• Molecules and Cells
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• 제25권3호
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• pp.352-357
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• 2008

Osteoprotegerin (OPG) is a soluble decoy receptor that inhibits osteoclastogenesis and is closely associated with bone resorption processes. We have designed and determined the solution structures of potent OPG analogue peptides, derived from sequences of the cysteine-rich domain of OPG. The inhibitory effects of the peptides on osteoclastogenesis are dose-dependent ($10^{-6}M-10^{-4}M$), and the activity of the linear peptide at $10^{-4}M$ is ten-fold higher than that of the cyclic OPG peptide. Both linear and cyclic peptides have a ${\beta}$-turn-like conformation and the cyclic peptide has a rigid conformation, suggesting that structural flexibility is an important factor for receptor binding. Based on structural and biochemical information about RANKL and the OPG peptides, we suggest that complex formation between the peptide and RANKL is mediated by both hydrophobic and hydrogen bonding interactions. These results provide structural insights that should aid in the design of peptidyl-mimetic inhibitors for treating metabolic bone diseases caused by abnormal osteoclast recruitment.

• Environmental Engineering Research
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• 제24권4호
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• pp.608-617
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• 2019

The adsorption of sulfamethoxazole (SMX) onto a NaOH-activated pine wood-derived biochar was investigated via batch experiments and models. Surprisingly, the maximum adsorption capacity of activated biochar for SMX (397.29 mg/g) was superior than those of pristine biochars from various feedstock, but comparable to those of commercially available activated carbons. Elovich kinetic and Freundlich isotherm models revealed the best fitted ones for the adsorption of SMX onto the activated biochar indicating chemisorptive interaction occurred on surface of the activated biochar. In addition, the intraparticle diffusion limitation was thought to be the major barrier for the adsorption of SMX on the activated biochar. The main mechanisms for the activated biochar would include hydrophobic, π-π interactions and hydrogen bonding. This was consistent with the changes in physicochemical properties of the activated biochar (e.g., increase in sp² and surface area, but decrease in the ratios of O/C and H/C).

• 한국응용과학기술학회지
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• 제28권2호
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• pp.232-239
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• 2011

Fabric fibrous filter has been used in various industrial applications owing to the low cost and wide generality. However, the basic properties of fabric materials often limit the practical utilization including hot gas cleaning. This study attempts to find new coatings of porous fibrous filter media in order to overcome its insufficient thermal resistance and durability. Teflon was one of the plausible chemicals to supplement the vulnerability against frequent external thermal impacts. A foaming agent composed of Teflon and some organic additives was tentatively coated on the glass fiber mat. The present test Teflon foam coated filter was fount to be useful for hot gas cleaning, up to $250^{\circ}C$-$300^{\circ}C$. Close examination using XPS(X-ray Photoelectron Spectroscopy) and Contact angle proved the binding interactions between carbon and fluorine, which implies coating stability. The PTFE/Glass foam coated filter consisted of more than 95% (C-F)n bond, and showed super-hydrophobic with good-oleophobic characteristics. The contact angle of liquid droplets on the filter surface enabled to find the filter wet-ability against liquid water or oil.

• Bulletin of the Korean Chemical Society
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• 제31권10호
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• pp.2877-2883
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• 2010

The folding kinetics of $WT^*$ ubiquitin variant with valine to alanine mutation at sequence position 26 (HubWA) was studied by stopped-flow fluorescence spectroscopy. While unfolding kinetics showed a single exponential phase, refolding reaction showed three exponential phases. The semi-logarithmic plot of urea concentration vs. rate constant for the first phase showed v-shape pattern while the second phase showed v-shape with roll-over effect at low urea concentration. The rate constant and the amplitude of the third phase were constant throughout the urea concentrations, suggesting that this phase represents parallel process due to the configurational isomerization. Interestingly, the first and second phases appeared to be coupled since the amplitude of the second phase increased at the expense of the amplitude of the first phase in increasing urea concentrations. This observation together with the roll-over effect in the second folding phase indicates the presence of intermediate state during the folding reaction of HubWA. Quantitative analysis of Hub-WA folding kinetics indicated that this intermediate state is on the folding pathway. Folding kinetics measurement of a mutant HubWA with hydrophobic core residue mutation, Val to Ala at residue position 17, suggested that the intermediate state has significant amount of native interactions, supporting the interpretation that the intermediate is on the folding pathway. It is considered that HubWA is a useful model protein to study the contribution of residues to protein folding process using folding kinetics measurements in conjunction with protein engineering.

• Bulletin of the Korean Chemical Society
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• 제24권5호
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• pp.547-551
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• 2003

In the present work, the interaction of three water soluble porphyrins, tetra(p-trimethyle) ammonium phenyl porphyrin iodide (TAPP) as a cationic porphyrin, tetra sodium meso-tetrakis (p-sulphonato phenyle) porphyrin (TSPP) as an anionic porphyrin and manganese tetrakis (p-sulphonato phenyl) porphinato acetate (MnTSPP) as a metal porphyrin, with histone H₂B have been studied by isothermal titration microcalorimetry at 8 mM phosphate buffer, pH 6.8 and 27 °C. The values of binding constant, entropy, enthalpy and Gibbs free energy changes for binding of the first MnTSPP, and first and second TSPP and TAPP molecules were estimated from microcalorimetric data analysis. The results represent that the process is both entropy and enthalpy driven and histone induces self-aggregation of the porphyrins. The results indicate that both columbic and hydrophobic interactions act as self-aggregation driving forces for the formation of aggregates around histone.

