• Title/Summary/Keyword: Genotypes

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Responses of Soybean Genotypes to Different Levels of Irrigation

  • Rabbani, M.F.;Ashrafuzzaman, M.;Hoque, A.M.;Karim, M.Abdul
    • 한국작물학회지
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    • 제49권2호
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    • pp.131-135
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    • 2004
  • To find out the responses of soybean genotypes in terms of different levels of irrigation with the aim of evaluating the growth, yield, and its optimum levels of irrigation, an experiment was conducted at the Field of Crop Botany Department, Bangladesh Agricultural University, Mymensingh during the period from November 2000 to February 2001. Five levels of irrigation viz. $\textrm{I}_0$: no irrigation, $\textrm{I}_1$: one time irrigation at 20 days after sowing (DAS), $\textrm{I}_2$:two times irrigation at 20 and 40 DAS, $\textrm{I}_3$: three times irrigation at 20, 40, and 60 DAS, and $\textrm{I}_4$: four times irrigation at 20, 40, 60, and 80 DAS and three genotypes of soybean viz. BS-3, BS-16, and BS-60 were used in this experiment. The crop was grown in a split plot design having three replications. The plant height, leaf area index, crop growth rate, shoot dry weight, branches $\textrm{plantI}_{-1}$, filled pods $\textrm{plantI}_{-1}$, seeds $\textrm{plantI}_{-1}$, seed yield, and harvest index were influenced significantly by irrigation and these were found to be highest at three times irrigation except branches $\textrm{plantI}_{-1}$. The chlorophyll content increased but empty pods $\textrm{plantI}_{-1}$ decreased with increase in irrigation levels. Genotypes of soybean varied significantly in terms of growth attributes at various growth stages except shoot dry weight at 90 DAS. The genotype BS-3 performed better compared to other genotypes and gave maximum seed yield.

Response of Barley Genotypes to Fusarium Head Blight under Natural Infection and Artificial Inoculation Conditions

  • Khanal, Raja;Choo, Thin Meiw;Xue, Allen G.;Vigier, Bernard;Savard, Marc E.;Blackwell, Barbara;Wang, Junmei;Yang, Jianming;Martin, Richard A.
    • The Plant Pathology Journal
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    • 제37권5호
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    • pp.455-464
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    • 2021
  • Forty-eight spring barley genotypes were evaluated for deoxynivalenol (DON) concentration under natural infection across 5 years at Harrington, Prince Edward Island. These genotypes were also evaluated for Fusarium head blight (FHB) severity and DON concentration under field nurseries with artificial inoculation of Fusarium graminearum by the grain spawn method across 2 years at Ottawa, Ontario, and one year at Hangzhou, China. Additionally, these genotypes were also evaluated for FHB severity under greenhouse conditions with artificial inoculation of F. graminearum by conidial suspension spray method across 3 years at Ottawa, Ontario. The objective of the study was to investigate if reactions of barley genotypes to artificial FHB inoculation correlate with reactions to natural FHB infection. DON concentration under natural infection was positively correlated with DON concentration (r = 0.47, P < 0.01) and FHB incidence (r = 0.56, P < 0.01) in the artificially inoculated nursery with grain spawn method. Therefore, the grain spawn method can be used to effectively screen for low DON. FHB severity, generated from greenhouse spray, however, was not correlated with DON concentration (r = 0.12, P > 0.05) under natural infection and it was not correlated with DON concentration (r = -0.23, P > 0.05) and FHB incidence (r = 0.19, P > 0.05) in the artificially inoculated nursery with grain spawn method. FHB severity, DON concentration, and yield were affected by year, genotype, and the genotype × year interaction. The effectiveness of greenhouse spray inoculation for indirect selection for low DON concentration requires further studies. Nine of the 48 genotypes were found to contain low DON under natural infection. Island barley had low DON and also had high yield.

