• Journal of Microbiology and Biotechnology
• /
• 제13권6호
• /
• pp.881-891
• /
• 2003

Paenibacillus polymyxa is a plant growth-promoting rhizobacterium (PGPR) which can be used for biological control of plant diseases. Several bacterial strains were isolated from rotten roots of Korean ginseng (Panax ginseng C. A. Meyer) that were in storage. These strains were identified as P. polymyxa, based on a RAPD analysis using a P. polymyxa-specific primer, cultural and physiological characteristics, an analysis utilizing the Biolog system, gas chromatography of fatty acid methyl esters (GC-FAME), and the 16S rDNA sequence analysis. These strains were found to cause the rot in stored ginseng roots. Twenty-six P. polymyxa strains, including twenty GBR strains, were phylogenetically classified into two groups according to the ERIC and BOX-PCR analyses and 16S rDNA sequencing, and the resulting groupings systematized to the degrees of virulence of each strain in causing root rot. In particular, highly virulent GBR strains clustered together, and this group may be considered as subspecies or biovar. The virulence of the strains seemed to be related to their starch hydrolysis enzyme activity, but not their cellulase or hemicellulase activity, since strains with reduced or no starch-hydrolytic activity showed little or no virulence. Artificial inoculation of the highly virulent strain GBR-1 onto the root surfaces of Korean ginseng resulted in small brown lesions which were sunken and confined to the outer portion of the root. Ginseng root discs inoculated in vitro or two-year-old roots grown in soil drenched with the inoculum developed significant rot only when the inoculum density was $10^{6}-10^{7}$ or more colony-forming units (CFU) per ml. These results suggest that P. polymyxa might induce ginseng root rot if their population levels are high. Based on these results, it is recommended that the concentration of P. polymyxa should be monitored, when it is used as a biocontrol agent of ginseng, especially in the treatment of stored roots.

• 한국응용곤충학회지
• /
• 제22권3호
• /
• pp.181-185
• /
• 1983

강원도 철원군 동송읍 일대의 인삼근부병을 조사한 결과 감자썩이선충(Ditylenchus destructor)을 분리 동정하였으며 이 선충이 인삼근부병의 한 원인임이 확인되었다. 이지역 인삼재식지 조사면적의 약 $36\%$인 $28,050m^2$가 이 선충으로 인하여 피해를 입었다. 이 선충에 걸린 인삼은 주로 주근(Tap root)의 피층이 갈변하고 Sponge 화되며 피층내부에 Cork 조직이 발달하여 부리가 잘부러진다. 이런 뿌리는 표피가 잘 벗겨지고 심한경우에는 뿌리에 내공이 생기거나 뿌리전체가 썩어 없어지며 줄기와 잎은 급격히 푸른채로 시들어 죽는다. 잎이시드는 병징이 있는 포장에서는 감자썩이선충이 $8.5\~222$마리/30g 이었고 병징이 나타나지 않은 포장에서는 $0\~7.0$ 마리였다.

• 식물병연구
• /
• 제11권1호
• /
• pp.48-55
• /
• 2005

Cylindrocarpon destructans는 인삼 및 수목에 뿌리썩음병을 일으키는 토양 전염병 식물병원균이다. 신속 정확한 검출 가능성을 알아보기 위하여 종 특이적인 primer와 nested PCR 기법을 활용하여 인삼 유묘로부터 뿌리썩음 병균 C. destructans로 2차 PCR증폭을 실시한 결과 병원성이 확인된 C.destructans에서만 400bp의 종특이적 증폭산물을 얻을 수 있었다. 종 특이성 primer 와 nested PCR 기법을 이용한 인삼뿌리썩음병균 DNA에 대한 반응 민감도는 최저 약 1fg으로 나타나 단 몇 개의 포자만 존재해도 검출이 가능하였다. 또한, nested PCR 기법은 실제 이병토양에 심었을 경우에도 C.destructans 에 감염된 인삼 유묘로부터만 정확하게 병원균을 검출해 내었다. 종특이적 primer 와 nested PCR 기법을 이용한 본 연구 결과는 실제 재배농가에서 인삼 경작시 뿌리썩음병 진단에 매우 유용하게 활용될 수 있을 것으로 판단된다.

• Mycobiology
• /
• 제38권1호
• /
• pp.33-38
• /
• 2010

We have successfully applied the nested PCR to detect Cylindrocarpon destructans, a major pathogen causing root rot disease from ginseng seedlings in our former study. The PCR assay, in this study, was used to detect the pathogen from soils. The nested PCR using internal transcribed spacer (ITS) 1, 4 primer set and Dest 1, 4 primer set maintained the specificity in soils containing various microorganisms. For a soil DNA extraction method targeting chlamydospores, when several cell wall disrupting methods were tested, the combination of lyophilization and grinding with glass beads, which broke almost all the chlamydospores, was the strongest. The DNA extraction method which was completed based on the above was simple and time-saving because of exclusion of unnecessary stages, and efficient to apply in soils. As three ginseng fields whose histories were known were analyzed, the PCR assay resulted as our expectation derived from the field information. The direct PCR method will be utilized as a reliable and rapid tool for detecting and monitoring C. destructans in ginseng fields.

