae, prostates, and male pore. These characteristics are systematically important and unique to the species among Korean members of Amynthas. Description of the new species is provided, including illustrations of ventral view and male pore region.