• 한국전기전자재료학회:학술대회논문집
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• 한국전기전자재료학회 2001년도 추계학술대회 논문집
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• pp.3-6
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• 2001

In common globular proteins, the native form is in its most stable state. However, the native form of inhibitory serpins (serine protease inhibitors) and some viral membrane fusion proteins is in a metastable state. Metastability in these Proteins is critical to their biological functions. Our previous studies revealed that unusual interactions, such as side-chain overpacking, buried polar groups, surface hydrophobic pockets, and internal cavities are the structural basis of the native metastability. To understand the mechanism by which these structural defects regulate protein functions, cavity-filling mutations of ${\alpha}$1-antitrypsin, a prototype serpin, were characterized. Increasing conformational stability is correlated with decreasing inhibitory activity. Moreover, the activity loss appears to correlate with the decrease in the rate of the conformational switch during complex formation with a target protease. We also increased the stability of ${\alpha}$1-antitrypsin greatly via combining various stabilizing single amino acid substitutions that were distributed throughout the molecule. The results showed that a substantial increase of stability, over 13 kcal/mol, affected the inhibitory activity with a correlation of 11% activity loss per kcal/mol. The results strongly suggest that the native metastability of proteins is indeed a structural design that regulates protein functions and that the native strain of e 1-antitrypsin distributed throughout the molecule regulates the inhibitory function in a concerted manner.

• 대한화학회지
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• 제67권2호
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• pp.81-88
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• 2023

HubWA 단백질을 모델로 삼아 소수성 아미노산이 folding 반응에 끼치는 영향을 탐색하기 위하여 HubWA에 있는 I와 L을 V로 치환한 변이 단백질의 folding kinetics를 측정하였다. 변이 단백질의 folding kinetics는 HubWA 단백질과 마찬가지로 three-state on-pathway mechanism(U ⇌ I ⇌ N, U는 unfolded 상태, I는 중간단계, N은 native 상태를 의미한다)을 따르는 것으로 나타났다. Folding kinetics 분석을 통하여 three-state 반응의 elementary 반응과 전체 반응의 자유에너지인 ΔG^o_UI, ΔG^o_IN, ΔG^o_UN을 얻었고, 변이 단백질의 자유에너지와 HubWA 단백질의 자유에너지의 차(ΔΔG^o_UI = ΔG^o_UI(변이 단백질) - ΔG^o_UI(HubWA), ΔΔG^o_UN = ΔG^o_UN(변이 단백질) - ΔG^o_UN(HubWA))의 비인 ΔΔG^o_UI/ΔΔG^o_UN를 통하여 중간단계가 전체 folding 반응에 끼치는 영향을 각 소수성 잔기 별로 알아볼 수 있었다. HubWA의 입체구조에서 α-helix와 β-sheet가 상호작용하는 소수성 코어에 위치하는 아미노산인 I3, I13, L15, I30, L43, I61, L67을 V로 치환한 변이 단백질의 ΔΔG^o_UI/ΔΔG^o_UN 값이 ~0.5로 나타난 점은 이들 아미노산이 중간단계에서 native 상태보다는 느슨하지만 비교적 견고한 구조를 이루는 것으로 해석되었다. HubWA 입체구조에서 α-helix의 아미노말단에 위치하는 I23, 특정 이차구조가 없는 부위에 위치하는 I36, β-strand 5의 카복실말단에 위치하는 L69를 V로 치환한 변이 단백질의 ΔΔG^o_UI/ΔΔG^o_UN 값이 0.4 이하로 나타난 것은 이들 아미노산 잔기가 중간단계에서는 비교적 느슨한 구조를 이루다 중간단계에서 native 단계로 진행하는 folding 과정의 후반부에 HubWA의 입체구조에 견고하게 편입되는 것으로 해석되었다. HubWA의 입체구조에서 두 번째 β-strand의 카복실말단에 위치한 V17, 짧은 네 번째 β-strand의 카복실말단에 위치한 L50, 짧은 3₁₀-helix의 아미노말단에 위치한 L56이 중간단계에서 서로 상호작용을 하는 점은 이들 아미노산을 V로 치환한 변이 단백질의 ΔΔG^o_UI/ΔΔG^o_UN값이 0.8 이상으로 나타난 점을 통하여 알 수 있었다. L50과 L56은 짧은 β-strand와 3₁₀-helix를 제외하고 특별한 이차구조가 존재하지 않는 부위(46번째 아미노산 잔기부터 62번째 아미노산 잔기 까지)에 위치하는데, 이들 아미노산이 V17과 더불어 folding 반응의 초기에 견고하게 상호작용을 하는 것은 HubWA단백질이 folding 과정의 초기에 응집체를 형성하는 것을 막아주는 역할을하는 것으로 생각되었다.

