• Title/Summary/Keyword: ITS sequence

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Spoken Document Retrieval Based on Phone Sequence Strings Decoded by PVDHMM (PVDHMM을 이용한 음소열 기반의 SDR 응용)

  • Choi, Dae-Lim;Kim, Bong-Wan;Kim, Chong-Kyo;Lee, Yong-Ju
    • MALSORI
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    • no.62
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    • pp.133-147
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    • 2007
  • In this paper, we introduce a phone vector discrete HMM(PVDHMM) that decodes a phone sequence string, and demonstrates the applicability to spoken document retrieval. The PVDHMM treats a phone recognizer or large vocabulary continuous speech recognizer (LVCSR) as a vector quantizer whose codebook size is equal to the size of its phone set. We apply the PVDHMM to decode the phone sequence strings and compare the outputs with those of a continuous speech recognizer(CSR). Also we carry out spoken document retrieval experiment through PVDHMM word spotter on the phone sequence strings which are generated by phone recognizer or LVCSR and compare its results with those of retrieval through the phone-based vector space model.

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A Proposal on a Multiple-Cycle Binary Sequence Generator with a ST-LFSR

  • Lee, Hoon-Jae;Park, Hee-Bong
    • Journal of Korea Society of Industrial Information Systems
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    • v.7 no.5
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    • pp.67-72
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    • 2002
  • The number of keystream cycle sequences has been proposed as a characteristic of binary sequence generators for cryptographic applications, but in general most binary sequence generators have the only one-cycle sequence. In this paper, we propose a switching-tap LFSR as a basic function of a multiple-cycle binary sequence generator and the improved Rueppel's multiple-cycle generator. Finally we analyze its period, linear complexity, and the number of its keystream cycle sequences.

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Draft Genome Sequence of a Chitinase-producing Biocontrol Bacterium Serratia sp. C-1

  • Park, Seur Kee;Kim, Young Cheol
    • Research in Plant Disease
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    • v.21 no.3
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    • pp.222-226
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    • 2015
  • The chitinase-producing bacterial strain C-1 is one of the key chitinase-producing biocontrol agents used for effective bioformulations for biological control. These bioformulations are mixed cultures of various chitinolytic bacteria. However, the precise identification, biocontrol activity, and the underlying mechanisms of the strain C-1 have not been investigated so far. Therefore, we evaluated in planta biocontrol efficacies of C-1 and determined the draft genome sequence of the strain in this study. The bacterial C-1 strain was identified as a novel Serratia sp. by a phylogenic analysis of its 16S rRNA sequence. The Serratia sp. C-1 bacterial cultures showed strong in planta biocontrol efficacies against some major phytopathogenic fungal diseases. The draft genome sequence of Serratia sp. C-1 indicated that the C-1 strain is a novel strain harboring a subset of genes that may be involved in its biocontrol activities.

A Study on the Occurrence Cause of the Zero Sequence Voltage at Tertiary Side of 345[kV] Main Transformer (345[kV] 주변압기 3차측 영상전압 발생원인 분석 및 대책에 관한 연구)

  • Woo, Jung-Wook;Kweon, Dong-Jin
    • Journal of the Korean Institute of Illuminating and Electrical Installation Engineers
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    • v.24 no.9
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    • pp.150-158
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    • 2010
  • We had experienced the several system failures which were concerned about zero sequence voltages at the tertiary side of 345[kV] transformers. In this paper, we had considered the zero sequence voltage and its reduction methods at the 345[kV] auto-transformer tertiary. For analysis, we used EMTP(Electro-Magnetic Transients Program). The calculation results by EMTP were compared with the measured data of the field tests. From the calculation and the field tests, we had verified that it is due to pre-saturation characteristics of the potential transformer. So, we had improved its saturation characteristics and applied it at real site. After improvements, we could reduce the zero sequence voltage below the setting level of the relay.

