• 대한수학회보
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• 제50권6호
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• pp.2013-2020
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• 2013

We study some properties of representable generalized local homology modules. By duality, we get some properties of good generalized local cohomology modules.

• 대한수학회보
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• 제40권2호
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• pp.281-288
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• 2003

We compute the mod p homology of the double loop space of 50(2n)/U(n) by the Serre spectral sequence of Hopf algebras. We also obtain the torsion information of the integral homology.

• 대한수학회논문집
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• 제11권3호
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• pp.585-593
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• 1996

We make the definition of hermitian K-theory for nonunital rings which makes as many senses as possible. We next show that the excision property in rational hermitian K-theory implies the nullity of rational $H B^-$-homology which is the antisymmetric part of Bar homology.

• 충청수학회지
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• 제36권4호
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• pp.223-229
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• 2023

We prove that a rational homology disk smoothing of the singularity W_p,q,r is ℚ-Gorenstein by using its sandwiched structure.

• 미생물학회지
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• 제26권3호
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• pp.155-161
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• 1988

Nucleotide sequence homology between bovine, simian, and porcine rotavirus was determined by the RNA:RNA hybridization technique. Single stranded RNA, prepared in vitro with EDTA activated endogeneous viral RNA polymerase, was hhbridized with tritium labeled bovine rotavirus genomic RNA. The heteroduplex RNA was treated with single stranded RNA specific ribonucleases and the RNase resistant hybrid RNA was precipitated, and collected by filtration on a filter paper. Seventy four percent RNA sequence homology between bovine and simian rotavirus and 8 percent RNA sequence homology between bovine and porcine rotavirus was confirmed by hybridization between tritium labeled single stranded RNA and viral genomic RNA.

• 미생물학회지
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• 제40권1호
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• pp.12-16
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• 2004

Acid proteinase는Aspergillus niger (acid pretense A)와 Cryphonectria parasitica (acid proteinase EapC)에서 분비하는 단백질로서 치즈를 제조할 때 이용하는 단백질이다. 본 연구에서는 Penicillium oxalicum HCLF-34로부터 acid proteinase의 부분유전자를 기존에 밝혀진 acid proteinase의 homology 정보로부터 degenerate primer를 제작하여 PCR방법을 이용하여 cloning하였다. Cloning된 유전자로부터 438 bp 염기서열을 분석하였으며, 이 염기서 열을 146개의 아미노산 정보로 변환하여 acid proteinase family와 homology를 비교한 결과 acid protease A와 71% 아미노산 서열의 homology를 나타내었고, EapC와 67%의 아미노산 서열 homology가 확인되었다.

• Journal of Life Science
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• 제9권2호
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• pp.9-14
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• 1999

Pseudomonas iodinum IFO 3558 adenosine deaminase(ADA) gene was cloned by the polymerase chain reaction and deduced the amino acid sequence of the enzyme. DNA sequence homology of Pseudomonas iodinum IFO 3558 ADA gene was compared to those of E. coli, human and mouse ADA genes. Unambiguous sequence from both strands of pM21 was obtained for the region believed to encode ADA. The sequence included a 804-nucleotide open reading frame, bounded on one end by sense primer and on the other end by two antisense primer. This open reading frame encodes a protein of 268 amino acids having a molecular weight of 29,448. The deduced amino acid sequence shows considerable similarity to those of E. coli, mouse and human ADA. Pseudomonas iodinum IFO 3558 nucleotide sequence shows 98.5% homology with that of the E. coli ADA sequence and 51.7% homology with that of the mouse ADA sequence and 52.5% homology with that of the human ADA sequence. The ADA protein sequence of Pseudomonas iodinum IFO 3558 shows 96.9% homology with that of the E. coli and 40.7% homology with that of the mouse and 41.8% homology with that of the human. The distance between two of the conserved elements, TVHAGE and SL(1)NTDDP has veen exactly conserved at 76 amino acids for all four ADAs. Two of the four conserved sequence elements shared among the four ADAs are also present in the yeast, rat, human (M), and Human(L) AMP deaminase. The SLSTDDP sequence differs only in the conservative substitution of a serine for an asparagine. A conserved cysteine with conserved spacing between these two regions is also found. Thus, sequence analysis of four ADAs and four AMP deaminases revealed the presence of a highly conserved sequence motif, SLN(S)TDDP, a conserved dipeptide, HA, and a conserved cysteine residue.

