• 제목/요약/키워드: GENETIC RELATIONSHIP

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Lack of Any Relationship Between Circulating Autoantibodies and Interleukin-6 Levels in Egyptian Patients Infected with the Hepatitis C Virus

  • Nasr, Mohamed Y;Deeb, Ammar S Ali;Badra, Gamal;Sayed, Ibrahim H El
    • Asian Pacific Journal of Cancer Prevention
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    • 제17권11호
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    • pp.4977-4982
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    • 2016
  • Introduction: Elevated serum interleukin (IL) 6 has been reported in patients infected with the hepatitis C virus (HCV), but it remains debatable whether this influences the production of autoantibodies and the biochemical profile of HCV disease. Therefore, this current study was conducted to evaluate the relationship between IL-6 and circulating autoantibody levels in HCV positive patients. Methods: Levels of IL-6 in serum samples from 102 patients with HCV and 103 normal controls were determined by enzyme linked immunosorbent assay (ELISA). Autoantibodies were detected by immunofluorescence. Results: Levels of IL-6 were significantly higher (p=0.028) in patients infected with (HCV) compared with normal group. Autoantibodies were noted in in 43.1% of the patients; of these, 23.5% featured anti-nuclear antibodies (ANA+), 16.7% anti-smooth muscle antibodies (ASMA+), 7.8% anti-mitochondrial antibodies (AMA+), 17.6% anti-parietal cell antibodies (APCA+), 7.8% anti canalicular antibodies, and 2.9% anti reticulin antibodies (ARA+). No patients were found to be positive for anti-brush border antibodies (ABBA) or anti-ribosomal antibodies. (ARiA). No links with IL-6 levels were apparent. Conclusions: IL-6 levels are increased in patients infected with HCV disease and could influence the production of autoantibodies. However, this study did not provide evidence of a specific relationship between IL6 and circulating autoantibodies in such cases.

Empirical relationship between band gap and synthesis parameters of chemical vapor deposition-synthesized multiwalled carbon nanotubes

  • Obasogie, Oyema E.;Abdulkareem, Ambali S.;Mohammed, Is'haq A.;Bankole, Mercy T.;Tijani, Jimoh. O.;Abubakre, Oladiran K.
    • Carbon letters
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    • 제28권
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    • pp.72-80
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    • 2018
  • In this study, an empirical relationship between the energy band gap of multi-walled carbon nanotubes (MWCNTs) and synthesis parameters in a chemical vapor deposition (CVD) reactor using factorial design of experiment was established. A bimetallic (Fe-Ni) catalyst supported on $CaCO_3$ was synthesized via wet impregnation technique and used for MWCNT growth. The effects of synthesis parameters such as temperature, time, acetylene flow rate, and argon carrier gas flow rate on the MWCNTs energy gap, yield, and aspect ratio were investigated. The as-prepared supported bimetallic catalyst and the MWCNTs were characterized for their morphologies, microstructures, elemental composition, thermal profiles and surface areas by high-resolution scanning electron microscope, high resolution transmission electron microscope, energy dispersive X-ray spectroscopy, thermal gravimetry analysis and Brunauer-Emmett-Teller. A regression model was developed to establish the relationship between band gap energy, MWCNTs yield and aspect ratio. The results revealed that the optimum conditions to obtain high yield and quality MWCNTs of 159.9% were: temperature ($700^{\circ}C$), time (55 min), argon flow rate ($230.37mL\;min^{-1}$) and acetylene flow rate ($150mL\;min^{-1}$) respectively. The developed regression models demonstrated that the estimated values for the three response variables; energy gap, yield and aspect ratio, were 0.246 eV, 557.64 and 0.82. The regression models showed that the energy band gap, yield, and aspect ratio of the MWCNTs were largely influenced by the synthesis parameters and can be controlled in a CVD reactor.

cpDNA와 ITS 염기변이에 근거한 신품종 생장알로에 유전적 상관관계 (Genetic relationship of Aloe vera 'Saengjang', a new forma, based on cpDNA and ITS sequence variation)

  • 크리쉬나모르씨;장선일;황성수
    • 식물분류학회지
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    • 제44권4호
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    • pp.250-256
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    • 2014
  • 본 연구는 3개의 색소체 matK, trnL-F, rbcL DNA 염기서열과 1개의 핵 ITS DNA 염기서열을 근거로 한국산 Aloe 3종 A. arborescens, A. vera 그리고 A. saponaria 등과 하나의 변이종 알로에의 유전적 상관관계를 알고자 수행되었다. 전체 2,420 bp 서열이 증폭되었다. 두 개의 삽인-결실(indel)이 trnL 지역에서 확인되었고, 또한 여러 개의 종 특이적인 염기자위가 전체 29개의 최소변이 정보지역(parsimonious informative site)에서 확인되었다. 조사된 한국산 4 종간에는 148 염기변이 지역이 있었으며, 세계산 Aloe 종들을 포함한 비교해서는 170개의 변이지역 중 75개의 최소변이 지역이 확인되었다. UPGMA를 이용한 phenogram에서 새로운 변이종 알로에는 A. vera와 가장 가깝게 유집되었다. 변이종 알로에는 아직까지 보고된 어떤 종류의 Aloe속내 종과 형태적 및 유전적으로 일치하지 않았다. 조사된 알로에 종들의 유집분석 결과는 기존의 연구결과와 일치하였다.