Characterization of Sclerotinia sclerotiorum Isolated from Paprika

  • Jeon, Young-Jae;Kwon, Hyuk-Woo;Nam, Ji-Sun;Kim, Seong-Hwan
    • Mycobiology
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    • v.34 no.3
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    • pp.154-157
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    • 2006
  • A fungal isolate collected from infected paprika (Capsicum annuum var. grossum) was characterized as Sclerotinia sclerotiorum based on its ability of sclerotium formation, physiological and molecular properties. When the isolate was grown on potato dextrose agar, oatmeal agar, and malt extract agar, it grew most well on PDA. Optimal temperature and pH for its growth were $25^{\circ}C$ and pH 7, respectively. The fungal isolate produced sclerotia on PDA within 10 days, and the color and shape of the sclerotia were similar to those of S. sclerotiorum. The ITS rDNA regions including ITS1 and ITS2 and 5.8S sequences were amplified using ITS1F and ITS4 primers from the genomic DNAs of the paprika isolate and other known pathogenic S. sclerotiorum isolated from different crops in Korea, and their nucleotide sequences were determined. Sequence comparison analysis showed the ITS rDNA of the paprika isolate shares 100% sequence identity with those of S. sclerotiorum isolated from red pepper, lettuce and a S. sclerotiorum isolate registered in GenBank DNA database. Neighbor joining analysis based on the ITS rDNA sequence revealed the paprika isolate has very close phylogenetic relationships with known Sclerotinia sclerotiorum isolates. This is the first report that S. sclerotiorum has been found associated with paprika rot in paprika growing countries.

Converting Panax ginseng DNA and chemical fingerprints into two-dimensional barcode

  • Cai, Yong;Li, Peng;Li, Xi-Wen;Zhao, Jing;Chen, Hai;Yang, Qing;Hu, Hao
    • Journal of Ginseng Research
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    • v.41 no.3
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    • pp.339-346
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    • 2017
  • Background: In this study, we investigated how to convert the Panax ginseng DNA sequence code and chemical fingerprints into a two-dimensional code. In order to improve the compression efficiency, GATC2Bytes and digital merger compression algorithms are proposed. Methods: HPLC chemical fingerprint data of 10 groups of P. ginseng from Northeast China and the internal transcribed spacer 2 (ITS2) sequence code as the DNA sequence code were ready for conversion. In order to convert such data into a two-dimensional code, the following six steps were performed: First, the chemical fingerprint characteristic data sets were obtained through the inflection filtering algorithm. Second, precompression processing of such data sets is undertaken. Third, precompression processing was undertaken with the P. ginseng DNA (ITS2) sequence codes. Fourth, the precompressed chemical fingerprint data and the DNA (ITS2) sequence code were combined in accordance with the set data format. Such combined data can be compressed by Zlib, an open source data compression algorithm. Finally, the compressed data generated a two-dimensional code called a quick response code (QR code). Results: Through the abovementioned converting process, it can be found that the number of bytes needed for storing P. ginseng chemical fingerprints and its DNA (ITS2) sequence code can be greatly reduced. After GTCA2Bytes algorithm processing, the ITS2 compression rate reaches 75% and the chemical fingerprint compression rate exceeds 99.65% via filtration and digital merger compression algorithm processing. Therefore, the overall compression ratio even exceeds 99.36%. The capacity of the formed QR code is around 0.5k, which can easily and successfully be read and identified by any smartphone. Conclusion: P. ginseng chemical fingerprints and its DNA (ITS2) sequence code can form a QR code after data processing, and therefore the QR code can be a perfect carrier of the authenticity and quality of P. ginseng information. This study provides a theoretical basis for the development of a quality traceability system of traditional Chinese medicine based on a two-dimensional code.

Molecular identification of medicinal herbs, Oldenlandia diffusa and Oldenlandia corymbosa based on nrDNA ITS region sequence

  • Sun, Yan-Lin;Wang, Dong;Yeom, Myung-Hun;Kim, Duck-Hee;Kim, Han-Gon;Hong, Soon-Kwan
    • Journal of Plant Biotechnology
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    • v.38 no.4
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    • pp.301-307
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    • 2011
  • The medicinal herb Oldenlandia diffusa is known as a folk medicine for the treatment of hepatitis, sore throat, appendicitis, malignant tumors and urethral infection in Southern China and Korea. Another species O. corymbosa, is also used for the therapy of the similar conditions, however, only O. diffusa is referred to the medicinal herb by Chinese Pharmacopoeia. Due to their similar morphology, O. diffusa and O. corymbosa are often misidentified. To easily identify O. diffusa from O. corymbosa, the phylogenetic utility of nuclear ribosomal DNA (nrDNA) internal transcribed spacers (ITS) were investigated among different O. diffusa and O. corymbosa populations in Korea. The nrDNA ITS sequence of O. diffusa contained 791 bp, with GenBank accession number of JF837601-JF837602. The nrDNA ITS sequence of O. corymbosa was 785-786 bp, with GenBank accession number of JF837603-JF837611. The results showed that there are some certain divergences in the ITS region sequence between both species, even among different populations of the same species. Particularly, O. corymbosa ST-4 population showed the highest dissimilarity of the ITS region sequence with other nine populations of O. corymbosa and two populations of O. diffusa. This consequence makes us further understand the molecular diversification between O. corymbosa and O. diffusa, and help to promote the correct use and safety.