The whole wheat effect and refined with E-selectin polymorphism on breast cancer

  • Zakariya, Bilal Fadil;Almohaidi, Asmaa M. Salih;Simsek, Secil Akilli;Kamal, Areege Mustafa;Al-Dabbagh, Wijdan H.;Al-Waysi, Safaa A.
    • 분석과학
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    • 제35권4호
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    • pp.161-168
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    • 2022
  • Wheat is rich in sources of fiber, oligosaccharides, and resistant starch, simple carbohydrates which may have a protective role against carcinoma. Additionally, Whole wheat/bran as well includes contains phytochemicals such as flavonoids, lignans, folate, phytosterols, phenolic acids, and tocols. The above phytochemicals suitable forms antioxidant and cholesterol-reducing activities. Phytoestrogens are regarded as especially essential in the preventative measures of hormonally dependent malignancies such as breast cancer (BC). In this study lowered BC risk has been associated with whole grain/bran consumption with an odds ratio (OR=0.24 and 95 %CI=0.10-0.56). Wheat/bran appears to have a reliable protective impact against BC. While intake of white bread has been associated with a high risk of BC (OR=2.63 and CI 95 %=1.07-6.48). Also, the E-Selectin (SELE) Single nucleotide polymorphisms (SNPs) rs5353 A/G and rs932307 C/T were investigated using the sanger sequences approach. There was a positive association between genotypes (rs5353 GG+AG) and (rs932307 TT+CT) with rate consumption of wheat-white/bread and these genotypes were more frequent in patients had BC in comparison with a significant difference (P=0.03) (P=0.01), respectively. The genotypes (GG+AG) frequency of the rs5353 polymorphism and (TT+CT) genotypes of the rs932307 polymorphism in the present study had a high risk of cancer with (OR=3.05), (OR=4.17) respectively. While these genotypes showed no significant association with the rate of whole grain consumption in patients and control. Therefore, the type of wheat may associate with increased incidence of disease-related with type of Polymorphism because some present genotypes of SNPs showed high (OR) which may refer to their positive associated with disease, the white wheat consumption may active the risky association between SNPs and BC.

Association analysis of polymorphisms in six keratin genes with wool traits in sheep

  • Sulayman, Ablat;Tursun, Mahira;Sulaiman, Yiming;Huang, Xixia;Tian, Kechuan;Tian, Yuezhen;Xu, Xinming;Fu, Xuefeng;Mamat, Amat;Tulafu, Hanikezi
    • Asian-Australasian Journal of Animal Sciences
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    • 제31권6호
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    • pp.775-783
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    • 2018
  • Objective: The purpose of this study was to investigate the genetic effects of six keratin (KRT) genes on the wool traits of 418 Chinese Merino (Xinjiang type) (CMXT) individuals. Methods: To explore the effects and association of six KRT genes on sheep wool traits, The polymerase chain reaction-based single-strand conformation polymorphism (PCR-SSCP), DNA sequencing, and the gene pyramiding effect methods were used. Results: We report 20 mutation sites (single-nucleotide polymorphisms) within the six KRT genes, in which twelve induced silent mutations; five induced missense mutations and resulted in $Ile{\rightarrow}Thr$, $Glu{\rightarrow}Asp$, $Gly{\rightarrow}Ala$, $Ala{\rightarrow}Ser$, $Se{\rightarrow}His$; two were nonsense mutations and one was a same-sense mutation. Association analysis showed that two genotypes of the KRT31 gene were significantly associated with fiber diameter (p<0.05); three genotypes of the KRT36 gene were significantly associated with wool fineness score and fiber diameter (p<0.05), three genotypes of the KRT38 gene were significantly associated with the number of crimps (p<0.05); and three genotypes of the KRT85 gene were significantly associated with wool crimps score, body size, and fiber diameter (p<0.05). Analysis of the gene pyramiding effect between the different genotypes of the gene loci KRT36, KRT38, and KRT85, each genotype in a gene locus was combined with all the genotypes of another two gene loci and formed the different three loci combinations, indicated a total of 26 types of possible combined genotypes in the analyzed population. Compared with the other combined genotypes, the combinations CC-GG-II, CC-HH-IJ, CC-HH-JJ, DD-HH-JJ, CC-GH-IJ, and CC-GH-JJ at gene loci KRT36, KRT38, and KRT85, respectively, had a greater effect on wool traits (p<0.05). Conclusion: Our results indicate that the mutation loci of KRT31, KRT36, KRT38, and KRT85 genes, as well as the combinations at gene loci KRT36, KRT38, and KRT85 in CMXT have significant effects on wool traits, suggesting that these genes are important candidate genes for wool traits, which will contribute to sheep breeding and provide a molecular basis for improved wool quality in sheep.