• 한국식물병리학회지
• /
• 제13권1호
• /
• pp.46-56
• /
• 1997

Based on the principal component analysis (PCA) of Richards' parameter estimates, ginseng field soils were grouped as the principal component 1 (PC1) and the principal component 2 (PC2). The microflora and physico-chemical characteristics of each soil group were compared to elucidate soil environmental factors affecting the disease development of root rot of ginseng seedling. Among 3 soil groups by PC1, there were differences in the populations of total fungi (TF) and Cylindrocarpon plus Fusarium (C+F), and the population ratio of Cylindrocarpon plus Fusarium to total fungi or total bacteria (C+F/TF, C+F/TB) in rhizoplane of ginseng seedlings, the population of total actinomycetes (TA) and the population ratio of total Fusarium to total actinomycetes (Fus/TA) in soil, and soil chemical properties (EC, NO3-N, K, Mn, ect.). Among 4 soil groups by PC2, there were differences in TF, C+F, TB, C+F/TF and C+F/TB in the rhizoplane, Trichoderma plus Gliocladium (T+G) in soil, and P2O5 content in soil. Especially, EC, NO3-N, K, K/Mg and Mn were positively correlated to PC1, and TA was negatively to PC1; however, TF, C+F, TB, C+F/TF and C+F/TB in the rhizoplane were significantly correlated to PC2 positively. On the other hand, microbes in the rhizoplane were not significantly correlated to the stand-missing rate (SMR), although TA and Fe/Mn were negatively correlated, and pH and Ca were positively correlated to SMR.

• Mycobiology
• /
• 제45권4호
• /
• pp.370-378
• /
• 2017

Cylindrocarpon destructans is an ascomycete soil-borne pathogen that causes ginseng root rot. To identify effective biocontrol agents, we isolated several bacteria from ginseng cultivation soil and evaluated their antifungal activity. Among the isolated bacteria, one isolate (named JH7) was selected for its high antibiotic activity and was further examined for antagonism against fungal pathogens. Strain JH7 was identified as a Chromobacterium sp. using phylogenetic analysis based on 16S rRNA gene sequences. This strain was shown to produce antimicrobial molecules, including chitinases and proteases, but not cellulases. Additionally, the ability of JH7 to produce siderophore and solubilize insoluble phosphate supports its antagonistic and beneficial traits for plant growth. The JH7 strain suppressed the conidiation, conidial germination, and chlamydospore formation of C. destructans. Furthermore, the JH7 strain inhibited other plant pathogenic fungi. Thus, it provides a basis for developing a biocontrol agent for ginseng cultivation.

• 한국약용작물학회:학술대회논문집
• /
• 한국약용작물학회 2007년도 추계학술발표회
• /
• pp.321.2-321.2
• /
• 2007

• 식물병연구
• /
• 제7권1호
• /
• pp.20-24
• /
• 2001

생물검정에 의한 유묘 이병율의 직접 조사치, 또는 근면 및 토양요인에 의한 이병율의 추정치를 이용하여 포장내에서의 년생별 지상부 결주율을 추정함으로써 토양에서의 인삼 뿌리썩음병 발병을 예측할 수 있는 시험 모형을 개발하였다. 그리고 발병예측 모형의 용인별 결주율 추정치와 포장에서 결주율 조사치간의 적합성을 통계분석을 통해 조사한 결과, 유묘 이병율에 의한 결주율 추정치는 근권요인(토양 이화학성 및미생물상 밀도)에 의한 추정치에 비해 결주율 조사치에 대한 적합성이 더 높았다. 조사 포장수를 확대하여 유묘이병율에 의한 발병예측 모형식의 적합성을 재확인한 결과, 저년생 인삼의 결주율 추정치는 3년생 포장, 그리고 고년생 인삼의 결주율 추정치는 5년생 포장에서의 실제 결주율 조사치와 1% 통계적 유의수준에서 일치하였다. 유묘 이병율에 의한 발병예측 모형식은 인삼 뿌리썩음병에 대한 토양 검정 차원에서 적용할 경우 재배예정지의 적지 여부를 판정할 수 있고, 인삼 생육기간 중에 적용할 경우 고년생 포장에서의 병진전을 예측할 수 있어 조기수확 여부를 판정할 수 있을 것으로 사료된다.

• Mycobiology
• /
• 제44권1호
• /
• pp.63-65
• /
• 2016

Cylindrocarpon destructans causes root rot disease in ginseng and can survive for a long time, producing chlamydospores. We optimized conditions to induce chlamydospore production from the conidia of C. destructans, isolated from Korean ginseng. This will provide the basis for testing the efficacy of control agents targeting these chlamydospores.

• Journal of Ginseng Research
• /
• 제44권1호
• /
• pp.161-167
• /
• 2020

Background: The ascomycete fungi Cylindrocarpon destructans (Cd) and Fusarium solani (Fs) cause ginseng root rot and significantly reduce the quality and yield of ginseng. Cd produces the secondary metabolite radicicol, which targets the molecular chaperone Hsp90. Fs is resistant to radicicol, whereas other fungal genera associated with ginseng disease are sensitive to it. Radicicol resistance mechanisms have not yet been elucidated. Methods: Transcriptome analyses of Fs and Cd mycelia treated with or without radicicol were conducted using RNA-seq. All of the differentially expressed genes (DEGs) were functionally annotated using the Fusarium graminearum transcript database. In addition, deletions of two transporter genes identified by RNA-seq were created to confirm their contributions to radicicol resistance. Results: Treatment with radicicol resulted in upregulation of chitin synthase and cell wall integrity genes in Fs and upregulation of nicotinamide adenine dinucleotide dehydrogenase and sugar transporter genes in Cd. Genes encoding an ATP-binding cassette transporter, an aflatoxin efflux pump, ammonium permease 1 (mep1), and nitrilase were differentially expressed in both Fs and Cd. Among these four genes, only the ABC transporter was upregulated in both Fs and Cd. The aflatoxin efflux pump and mep1 were upregulated in Cd, but downregulated in Fs, whereas nitrilase was downregulated in both Fs and Cd. Conclusion: The transcriptome analyses suggested radicicol resistance pathways, and deletions of the transporter genes indicated that they contribute to radicicol resistance.