• 한국미생물·생명공학회지
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• 제49권3호
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• pp.384-390
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• 2021

A Gram-negative, aerobic, motile by gliding, and rod-shaped marine bacterium, designated CE67^T was isolated from the marine sponge Callyspongia elegans on Biyang-do in Jeju Island. The CE67^T strain grew optimally at 25℃, pH 7.5, and in the presence of 2-3% (w/v) NaCl. Phylogenetic analysis based on 16S rRNA gene sequence showed that strain CE67^T was related to the genus Aureivirga and had the highest 16S rRNA gene sequence similarity to the Aureivirga marina VIII.04^T type strain (96.3%). The primary fatty acids (>10%) of strain CE67^T were iso-C_15:0 (35.3%) and iso-C_17:0 3OH (21.8%). The polar lipid profile of strain CE67^T contained phosphatidylethanolamine, unidentified aminolipids, and unidentified lipids. The predominant menaquinone was MK-6. The DNA G+C content was 29.1 mol%. Based on the polyphasic taxonomic analysis, strain CE67^T was determined to be a representative novel species of the genus Aureivirga for which we propose the name Aureivirga callyspongiae sp. nov., whose strain type is CE67^T (=KCTC 42847^T=JCM 34566^T).

• 미생물학회지
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• 제31권3호
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• pp.179-183
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• 1993

A restricted facultatively methanol-oxidizing bacterium, Methylovorus sp. strain SS1, was isolate dfrom soil samples from Kuala Lumpur, Malaysia, through methanol-enrichment culture technique. The isolate was nonmotile Gram-negative rod and did not have complex internal membrane system. The colonies were small, pale-yellow, and raised convex with entire margin. The cell did not produce any spores and capsular materials. The cell was obligately aerobic and exhibited catalase, but no oxidase, activity. Plasmid, carotenoid pigment, and poly-.betha.-hydroxybutyric acid were not found. The guanine plus cytosine content of the DNA was 55%. The isolate was found to grow only on methanol methylamine, or glucose. Growth factors were not required. Cells growing on methanol was found to produce extracellular polysaccharides containing glucose, lactose, and fructose. Growth was optimal (t$_{d}$= 1.7) with 0.5%(v/v) methanol at 40.deg.C and pH 6.5. No Growth was observed at over 60.deg.C. Cell-free extracts of the methanol grown cells exhibited the phenazine methosulfate-linked methanol dehydrogenase activity Methanol was found to be assimilate dthrough the ribulose monophosphate pathway.y.

• 한국동물위생학회지
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• 제46권1호
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• pp.81-85
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• 2023

This case report is about hemolymph nodes found in a dairy cow whose function is still not fully elucidated. A 4-month Holstein cow presented severe respiratory symptoms and hematochezia for a while with respiratory acidosis and metabolic alkalosis. Coccidiosis was diagnosed and treated immediately, but the cow died from respiratory acidosis and metabolic alkalosis. At necropsy, no abnormal appearance in thoracic and peritoneal organs was observed, but hemolymph nodes were observed being multifocally stuck on omasum serosa and the subcutaneous fascia of abdominal region, and the larger dark red lymph nodes were found along the omasum great curvature. Microscopically, lymphoid depletion and lymphadenitis in the lymph nodes were examined to point systemic infection, and in the hemolymph node, multifocally demarcated pale lesions with macrophage infiltration and fibrin deposition nearby subcapsular sinus. In subcapsular sinus of the hemolymph node, rod to linear gram-negative bacteria were found. Through this study, we might conclude that the hemolymph node is involved in pathogen phagocytosis.

• Journal of Microbiology and Biotechnology
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• 제34권8호
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• pp.1636-1641
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• 2024

A Gram-stain-positive, aerobic, white-coloured, rod-shaped bacteria, designated as a strain dW9^T, was isolated from soil. Strain dW9^T was catalase-positive and oxidase-negative. Strain dW9^T grew at temperature of 20-37℃ and at pH of 5.0-7.0. Phylogenetic and 16S rRNA gene analysis indicated that strain dW9^T belonged to the genus Paenibacillus with its closest relative being Paenibacillus filicis S4^T (97.4% sequence similarity). The genome size of dW9^T was 7,787,916 bp with DNA G+C G+C content of 51.3%. The digital DNA-DNA hybridization (dDDH) and average nucleotide identity (ANI) values of dW9^T with its closest relatives were found to be <22.0% and <74.0%, respectively. The only respiratory quinone was MK-7, and the major fatty acids were antiso-C_15:0 and iso-C_16:0. Overall, the comprehensive taxonomic analysis revealed that strain dW9^T met all the fundamental criteria to be classified as a novel species within the genus Paenibacillus. Accordingly, we propose the name Paenibacillus gyeongsangnamensis sp. nov., with the type strain dW9^T (=KCTC 43431^T =NBRC 116022^T).

