• Title/Summary/Keyword: High-throughput analysis

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Improving Transmission in Association with the Distance for Military Microwave Communications (군 MicroWave 통신 환경에서의 링크 거리를 고려한 전송 성능 향상 기법)

  • Youn, Jong Taek;Lim, Young Gap;Kim, Young Ho
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.39C no.11
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    • pp.1042-1049
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    • 2014
  • In Military MicroWave communication, the distance of link, availability, transmission capacity is the important point in order to design the circuit. Currently, operated by fixed modulation, in the future it will be evolved to the modulation techniques enabled to increase the transmission capacity. It would be hard to consistently guarantee the transmission quality of the high-availability because the occurrence probability of fading increase in terms of the link distance for the case of the long distance. In the case of the modulation techniques for the transmission of high-capacity, as the distance is long, a falling-off in the fade margin from the link budget analysis cause the decrease in the availability. It is difficult to provide QoS guaranteed connection. In this paper, we propose the performance improvement technique of transmission by the variable allocation of the bandwidth and the higher priority transmission technique using setting the ratio of the higher priority capacity in association with the distance of link. Also we suggest the alternative of the calculation for channel transmission capacity to design the circuit.

FPGA Implementation and Performance Analysis of High Speed Architecture for RC4 Stream Cipher Algorithm (RC4 스트림 암호 알고리즘을 위한 고속 연산 구조의 FPGA 구현 및 성능 분석)

  • 최병윤;이종형;조현숙
    • Journal of the Korea Institute of Information Security & Cryptology
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    • v.14 no.4
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    • pp.123-134
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    • 2004
  • In this paper a high speed architecture of the RC4 stream cipher is proposed and its FPGA implementation is presented. Compared to the conventional RC4 designs which have long initialization operation or use double or triple S-arrays to reduce latency delay due to S-array initialization phase, the proposed architecture for RC4 stream cipher eliminates the S-array initialization operation using 256-bit valid entry scheme and supports 40/128-bit key lengths with efficient modular arithmetic hardware. The proposed RC4 stream cipher is implemented using Xilinx XCV1000E-6H240C FPGA device. The designed RC4 stream cipher has about a throughput of 106 Mbits/sec at 40 MHz clock and thus can be applicable to WEP processor and RC4 key search processor.

Screening and functional validation of lipid metabolism-related lncRNA-46546 based on the transcriptome analysis of early embryonic muscle tissue in chicken

  • Ruonan, Chen;Kai, Liao;Herong, Liao;Li, Zhang;Haixuan, Zhao;Jie, Sun
    • Animal Bioscience
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    • v.36 no.2
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    • pp.175-190
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    • 2023
  • Objective: The study was conducted to screen differentially expressed long noncoding RNA (lncRNA) in chickens by high-throughput sequencing and explore its mechanism of action on intramuscular fat deposition. Methods: Herein, Rose crown and Cbb broiler chicken embryo breast and leg muscle lncRNA and mRNA expression profiles were constructed by RNA sequencing. A total of 96 and 42 differentially expressed lncRNAs were obtained in Rose crown vs Cobb broiler chicken breast and leg muscle, respectively. lncRNA-ENSGALT00000046546, with high interspecific variability and a potential regulatory role in lipid metabolism, and its predicted downstream target gene 1-acylglycerol-3-phosphate-O-acyltransferase 2 (AGPAT2), were selected for further study on the preadipocytes. Results: lncRNA-46546 overexpression in chicken preadipocyte 2 cells significantly increased (p<0.01) the expression levels of AGPAT2 and its downstream genes diacylglycerol acyltransferase 1 and diacylglycerol acyltransferase 2 and those of the fat metabolism-related genes peroxisome proliferator-activated receptor γ, CCAAT/enhancer binding protein α, fatty acid synthase, sterol regulatory element-binding transcription factor 1, and fatty acid binding protein 4. The lipid droplet concentration was higher in the overexpression group than in the control cells, and the triglyceride content in cells and medium was also significantly increased (p<0.01). Conclusion: This study preliminarily concludes that lncRNA-46546 may promote intramuscular fat deposition in chickens, laying a foundation for the study of lncRNAs in chicken early embryonic development and fat deposition.