• 한국광물학회지
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• 제23권3호
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• pp.235-242
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• 2010

동원 NMC 선광장의 부유선별 프로세스를 유지하면서 광미여과액을 순환수로 활용하기 위한 pH 조절 연구를 수행하였다. 휘수연석(molybdenite)과 석영의 등전점(IEP)은 각각 pH 3 이하와 pH 2.7이었으며 안정화(분산)된 영역은 pH 5~10이었다. 순환수 현탁액의 경우, 잔류응집제의 의해 휘수연석의 제타전위는 pH 4 이상에서 -10 mV 이하로 감소하였다. pH 조절에 의한 부유선별 결과, 알칼리 영역에서 폴리머 사슬의 신장 및 확장, 칼슘 양이온($Ca^{2+}$)의 가교(ion bridge), 그리고 일부 무극성 폴리머/소수성 입자의 상호작용에 의한 응집 현상으로 부선효율이 급격히 저하되었다. 반면 약산성 영역(pH 5.5~6)은 수소이온에 의해 음이온성 폴리머가 중화되고 고분자 사슬의 기능이 약화됨에 따라 부선효율이 향상되었다. 조선부선 이후 정선부선의 최적조건인 pH 5.5, 포수제(kerosene) 20 g/t, 기포제(AF65) 50 g/t, 억제제($Na_2SiO_3$) 300 g/t, 정선횟수 2회에서 Mo 품위와 회수율이 각각 52.7%와 90.1%인 최종 정광을 얻어 광미여과액을 분쇄-조선-정선 공정에 지속적으로 재활용할 수 있는 기술을 개발하였다.

• 한국응용과학기술학회지
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• 제38권4호
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• pp.994-1002
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• 2021

양이온성 계면활성제(DTAB, TTAB 및 CTAB)에 의한 4-할로겐화 아닐린의 가용화상수(K_s)값을 UV-Vis법으로 측정하였다. 그 결과, 모든 아닐린 유도체에서 온도의 증가에 따라 K_s은 모두 감소하였으며, 할로겐 치환기의 반지름과 계면활성제의 소수기길이를 증가할수록 K_s값은 더욱 증가하였다. 이들 가용화상수 값을 이용하여 계산한 ΔG^o와 ΔH^o값은 측정한 범위 내에서 모두 음의 값을 그리고 ΔS^o값은 모두 양의 값을 나타내었다. 모든 아닐린 유도체에서 온도를 증가함에 따라 ΔG^o값은 감소하는 경향을 보였다. 그러나 온도의 증가에 따라 ΔH^o와 ΔS^o값은 모두 증가하는 경향을 보였다. 한편 할로겐치환기의 반지름을 증가할수록 이들 열역학 함수 값들은 대체적으로 감소하는 경향을 보였다. 그러나 계면활성제의 소수기길이를 증가하였을 때 이들 열역학 함수 값은 아닐린유도체의 종류에 따라 다르지만 대체적으로 증가하는 경향을 보였다. 이런 열역학 함수 값들의 변화로부터 4-할로겐화 아닐린과 미셀과의 상호작용의 종류와 세기를 그리고 이들이 미셀 내에서 가용화되는 위치를 추정할 수 있었다.

• Membrane and Water Treatment
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• 제10권3호
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• pp.207-212
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• 2019

Non-aqueous solvents (NASs) are generally known to be barely miscible, and reactive with polar compounds, such as water. However, water can interact with some NASs, which can be used as a new means for water recovery from saline water. This study explored the fate of water and salt in NAS, when saline water is mixed with NAS. Three amine solvents were selected as NAS. They had the same molecular formula, but were differentiated by their molecular structures, as follows: 1) NAS 'A' having the hydrophilic group ($NH_2$) at the end of the straight carbon chain, 2) NAS 'B' with symmetrical structure and having the hydrophilic group (NH) at the middle of the straight carbon chain, 3) NAS 'C' having the hydrophilic group ($NH_2$) at the end of the straight carbon chain but possessing a hydrophobic ethyl branch in the middle of the structure. In batch experiments, 0.5 M NaCl water was blended with NASs, and then water and salt content in the NAS were individually measured. Water absorption efficiencies by NAS 'B' and 'C' were 3.8 and 10.7%, respectively. However, salt rejection efficiency was 98.9% and 58.2%, respectively. NAS 'A' exhibited a higher water absorption efficiency of 35.6%, despite a worse salt rejection efficiency of 24.7%. Molecular dynamic (MD) simulation showed the different interactions of water and salts with each NAS. NAS 'A' formed lattice structured clusters, with the hydrophilic group located outside, and captured a large numbers of water molecules, together with salt ions, inside the cluster pockets. NAS 'B' formed a planar-shaped cluster, where only some water molecules, but no salt ions, migrated to the NAS cluster. NAS 'C', with an ethyl group branch, formed a cluster shaped similarly to that of 'B'; however, the boundary surface of the cluster looked higher than that of 'C', due to the branch structure in solvent. The MD simulation was helpful for understanding the experimental results for water absorption and salt rejection, by demonstrating the various interactions between water molecules and the salts, with the different NAS types.