현삼속 식물의 종판별을 위한 Mitochondrial DNA의 염기서열 및 PCR-RFLP 분석 (Molecular Authentication of Scrophularia herbs by PCR-RFLP Based on rpl-5 Region of Mitochondrial DNA)

  • 이정훈;조익현;이제완;박춘근;방경환;김홍식;박충범
    • 한국약용작물학회지
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    • 제18권3호
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    • pp.173-179
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    • 2010
  • This study describes an efficient approach to the development of DNA markers for use in distinguishing the Scrophularia species that have been used as useful medicinal crops. In order to distinguish Scrophularia species, DNA sequences of rpl-5 region in mitochondrial DNA of Scrophularia species were analysed for detecting sequence variations, and the PCR-RFLP method was applied for developing practicable DNA marker patterns. Several DNA variations were detected by the sequence comparison of rpl-5 region among Scrophularia species. Genetic relationship analysis of Scrophularia species was carried out based on these DNA variations. DNA variations of rpl-5 region were revealed that it was significantly efficient in genetic relationship analysis of Scrophularia species. In addition, Scrophularia species tested in this study were completely discriminated by four polymorphic genotypes by PCR-RFLP combined with Tsp509 I (^AATT) restriction enzyme. Our results suggested that DNA sequence variations of rpl-5 region were sufficiently useful for genetic relationship analysis of Scrophularia species. Polymorphic genotypes by PCR-RFLP using the Tsp509 I enzyme will be useful for discrimination of Scrophularia species as a practicable DNA markers.

Genetic Studies and Development of Prediction Equations in Jersey${\times}$Sahiwal and Holstein-Friesian${\times}$Sahiwal Half Breds

  • Singh, P.K.;Kumar, Dhirendra;Varma, S.K.
    • Asian-Australasian Journal of Animal Sciences
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    • 제18권2호
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    • pp.179-184
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    • 2005
  • First lactation records (174) of Jersey${\times}$Sahiwal and Holstein Friesian${\times}$Sahiwal half breds under 9 sires maintained at Chandra Shekher Azad University of Agriculture and Technology, Kanpur, Uttar Pradesh, India from 1975-1983, were used to estimate the genetic parameters and to predict herd life milk yield and average milk yield per day of herd life from first lactation traits. The traits included were: age at first calving, first service period, first lactation period, first calving interval, first lactation milk yield, milk yield per day of first calving interval, herd life milk yield, herd life and average milk yield per day of herd life. Most of the production and reproduction traits were found to have positive and significant correlations between them on genetic as well as phenotypic scales. Total twelve regression equations were fitted. The prediction equation of herd life milk yield in both the genetic groups showed linear relationship with AFC, FSP, FLP, FLMY and MY/DCI and was apparent and significant. Similarly, polynomials for milk yield per day of herd life for J${\times}$S and HF${\times}$S half breds also showed linear trend, which was found highly significant. The highest and lowest $R^2$ values were found for FCI and AFC, respectively.

Analysis of Genetic Variability Using RAPD Markers in Paeonia spp. Grown in Korea

  • Lim, Mi Young;Jana, Sonali;Sivanesan, Iyyakkannu;Park, Hyun Rho;Hwang, Ji Hyun;Park, Young Hoon;Jeong, Byoung Ryong
    • 원예과학기술지
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    • 제31권3호
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    • pp.322-327
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    • 2013
  • The genetic diversity and phylogenetic relationships of eleven herbaceous peonies grown in Korea were analyzed by random amplified polymorphic DNA (RAPD). Twenty-four decamer RAPD primers were used in a comparative analysis of these Korean peony species. Of the 142 total RAPD fragments amplified, 124 (87.3%) were found to be polymorphic. The remaining 18 fragments were found to be monomorphic (12.7%) shared by individuals of all 11 peony species. Cluster analysis based on the presence or absence of bands was performed by Jaccard's similarity coefficient, based on Unweighted Pair Group Method with Arithmetic Averages. Genetic similarity range was 0.39 to 0.90 with a mean of 0.64. This study offered a rapid and reliable method for the estimation of variability among different peony species which could be utilized by the breeders for further improvement of the local peony species. Also, the results propose that the RAPD marker technique is a useful tool for evaluation of genetic diversity and relationship amongst different peony species.