A MODIFIED POLYNOMIAL SEQUENCE OF THE CHEBYSHEV POLYNOMIALS OF THE SECOND KIND

  • Kim, Seon-Hong
    • Communications of the Korean Mathematical Society
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    • v.34 no.2
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    • pp.429-437
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    • 2019
  • Dilcher and Stolarsky [1] recently studied a sequence resembling the Chebyshev polynomials of the first kind. In this paper, we follow their some research directions to the Chebyshev polynomials of the second kind. More specifically, we consider a sequence resembling the Chebyshev polynomials of the second kind in two different ways, and investigate its properties including relations between this sequence and the sequence studied in [1], zero distribution and the irreducibility.

Biogeography and Distribution Pattern of a Korean Wood-eating Cockroach Species, Cryptocercus kyebangensis, Based on Genetic Network Analysis and DNA Sequence Information

  • Park, Yung-Chul;Choe, Jae-Chun
    • Journal of Ecology and Environment
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    • v.30 no.4
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    • pp.331-340
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    • 2007
  • We examined the evolutionary and ecological processes shaping current geographical distributions of a Korean wood-eating cockroach species, Cryptocercus kyebangensis. Our research aims were to understand evolutionary pattern of DNA sequences, to construct genetic network of Cryptocercus kyebangensis local populations and to understand evolutionary and ecological processes shaping their current geographical distribution patterns via DNA sequence information and genetic networks, using sequence data of two genes (ITS-2 and AT region) from local populations of C. kyebangensis. The results suggest that the ITS-2 and AT region are appropriate molecular markers for elucidating C. kyebangensis geographic patterns at the population level. The MSN-A based on the ITS-2 showed two possible routes, the Hwaak-san and Myeongji-san route and the Seorak-san and Gyebang-san route, for migration of ancestral C. kyebangensis into South Korea. The MSNs (MSN-A and -B) elucidate migration routes well within South Korea, especially the route of Group I and Group II.

A STUDY ON MAGNETIC RESONANCE IMAGING OF THE TEMPOROMANDIBULAR JOINT (악관절에 대한 자기 공명 영상의 연구)

  • Kim Hyung Sik;Kim Jae Duk
    • Journal of Korean Academy of Oral and Maxillofacial Radiology
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    • v.20 no.2
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    • pp.187-198
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    • 1990
  • Examinations of the temporomandibular joints were performed on a 1.5 Tesla magnetic resonance (MR) system. An MR surface receiver coil 3 inch in diameter was placed on plastic frame, the patient's head being placed in the frame so that the coil was pressed against the temporal region. In taking advantage of the magnetic resonance imaging that has been studied briskly till now, author obtained the images of parasagittal and paracoronal planes about the temporomandibular joint by using MPGR (Multi-Planar Gradient Recalled), GRASS (Gradient Recalled Acquisition in the Steady State), and CSMEMP (Contiguous Slice Multiple Echo, Multi-Planar), that differ from the Spin Echo pulse sequence which the previous authors used. Five subjects with no symptoms of temporomandibular joint pain and dysfunction were studied. The plane images obtained by these methods were compared with those by Spin Echo pulse sequence. The results were as follows: 1. The optimal repetition times (TR) and echo times (TE) for T.M.J. image were; a. 400 msec and 18 msec in PMGR pulse sequence. b. 40 msec and 12 msec in GRASS pulse sequence. c. 700 msec and 30 msec in CSMEMP pulse sequence. d. 500 msec and 20 msec in Spin Echo pulse sequence. 2. When the MPGR pulse sequence was using, T2-weighted image was obtained in very short time. On the image of the paracoronal plane by GRASS pulse sequence, meniscus showed the moderate signal intensity, and the meniscus and its anteromedial, posterolateral attachments were observed definitely with gray color. 4. The signal intensity of Spin Echo pulse sequence was equal to that of CSMEMP pulse sequence, but the image by CSMEMP pulse sequence showed relatively lower level in its resolution.

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