한발저항성 정도가 다른 보리 품종들의 한발처리에 따른 생리적 특성변화 (Changes in Physiological Characteristics of Barley Genotypes under Drought Stress)

  • 이변우;부금동;백남천;김정곤
    • 한국작물학회지
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    • 제48권6호
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    • pp.506-515
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    • 2003
  • 이 논문은 한발저항성이 다른 6개 보리 품종의 한발에 따른 생장, 잎의 수분포텐셜(leaf water potential, LWP), 상대함수량(leaf relative water content, RWC), 삼투압(leaf osmotic potential, OP), 삼투조정(osmotic adjustment, OA), 팽압(leaf turgor pressure, LTP), 순광합섬, 기공전도도, 엽육전도도, 엽록소형광 등의 변화를 조사하여 비교한 결과를 요약하면 다음과 같다. 1 한발 처리시 토양수분포텐셜은 -0.05㎫이었고. 종료시에는 -0.29㎫로 저하하였다. Dicktoo-S 동보리 1호, Dicktoo-L, Dicktoo-T, 수원쌀보리 365호, 탑골보리 품종의 한발처리구 건물중은 각각 대조구(처리기간종 -0.05㎫ 유지)에 비하여 68%, 69%, 70%, 86%, 55%, 37%를 나타내어 Dicktoo 계통과 동보리1호의 한발저항성이 강하였고, 수원쌀보리 365호와 탑골보리는 한발저항성이 약하였다. 2. 한발저항성이 강한 품종은 삼투조정능력이 커서 한발처리에 따른 RWC와 LWP의 저하가 작았고 팽압유지능력이 컸다. 3. 한발처리에 따라 순광합성이 저하하였고 그 저하정도는 한발저항성이 큰 품종이 작았는데, 이는 한발저항성이 큰 품종이 기공전도도, 엽육전도도 및 PSII 최대양자수율(Fv/Fm)의 저하가 적었기 때문이었다. 4. 결론적으로 저항성이 큰 품종은 삼투조정에 의한 수분유지능력이 크고 이에 따라 광합성저하가 적어 상대적으로 생장의 감소가 적은 것으로 판단되었다.

박과와 가지과 유전자원 종자의 항산화력 및 바이오 활성 화합물 함량 변이 (Variation of Antioxidant Activity and Bioactive Compounds Content in Cucurbitaceas and Solanaceae Seeds)

  • 김성겸;이상규;이희주;최장선;김진선;김수;이우문
    • 농업생명과학연구
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    • 제51권2호
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    • pp.47-59
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    • 2017
  • 본 연구의 목적은 박과와 가지과 채소 종자들의 항산화력과 총 페놀 및 플라보노이드들의 함량 변이를 조사하여 고 함유 바이오 활성 화합물 채소 유전자원들을 선발하고, 이를 활용한 고부가가치기능성 상품 개발을 위한 과학적 기초 자료를 제공하는데 있다. 박과(수박, 호박, 여주와 수세미) 및 가지과(매운 고추, 단고추와 가지) 총 408 유전자원들에 대하여 항산화력과 총 페놀 및 플라보노이드들의 함량을 조사하였다. 수박과 호박 종자의 총 페놀 함량은 각각 19.9-343.8 및 $6.1-81.2mg{\cdot}100g^{-1}\;DW$이며, 수박 유전자형의 총 페놀 함량이 $160mg{\cdot}100g^{-1}\;DW$이상인 유전자원은 12%이었다. 수박과 호박 종자의 플라보노이드 함량의 각각 80 및 $41.3mg{\cdot}100g^{-1}\;DW$이었다. 매운 고추 종자의 플라보노이드 함량은 $64.4-472.5mg{\cdot}100g^{-1}\;DW$였고, 평균은 $165.0mg{\cdot}100g^{-1}\;DW$이었다. 23개의 매운 고추 계통이 90% 항산화력이 있는 것으로 분류되었다. 단고추 종자의 항산화력은 35.9-90.3%이며, 항산화력이 82%이상인 유전자원은 23%였다. 가지의 총 페놀과 플라보노이드 함량은 각각 $38.1-642.0mg{\cdot}100g^{-1}\;DW$$14.2-1217.0mg{\cdot}100g^{-1}\;DW$이며, 항산화력, 총 페놀 및 플라보노이드 함량이 함께 우수한 8개의 가지 유전자원을 선발하였다. 박과와 가지과 유전자원들의 종자에서 항산화력 및 생리 활성 화합물 함량의 변이가 높았다. 그리고 생리 활성 화합물 함량 및 항산화력이 우수하여 선발된 유전자원들의 종자를 활용하여 기능성 부가가치 상품들을 개발하는데 더 효율적으로 활용될 것으로 기대된다.