A Virtual Grouping Scheme for Improving the Performance of IEEE 802.11 Distributed Coordination Function (IEEE 802.11 DCF의 성능 향상을 위한 가상 그룹 방법)

  • 김선명;조영종
    • Journal of the Institute of Electronics Engineers of Korea TC
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    • v.41 no.8
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    • pp.9-18
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    • 2004
  • The IEEE 802.11 Distributed Coordination Function(DCF) protocol provides a contention-based distribution channel access mechanism for stations to share the wireless medium. However, the performance of the DCF drops dramatically in terms of throughput, delay and delay jitter as the number of active stations becomes large. In this paper, we propose a simple and effective scheme, called DCF/VG(Distributed Coordination Function with Virtual Group), for improving the performance of the IEEE 802.11 DCF mechanism. In this scheme, each station independently decides the virtual group cycle using the information provided by the carrier sensing mechanism. The virtual group cycle consists of one or more virtual groups and a virtual group includes an idle period and a busy period. Each station operates in only one out of several virtual groups of the virtual group cycle and does not operate in the others. In other words, each station decreases its backoff counter and tries to transmit a packet only in its virtual group like the IEEE 802.11 DCF. Performance of the proposed scheme is investigated by numerical analysis and simulation. Numerical and simulation results show that the proposed scheme is very effective and has high throughput and low delay and jitter under a wide range of contention level.

Proteomic Characteristics of Calcium Enriched King Oyster Mushroom (Pleurotus eryngii) (칼슘함량이 강화된 새송이 버섯의 프로테옴 분석)

  • Bae, Hee-Sun;Kim, Dae-Hyun;Choi, Ung-Kyu
    • Korean Journal of Food Science and Technology
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    • v.43 no.1
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    • pp.12-16
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    • 2011
  • This study was conducted to identify the differences in proteomic characteristics between Ca-enriched king oyster mushrooms and general king oyster mushrooms. A combined high-throughput proteomic approach was employed to determine the expression profiles and identity of proteins using 2-dimensional gel electrophoresis and matrix-assisted laser desorption ionization time-of-flight (MALDI-TOF) mass spectrometry. The overall distribution patterns of the proteins were quite similar, but many of the protein spot intensities varied. A total of 10 proteins, representing a significant difference in the quantities of protein betweenthe two types of mushrooms, were successfully identified. Among these proteins, eight kinds were increased in the Ca-enriched king oyster mushrooms and two kinds were decreased. This study showed that proteomic analysis can help define specific changes in protein level and composition, which can occur in mushrooms where Ca content may or may not be enriched.

FDDI Throughput and Application Analysis of MAP Network Construction in Manufactruing Environment (제조 환경에서 MAP 네트워크 체제의 FDDI 효율과 적용 해석)

  • Kim, Jeong-Ho;Lee, Min-Nam;Lee, Sang-Beom
    • The Transactions of the Korea Information Processing Society
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    • v.2 no.1
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    • pp.95-105
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    • 1995
  • An appendix to the MAP 3.0 specification notes that there are primary advantages to use of fiber optics : noise immunity, ability to run in difficult electrical environments, safety and high data rates. All of these may be quite useful in various manufacturing environments. In this paper, we study on construction schmes for a fiber-based 802.4 MAP system including the use of both bus and star topologies. We suggest passive star network and FDDI network for manufacturing environment. And then, we propose the FDDI protocol including the use a dual ring topology running at 100 Mbps to physical and datalink layer of MAT specification and analysis it's protocol and topology for abilities in manufacturing environments, We evaluate about applications service, time-critical processing and topology of two models in manufacturing environment.