• 한국균학회지
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• 제28권1호
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• pp.22-25
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• 2000

Cosmid clone으로부터 mating activity를 가지는 pSC13의 양 말단은 1-71 $A{\alpha}3$ 교배유전자좌 Z3부위 2,430 bp와 Y3 region 8,160 bp 부근에서 homology를 지니는 것으로 나타나 교배활성에 필요한 모든 부위를 함유하는 것으로 사료되었다. 그리고 pSCE2는 1-71 $A{\alpha}3$의 Y region의 6,080 bp 부근에서 거의 완전한 homology를 가지는 것으로 보아 $A{\alpha}3$의 Y region을 함유하고 있음을 알 수 있으며, 또한 pSCE1도 MEP의 일부 sequence와도 거의 완전한 homology를 가지는 것으로 나타나 1-71 $A{\alpha}3$ 교배유전자좌와 모두 유사한 염기서열를 모두 지니면서 북미자생 치마버섯의 교배유전자좌의 염기배열이 남미자생의 것과 거의 유사한 분자적 구조를 지니고 있음을 나타내었다. 결정된 DNA sequence는 3265 bp로서 남미산 치마버섯 1-71 stain의 mating활성을 나타내는 $A{\alpha}3$ locus 염기서열중에 Z region과 거의 완전한 약 96%의 homology를 나타내었다. 또한 Polypeptide sequence비교에서도 약 82%의 높은 homology를 나타내었으며, 특히 transcription regulator로 알려진 homeodomain 및 acidic region에서는 각각 약 74%. 82%의 상당히 높은 비율의 homology를 지니고 있음이 확인되었다. 이러한 결과로 보아 남미와 북미의 대륙간에 자생하는 같은 allele type간에도 상당히 높은 비율의 교배유전자좌의 보존이 이루어지고 있음을 알 수 있다.

• 한국자기공명학회논문지
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• 제14권2호
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• pp.105-116
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• 2010

SH3YL1, a novel protein containing one Src homology 3 domain at the carboxyl terminus was first detected in mouse anagen skin cDNA. This protein had a significant homology with YHRO 16c/Ysc 84, the yeast Src homology 3 domain-containing protein. The sequence identity was remarkable at the carboxyl and amino-terminal Src homology 3 domain, suggesting that the novel protein is a mouse homolog of the yeast protein and thus was termed as SH3YL1. SH3YL1 is composed of two domains, a DUF500 at N-termini and a SH3 domain at C-termini. In our study we cloned the SH3 domain in bacterial expression system in Escherichia coli using pET32a vector with TEV protease cleavage site and purified as a monomer using affinity chromatography. The N-terminal poly-Histidine tag was cleaved with TEV protease and target protein was used for backbone studies. Our study showed that SH3 domain primarily consists of $\beta$-sheet which is in consistence with previous result performed on the truncated SH3 domain of SH3YL1.

• Journal of the Korean Society for Industrial and Applied Mathematics
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• 제25권4호
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• pp.296-311
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• 2021

Topological Data Analysis (TDA), a relatively new field of data analysis, has proved very useful in a variety of applications. The main persistence tool from TDA is persistent homology in which data structure is examined at many scales. Representations of persistent homology include persistence barcodes and persistence diagrams, both of which are not straightforward to reconcile with traditional machine learning algorithms as they are sets of intervals or multisets. The problem of faithfully representing barcodes and persistent diagrams has been pursued along two main avenues: kernel methods and vectorizations. One vectorization is the Betti sequence, or Betti curve, derived from the persistence barcode. While the Betti sequence has been used in classification problems in various applications, to our knowledge, the stability of the sequence has never before been discussed. In this paper we show that the Betti sequence is unstable under the 1-Wasserstein metric with regards to small perturbations in the barcode from which it is calculated. In addition, we propose a novel stabilized version of the Betti sequence based on the Gaussian smoothing seen in the Stable Persistence Bag of Words for persistent homology. We then introduce the normalized cumulative Betti sequence and provide numerical examples that support the main statement of the paper.