• Journal of Microbiology and Biotechnology
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• 제34권9호
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• pp.1819-1825
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• 2024

An aerobic, Gram-stain-negative, catalase-positive, rod-shaped, and motile bacteria, designated as a strain WR6^T was isolated from soil in Republic of Korea. Strain WR6^T grew at temperatures of 10-37℃, at pH of 5.0-9.0, and at NaCl concentrations of 0-3.0% (w/v). Phylogenetic and 16S rRNA gene nucleotide sequence analysis confirmed that strain WR6^T affiliated to the genus Mesorhizobium, with the nearest relative being Mesorhizobium waimense ICMP 19557^T (98.5%). The genome of strain WR6^T was 5,035,462 bp with DNA G+C content of 62.6%. In strain WR6^T, Q-10 was sole ubiquinone; summed feature 8 (C_18:1ω7c and/or C_18:1ω6c) and C_19:0 cyclo ω8c were predominant fatty acids; and diphosphatidylglycerol, phosphatidylglycerol, phosphatidylmethylethanolamine, phosphatidylcholine, and phosphatidylethanolamine were major polar lipids. Based on these polyphasic taxonomic data, strain WR6^T represents a novel species in the genus Mesorhizobium. Accordingly, we propose the name Mesorhizobium koreense sp. nov., with the type strain WR6^T (=KCTC 92695^T =NBRC 116021^T).

• 한국수산과학회지
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• 제8권2호
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• pp.107-117
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• 1975

Alaska pollack caught in the Northern Pacific Ocean and frozen aboard vessel are skipped to the plant and processed into frozen fillets. In the present paper quality changes during thwaing, refreezing and storage at $-20^{\circ}C$ are discussed. Natural, running-water, vacuum and steam thawing were employed as thawing methods. And contact plate, air blast, immersion in dry ice-alcohol solution freezing and storage at $-5^{\circ}C$ were applied to refreeze the thawed fillets. As quality factors content of drip released, salt-extractable protein, VBN, DNA in the drip and pH were determined. In addition, bacteriological tests were also carried out along with the whole process. In thawing of round material, the vacuum thawing was more effective than any other method, resulting in drip, salt-extractable protein $(N\%)$, VBN and DNA as $4.4\%,\;1.82\%,\;16.21mg\%$ and $13.70\;{\mu}g/ml$, respectively. Storage at $-5^{\circ}C$ as refreezing method yielded lower in drip and DNA content but similar to or slightly higher in both salt-extractable protein and VBN, which might postulate that the quality of the frozen fillet depends not largely on the secondary freezing but on the conditions of thawing and primary freezing. It seemed that most of the bacterial flora in thawed fillet came from skin and viscera of fish, worker's hands, utensils and other processing facilities, since sanitary indicative bacteria were not detected in the frozen flesh of round Alaska pollack. Bacterial quality of fillet varied with thawing methods, vacuum thawing appeared more sanitative compared with other methods as natural, running-water, and steam thawing. Bacterial colonies isolated from the thawed fillet were composed of $73.8\%$ Gram negative rod shape, $4.9\%$ Gram positive rod shape, $18.0\%$ cocci, and $3.3\%$ yeast. Decreasing rate of coliform group of the fillet during the storage at $-20^{\circ}C$ for 30 days was more than $70\%$ and that of plate count was less than of coliform group.

• KSBB Journal
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• 제32권2호
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• pp.124-132
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• 2017

A methane-oxidizing bacterium was isolated from rice paddy field soil around Jeollanam-do province, Korea, and characterized. The isolate was gram-negative, orange pigmented and short rod ($1.1-1.2{\times}1.6-1.9{\mu}m$). It was catalase and urease-negative but oxidase-positive. The strain utilized methane and methanol as sole carbon and energy sources. It had an ability to grow with an optimum pH 7.0 and an optimum growth temperature $30^{\circ}C$. The strain was resistant to antibiotic polymyxin B but sensitive to streptomycin, kanamycin, ampicillin, chloramphenicol and rifampicin. The isolate required copper for their growth with concentration range of $2-25{\mu}M$, with an optimum of $10{\mu}M$. Under optimal culture condition, specific cell growth rate and generation time were found to be $0.046hr^{-1}$ and 15.13 hr, respectively. Phylogenetic analysis based on 16S rDNA sequences indicated that the strain formed a tight phylogenetic lineage with Methylomonas koyamae with a value of 99.4% gene sequence homology. So, we named the isolate as Methylomonas sp. SM4. 8.6 mM methanol was accumulated in the reaction mixture containing 70 mM sodium formate and 40 mM $MgCl_2$ (MDH inhibitor) under atmosphere of methane:air (40:60) mixture for 24 hr at $30^{\circ}C$.

