Browse > Article
http://dx.doi.org/10.12925/jkocs.2022.39.5.605

Taxonomic characteristics of novel Flavobacteriumsp. B1 from a freshwater pond  

Bae, Young-Min (Department of Life Science and Public Health, Changwon University)
Publication Information
Journal of the Korean Applied Science and Technology / v.39, no.5, 2022 , pp. 605-613 More about this Journal
Abstract
The genus Flavobacterium, type genus of the family Flavobacteriaceae and a member of the phylum Bacteriodetes includes gram-negative and yellow-pigmented rods. Those bacteria have been isolated from various environments of the earth. A yellow-pigmented, gram-negative rod was isolated from a pond in the campus of the Changwon University, Changwon, Kyeongnam and designated as strain B1. Strain B1 was further analyzed physiologically, biochemically and phylogenetically, and concluded to be a member of genus Flavobacterium. BLAST search of the 16S rRNA gene sequence of strain B1 shows homology no higher than 99.0% with those sequences of other bacteria. The major fatty acids of strain B1 are iso-C15:0 (19.6%), summed feature 3(C16:1 ω7c and/or C16:1 ω6c, 16.1%), iso-C17:0 3OH(10.2%), iso-C15:0 3OH(8.4%) and iso-C15:1 G(6.6%) showing significant differences in fatty acid compositions between strain B1 and the other known Flavobacterium species. DNA sequence of 16S rRNA gene of strain B1 was deposited in genbank under accession number OP060681.
Keywords
bacteria; Flavobacterium; 16S rRNA gene; BLAST; phylogenetic analysis;
Citations & Related Records
Times Cited By KSCI : 1  (Citation Analysis)
연도 인용수 순위
1 S. Sheu, Y. Guo, W. Chen, "Flavobacteriumamnicola sp. nov., Isolated from a Sub-tropical Stream", Int J Syst Evol Microbiol, Vol.69, pp. 2283-2291, (2019).   DOI
2 D. Jung, Y. Kim, J. Bang, S. Kim, "Flavobacterium hydrocarbonoxydans sp. nov., Isolated from Polluted Soil", Int J Syst Evol Microbiol, Vol.71, doi:10.1099/ijsem.0.005053, (2021).   DOI
3 E. Jung, S. Choi, S. Lee, J. Song, H. Lee, E. Kim, P. Lee, K. Choi, J. Kim, S. Lee, "Flavobacterium dauae sp. nov., Isolated from Rhizosphere Soil of a Tomato Plant", Int J Syst Evol Microbiol, Vol.71, doi:10.1099/ijsem.0.005033, (2021).   DOI
4 C. Good, J. Davidson, G. D. Wiens, T. J. Welch, S. Summerfelt, "Flavobacterium branchiophilum and F. succinicans Associated with Bacterial Gill Disease in Rainbow Trout Oncorhynchus mykiss (Walbaum) in Water Recirculation Aquaculture Systems", J Fish Dis, Vol.38, pp. 409-413, (2015).   DOI
5 K. Sundell, L. Landor, P. Nicolas, J. Jorgensen, D. Castillo, M. Middelboe, I. Dalsgaard, V. L. Donati, L. Madsen, T. Wiklund, "Phenotypic and Genetic Predictors of Pathogenicity and Virulence in Flavobacterium psychrophilum", Front Microbiol, Vol.10, pp. 1711, (2019).   DOI
6 W. G. Weisburg, S. M. Barns, D. A. Pelletier, D. J. Lane, "16S Ribosomal DNA Amplification for Phylogenetic Study", J Bacteriol, Vol.173, pp. 697-703, (1991).   DOI
7 H. Choi, S. Park, M. Heo, "Flavobacteriumjocheonensis sp. nov., Isolated from Marine Green Alga Ulva pertusa" J Microbio. Biotechnol, Vol.29, pp. 1266-1272, (2019).   DOI
8 Y. Joung, H. Jang, J. Song, J. Cho, "Flavobacterium aquariorum sp. nov., Isolated from Freshwater of the North Han River", J Microbiol, Vol.57, pp. 343-349, (2019).   DOI
9 D. K. Chaudhary, D. Kim, D. Kim, J. Kim, "Flavobacterium petrolei sp. nov., a Novel Psychrophilic, Diesel-degrading Bacterium Isolated from Oil-contaminated Arctic Soil", Sci Rep, Vol.9, pp. 4134, (2019).   DOI
10 J. E. Clarridge III, "Impact of 16S rRNA Gene Sequence Analysis for Identification of Bacteria on Clinical Microbiology and Infectious Diseases", Clin Microbiol Rev, Vol.17, pp. 840-862, (2004).   DOI
11 S. C. Debnath, A. M. A. Miyah, C. Chen, H. Sheng, X. Xu, Y. Wu, D. Zheng, J. Xu, Y. Di, P. Wang, L. Shen, "Flavobacterium zhairuonensis sp. nov., a Gliding Bacterium Isolated from Marine Sediment of the East China Sea", J Microbiol, Vol.57, pp. 1065-1072, (2019).   DOI
12 G. Li, Y. Jiang, Y. Li, X. Chen, K. Zhang, R. Shen, L. Han, X. Huang, C. Jiang, "Flavobacterium macacae sp. nov., Isolated from Macaca mulatta Faeces", Int J Syst Evol Microbiol, Vol.70, pp. 51-57, (2020).   DOI
13 J. P. Evenhuis, B. R. LaFrentz, "Virulence of Flavobacterium columnare Genomovars in Rainbow Trout Oncorhynchus mykiss", Dis Aquat Organ, Vol.120, pp. 217-224, (2016).   DOI
14 M. Johnson, I. Zaretskaya, Y. Raytselis, Y. Merezhuk, S. McGinnis, T. L. Madden, "NCBI BLAST: a Better Web Interface", Nucleic Acids Res, Vol.36, pp. W5-9, (2008).   DOI
15 K. Tamura, G. Stecher, D. Peterson, A. Filipski, S. Kumar, "MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0", Mol Biol Evol, Vol.30, pp. 2725-2729, (2013).   DOI
16 S. Kralova, H. Busse, M. Bezdicek, M. Sandoval-Powers, M. Nykrynova, E. Stankova, D. Krsek, I. Sedlacek, "Flavobacterium flabelliforme sp. nov. and Flavobacterium geliluteum sp. nov., Two Multidrug-resistant Psychrotrophic Species Isolated from Antarctica", Front Microbiol, Vol.12, pp. 729977, (2021).   DOI
17 M. Drancourt, C. Bollet, A. Carlioz, R. Martelin, J. P. Gayral, D. Raoult, "16S Ribosomal DNA Sequence Analysis of a Large Collection of Environmental and Clinical Unidentifiable Bacterial Isolates", J Clin Microbiol, Vol.38, pp. 3623-3630, (2000).   DOI
18 J. M. Janda, S. L. Abbott, "16S rRNA Gene Sequencing for Bacterial Identification in the Diagnostic Laboratory: Pluses, Perils, and Pitfalls", J Clin Microbiol, Vol.45, pp. 2761-2764, (2007).   DOI