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Sharing based Admission Control Scheme for Service Differentiation in Optical Burst Switching Networks (광 버스트 스위칭 네트워크에서 서비스 차별화를 제공하는 공유 기반의 허락 제어 방식)

  • Paik, Junghoon
    • Journal of Broadcast Engineering
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    • v.20 no.5
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    • pp.748-755
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    • 2015
  • In this paper, sharing based admission control scheme is suggested for both service differentiation and improvement of wavelength utilization efficiency in burst switching networks. To provide service differentiation and high wavelength utilization efficiency, some of the wavelengths on a output link are shared with all classes and the others are used for the highest class exclusively. Markov based analysis is applied to the suggested scheme for the performance analysis and the numerical results are derived. The results are: The performance of lower traffic is more improved by the more number of shared wavelengths in case that the higher traffic or lower traffic is arrived equally or that the input rate of lower traffic is low. Another result is that the sharing effect of wavelengths is a little bit lowered when lower traffic passes the threshold.

Nonstandard Machine Learning Algorithms for Microarray Data Mining

  • Zhang, Byoung-Tak
    • Proceedings of the Korean Society for Bioinformatics Conference
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    • 2001.10a
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    • pp.165-196
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    • 2001
  • DNA chip 또는 microarray는 다수의 유전자 또는 유전자 조각을 (보통 수천내지 수만 개)칩상에 고정시켜 놓고 DNA hybridization 반응을 이용하여 유전자들의 발현 양상을 분석할 수 있는 기술이다. 이러한 high-throughput기술은 예전에는 생각하지 못했던 여러가지 분자생물학의 문제에 대한 해답을 제시해 줄 수 있을 뿐 만 아니라, 분자수준에서의 질병 진단, 신약 개발, 환경 오염 문제의 해결 등 그 응용 가능성이 무한하다. 이 기술의 실용적인 적용을 위해서는 DNA chip을 제작하기 위한 하드웨어/웻웨어 기술 외에도 이러한 데이터로부터 최대한 유용하고 새로운 지식을 창출하기 위한 bioinformatics 기술이 핵심이라고 할 수 있다. 유전자 발현 패턴을 데이터마이닝하는 문제는 크게 clustering, classification, dependency analysis로 구분할 수 있으며 이러한 기술은 통계학과인공지능 기계학습에 기반을 두고 있다. 주로 사용된 기법으로는 principal component analysis, hierarchical clustering, k-means, self-organizing maps, decision trees, multilayer perceptron neural networks, association rules 등이다. 본 세미나에서는 이러한 기본적인 기계학습 기술 외에 최근에 연구되고 있는 새로운 학습 기술로서 probabilistic graphical model (PGM)을 소개하고 이를 DNA chip 데이터 분석에 응용하는 연구를 살펴본다. PGM은 인공신경망, 그래프 이론, 확률 이론이 결합되어 형성된 기계학습 모델로서 인간 두뇌의 기억과 학습 기작에 기반을 두고 있으며 다른 기계학습 모델과의 큰 차이점 중의 하나는 generative model이라는 것이다. 즉 일단 모델이 만들어지면 이것으로부터 새로운 데이터를 생성할 수 있는 능력이 있어서, 만들어진 모델을 검증하고 이로부터 새로운 사실을 추론해 낼 수 있어 biological data mining 문제에서와 같이 새로운 지식을 발견하는 exploratory analysis에 적합하다. 또한probabilistic graphical model은 기존의 신경망 모델과는 달리 deterministic한의사결정이 아니라 확률에 기반한 soft inference를 하고 학습된 모델로부터 관련된 요인들간의 인과관계(causal relationship) 또는 상호의존관계(dependency)를 분석하기에 적합한 장점이 있다. 군체적인 PGM 모델의 예로서, Bayesian network, nonnegative matrix factorization (NMF), generative topographic mapping (GTM)의 구조와 학습 및 추론알고리즘을소개하고 이를 DNA칩 데이터 분석 평가 대회인 CAMDA-2000과 CAMDA-2001에서 사용된cancer diagnosis 문제와 gene-drug dependency analysis 문제에 적용한 결과를 살펴본다.