칡소 씨수소의 MC1R 유전자형과 자손의 모색 발현 (Sires' MC1R Genotypes and Coat Color of the Offspring of the Chikso (Korean Brindle Cattle))

  • 박재희;이창우;이해이;최재원;최연호;권아남;지연희;김종국
    • 한국수정란이식학회지
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    • 제29권1호
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    • pp.21-27
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    • 2014
  • The objective of this study was to determine the effect of the MC1R genotypes of the Chikso (Korean brindle cattle) sires on the coat colors of their offspring. In this study, 15 Chikso sires with known MC1R genotypes were used for breeding in the Gangwon Province Livestock Research Center, the Chungbuk Institute of Livestock and Veterinary Research, and the Livestock Experiment Station, Jeonbuk Institute of Livestock and Veterinary Research from either 2011 or 2012 to 2013. There were 6 sires with $E^+E^+$ genotypes and 9 sires with $E^+e$ genotypes, and their coat colors were all whole brindle (more than 50 of the body). Among the 90 calves produced in 2011~2013 or 2012~2013 from the 15 sires, 50 (55.6%) of them were females and 40 (44.4%) of them were males. Coat colors of the offspring were determined when they reached over 6 months of age. Calves with whole brindle, part brindle, brown and black coat colors were 42 (48.3%), 11 (12.6%), 18 (20.7%) and 16 (18.4%), respectively. Ratio of calves with whole brindle coat color was higher than any other coat colors. Among the offspring with whole brindle color, 20 (41.7%) calves were female and 22 (51.3%) calves were male. By determining the MC1R genotypes of the dams and calves in this study along the family lines, and investigating other genes that may be involved in the coat colors of the Chikso, better breeding system may be established to increase the brindle coat color appearance in the future.

Study on the Relationship between Polymorphisms in Glutathione S-transferase and Ischemic Cerebrovascular Disease

  • Han Sang-Hyuk;Park Sae-Wook;Shin Yong-Il;Cho Kwang-Ho;Moon Byung-Soon
    • 대한한의학회지
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    • 제25권4호
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    • pp.36-42
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    • 2004
  • Objective : Glutathione S-transferase polymorphism (GST) were examined in 120 cases with ischemic cerebrovascular disease (ICVD) to test the hyperthesis that GST polymorphisms confer a risk to an individual to develop ICVD. Tobacco smoking is a major cause of both cancer and vascular disease. Methods : therefore We were stratified the subjects with ICVD for smoking status, and then examined whether polymorphisms in this detoxification enzyme gene, GST, influence risk of ICVD Results : Neither GSTM1 nor GSTT1 genotypes in the ICVD group was significantly different from the control group (n=207), even in smokers. We attempted the combined analyses for GSTM1 and GSTT1 genotypes in ICVD for smoking status. No significant association observed between the combined genotypes and ICVD Conclusion : Our observation do not confirm the effect of the GSTM1 and GSTT1 genotypes as a risk factor for ICVD, even in smokers.

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Genetic Deletions of GSTM1 and GSTT1 in Head and Neck Cancer: Review of the Literature from 2000 to 2012

  • Masood, Nosheen;Yasmin, Azra;Kayani, Mahmood A.
    • Asian Pacific Journal of Cancer Prevention
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    • 제14권6호
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    • pp.3535-3539
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    • 2013
  • Head and neck cancer is one of the leading causes of deaths worldwide. Two genes GSTM1 and GSTT1 involved in phase II of carcinogen detoxification have been frequently studied in the literature. Their null genotypes are thought to be associated with increased head and neck cancer risk. However, the published reviews are not up to date and many important papers have been skipped. The current literature review was restricted to the null genotypes of the GSTM1 and GSTT1 genes with special emphasis on the genotypic status. We found that the size of study sample varied greatly and the oral cavity cancer was more influenced by GSTM1 and GSTT1 gene deletions. With respect to ethnicity Asians are more prone to head and neck cancers with these null genotypes as compared to Europeans and Americans. The current review showed significant associations (OR=9.0, 95%CI; 1.4-9.5; OR=3.7, 95%CI; 1.4-9.5) of GSTM1 and GSTT1 null genotypes with head and neck cancers. Review confirms the data of previous reviews that GSTM1 and GSTT1 gene polymorphisms may be risk factors for cancer initiation.