• Journal of Microbiology and Biotechnology
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• 제16권10호
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• pp.1537-1543
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• 2006

A bacterial strain named HY-3 that produces a highly active extracellular protease was isolated from the digestive tract of a spider, Nephila clavata. The bacterium was a Gram-negative, oxidase-negative, catalase-positive, nonhalophilic, nitrate-reducing, facultative anaerobe. Transmission and scanning electron microscopies demonstrated that the isolate was non-spare-forming, straight, rod-shaped, and motile by peritrichous flagella. The G+C content of the DNA was 57.0 mol%. The isoprenoid quinone type was ubiquinone with 8 isoprene units (Q-8). The morphological and biochemical characteristics including the predominant fatty acid and phospholipids profiles placed the isolate HY-3 in the family Enterobacteriaceae. Further biochemical characterization and phylogenetic studies including determination of an almost complete 16S ribosomal DNA sequence suggested that the bacterium was closely related to the genus Serratia. DNA-DNA hybridization analysis revealed that this extracellular protease-producing strain belongs to Serratia proteamaculans, which is also known far its association with insects.

• 한국식품과학회지
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• 제33권5호
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• pp.574-581
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• 2001

감식초로부터 초산 생성능이 우수한 Acetobacter sp. S-1, S-2 및 S-3를 분리 동정하고 그 미생물학적 특성과 내산성을 평가하였다. 분리 균들은 모두 Gram 음성의 단간균으로 포자를 형성하지 않았고 운동성이 있었으며, catalase, methyl red, oxidation fermentation, Voges-Proskaues 및 nitrate reduction 시험에서 양성반응을 나타내었고 hydrogen sulfide와 ONPG 시험에서는 음성반응을 나타내었다. 분리균들은 Carr 배지내에서 표준 균주인 Acetobacter aceti, Acetobacter liquefaciens, Acetobacter diazotrophicus와 큰 차이 없이 정상적인 생육곡선을 나타내었으며, 산 생성의 경향도 비슷하였다. 배양최적온도는 $30^{\circ}C$이었으며 최적 초기에탄올 농도는 6%이었다. 분리된 Acetobacter sp. 균주들은 4% 이상의 초산 농도에서 그 생육과 산 생성이 억제되었다. 초산의 농도가 증가할수록 Acetobacter sp. 세포내의 $Mg^{++}$누출량이 증가하여 6% 초산농도에서는 거의 대부분의 $Mg^{++}$이 누출되었다. 분리균들의 glycolysis 능력은 알칼리에서보다 산성 쪽에서 더 안정적이었으며 최적 pH는 $6.0{\sim}7.0$이었다. Acetobacter sp. S-1과 S-3의 $H^+-ATPase$의 최적 pH는 $5.5{\sim}7.5$이었고 Acetobacter sp. S-2는 pH $6.0{\sim}7.5$이었다.

• 한국응용과학기술학회지
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• 제39권5호
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• pp.605-613
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• 2022

Flavobacterium 속(genus)은 Bacteriodetes 문(phylum), Flavobacteriaceae 과(family)의 대표속(type genus)으로서, 이 속의 세균들은 황색 색소를 함유하는 그람 음성 간균이다. 이 속 세균들은 자연계의 다양한 환경에서 분리되고 있다. 황색색소를 함유하는 그람음성 간균이 경남 창원시 소재 창원대학교 교내의 연못에서 분리되었고, 이 세균은 균주 B1으로 명명되었다. 균주 B1을 생리학적, 생화학적 및 계통분석학적으로 분석한 결과, Flavobacterium 속에 속하는 것으로 결론지어졌다. 이 세균의 16S rRNA 유전자 염기서열을 BLAST로 분석해 본 결과, 다른 어떠한 세균과도 16S rRNA 유전자 염기서열의 상동성이 99.0%를 넘지 않았다. 균주 B1의 주된 지방산은 iso-C_15:0(19.6%), summed feature 3(C_16:1 ω7c and/or C_16:1 ω6c, 16.1%), iso-CC_17:0 3OH(10.2%), iso-C_15:0 3OH(8.4%) 및 iso-C_15:1 G(6.6%)인 것으로 밝혀졌는데, 이는 다른 Flavobacterium 종들의 지방산 함량과 확연한 차이가 있는 것을 알 수 있었다. 이 세균의 16S rDNA 염기서열은 genbank에 accession number OP060681로 등록되었다.