Use of Cattle Microsatellite Markers to Assess Genetic Diversity of Thai Swamp Buffalo (Bubalus bubalis)

  • Sraphet, Supajit;Moolmuang, Benchamart;Na-Chiangmai, Ancharlie;Panyim, Sakol;Smith, Duncan R.;Triwitayakorn, Kanokporn
    • Asian-Australasian Journal of Animal Sciences
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    • 제21권2호
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    • pp.177-180
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    • 2008
  • In this study, cattle microsatellite markers recommended for diversity studies of cattle by the EU AIRE 2066 Concerted Action Group were used to study the genetic diversity of 105 Thai swamp buffalo which were randomly selected from eight different research stations of the Department of Livestock Development, Thailand. Of 34 primer pairs, 16 were successfully amplified while the rest showed non-specific amplification. The lowest number of alleles was two while the highest was nine, with an average of 4.7 alleles per locus. The average unbiased heterozygosity for all eight populations was 0.5233, with a low of 0.4772 (Samui) and a high of 0.5616 (Burirum). The genetic distance ranged from 0.0574 to 0.2575. Populations from Lopburi and Burirum showed the closest relationship, whereas Srisagat and Samui were the most divergent. The results generated with the primers recommended by the EU AIRE 2066 Concerted Action Group are at a slight variance from our previous study, possibly as a result of the number of specific amplification products obtained, suggesting that cattle markers may not be optimal for studies of the genetic diversity of the Thai swamp buffalo.

인공 지진파 작성을 위한 유전자 알고리즘의 적용 (Incorporating Genetic Algorithms into the Generation of Artificial Accelerations)

  • 박형기;정헌교
    • 한국지진공학회논문집
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    • 제11권2호
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    • pp.1-9
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    • 2007
  • 유전자 알고리즘을 이용하여 구조물의 지진응답해석에 사용할 인공 가속도시간이력을 작성하는 방법을 제시한다. 유전자 알고리즘을 적용하기 위해서 유전원질에 해당되는 결정변수로서 응답스펙트럼 값을 계산할 진동수를 결정하고, 산술평균 교차연산자와 산술비 돌연변이연산자를 제안한다. 이들 연산자와 전형적인 단순 교차연산자를 사용하여 설계응답스펙트럼에 부합하는 인공 지진파 작성에 사용한다. 또한 작성된 인공 가속도시간이력은 실제 계측되는 지진파의 몇 가지의 외형적 특성을 가져야 하므로 이를 고려한 인공 가속도시간이력이 작성되도록 한다. 이 외형적 특성으로는 가속도시간이력의 포락형태, 지진파의 2수평성분간의 상관관계, 지반의 최대가속도 - 최대속도 - 최대변위 관계 등이다.

Molecular Structure of PCR Cloned PHA Synthase Genes of Pseudomonas putida KT2440 and Its Utilization for Medium-Chain Length Polyhydroxyalkanoate Production

  • Kim, Tae-Kwon;Shin, Hyun-Dong;Seo, Min-Cheol;Lee, Jin-Nam;Lee, Yong-Hyun
    • Journal of Microbiology and Biotechnology
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    • 제13권2호
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    • pp.182-190
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    • 2003
  • A new phaC gene cluster encoding polyhydroxyalkanoate (PHA) synthase I PHA depolymerase, and PHA synthase II was cloned using the touchdown PCR method, from medium-chain length (mcl-) PHA-producing strain Pseudomonas putida KT2440. The molecular structure of the cloned phaCl gene was analyzed, and the phylogenic relationship was compared with other phaCl genes cloned from Pseudomonas species. The cloned phaCl gene was expressed in a recombinant E. coli to the similar level of PHA synthase in the parent strain P. putida KT2440, but no significant amount of mcl-PHA was accumulated. The isolated phaCl gene was re-introduced into the parent strain P. putida KT2440 to amplify the PHA synthase I activity, and the recombinant P. purida accumulated mcl-PHA more effectively, increasing from 26.6 to $43.5\%$. The monomer compositions of 3-hydroxylalkanoates in mcl-PHA were also modified significantly in the recombinant P. putida enforcing the cloned phaCl gene.

Genetic Diversity of 14 Indigenous Grey Goose Breeds in China Based on Microsatellite Markers

  • Tu, Yunjie;Chen, K.W.;Zhang, S.J.;Tang, Q.P.;Gao, Y.S.;Yang, N.
    • Asian-Australasian Journal of Animal Sciences
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    • 제19권1호
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    • pp.1-6
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    • 2006
  • This experiment first cloned some microsatellite sequences for goose species by magnetic beads enriched method and studied the genetic structure research of 14 indigenous grey goose breeds using 19 developed and 12 searched microsatellite markers with middle polymorphism. According to the allele frequencies of 31 microsatellite sites, mean heterozygosity (H), polymorphism information content (PIC) and $D_A$ genetic distances were calculated for 31-microsatellite sites. The results showed that 25 of 31microsatellite sites were middle polymorphic, so the 25 microsatellite markers were effective markers for analysis of genetic relationship among goose breeds. The mean heterozygosity was between 0.4985 and 0.6916. The highest was in the Xupu (0.6916), and in the Yan was the lowest (0.4985) which was consistent with that of PIC. The phylogenetic tree was completed through analysis of UPGMA. Fencheng Grey, Shoutou, Yangjiang and Magang were grouped firstly, then Xongguo Grey, Wugang Tong, Changle and Youjiang were the second group; Gang, Yan Xupu and Yili were the third group; Yongkang Grey and Wuzeng were the fourth group. The results could provide basic molecular data for the research on the characteristics of local breeds in the eastern China, and a scientific basis for the conservation and utilization of those breeds.