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Proteome analysis of roots of sorghum under copper stress

  • Roy, Swapan Kumar;Cho, Seong-Woo;Kwon, Soo Jeong;Kamal, Abu Hena Mostafa;Lee, Dong-Gi;Sarker, Kabita;Lee, Moon-Soon;Xin, Zhanguo;Woo, Sun-Hee
    • Proceedings of the Korean Society of Crop Science Conference
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    • 2017.06a
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    • pp.130-130
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    • 2017
  • Sorghum bicolor is considered as copper-tolerant species. The present study was conducted to understand the copper tolerance mechanism in Sorghum seedling roots. Morphological and effects of Cu on other interacting ions were observed prominently in the roots when the plants were subjected to different concentrations (0, 50, and $100{\mu}M$) of $CuSO_4$. However, the morphological characteristics were reduced by Cu stress, and the most significant growth inhibition was observed in plants treated with the highest concentration of $Cu^{2+}$ ions ($100{\mu}M$). In the proteome analysis, high-throughput two-dimensional polyacrylamide gel electrophoresis coupled with MALDI-TOF-TOF mass spectrometry was performed to explore the molecular responses of Cu-induced sorghum seedling roots. In two-dimensional silver-stained gels, a total of 422 differentially expressed proteins (${\geq}1.5-fold$) were identified using Progenesis SameSpot software. A total of 21 protein spots (${\geq}1.5-fold$) from Cu-induced sorghum roots were analyzed by mass spectrometry. Of the 21 differentially expressed protein spots from Cu-induced sorghum roots, a total of 10 proteins were up-regulated, and 11 proteins were down-regulated. The abundance of the most identified protein species from the roots that function in stress response and metabolism was significantly enhanced, while protein species involved in transcription and regulation were severely reduced. The results obtained from the present study may provide insights into the tolerance mechanism of seedling roots in Sorghum.

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Comparative proteome analysis of diploid and tetraploid root in Platycodon grandiflorum

  • Kwon, Soo Jeong;Roy, Swapan Kumar;Yoo, Jang-Hawan;Cho, Seong-Woo;Kim, Hag Hyun;Boo, Hee Ock;Woo, Sun-Hee
    • Proceedings of the Korean Society of Crop Science Conference
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    • 2017.06a
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    • pp.123-123
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    • 2017
  • In spite of the potential medicinal significance and a wide range of pharmacologic properties of Platycodon grandiflorum, the molecular mechanism of its roots is still unknown. The present study was conducted to profile proteins from 3, 4 and 5 months aged diploid and tetraploid roots of Platycodon grandiflorum using high throughput proteome approach. Two-dimensional gels stained with CBB, a total of 68 differential expressed proteins were identified from the diploid root out of 767 protein spots using image analysis by Progenesis SameSpot software. Out of total differential expressed spots, 29 differential expressed protein spots (${\geq}2-fold$) were analyzed using LTQ-FTICR MS whereas a total of 24 protein spots were up-regulated and 5 protein spots were down-regulated. On the contrary, in the case of tetraploid root, a total of 86 differential expressed proteins were identified from tetraploid root out of 1033 protein spots of which a total of 39 differential expressed protein spots (${\geq}2-fold$) were analyzed using LTQ-FTICR MS whereas a total of 21 protein spots were up-regulated and a total of 18 protein spots were down-regulated. It was revealed that the identified proteins from the explants were mainly associated with the nucleotide binding, oxidoreductase activity, transferase activity. Taken together, the identified proteins may be helpful to identify key candidate proteins for genetic improvement of plants.

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