• Title/Summary/Keyword: G+C rich

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Flooding Stress-Induced Glycine-Rich RNA-Binding Protein from Nicotiana tabacum

  • Lee, Mi-Ok;Kim, Keun Pill;Kim, Byung-gee;Hahn, Ji-Sook;Hong, Choo Bong
    • Molecules and Cells
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    • v.27 no.1
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    • pp.47-54
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    • 2009
  • A cDNA clone for a transcript preferentially expressed during an early phase of flooding was isolated from Nicotiana tabacum. Nucleotide sequencing of the cDNA clone identified an open reading frame that has high homology to the previously reported glycine-rich RNA-binding proteins. The open reading frame consists of 157 amino acids with an N-terminal RNA-recognition motif and a C-terminal glycine-rich domain, and thus the cDNA clone was designated as Nicotiana tabaccum glycine-rich RNA-binding protein-1 (NtGRP1). Expression of NtGRP1 was upregulated under flooding stress and also increased, but at much lower levels, under conditions of cold, drought, heat, high salt content, and abscisic acid treatment. RNA homopolymer-binding assay showed that NtGRP1 binds to all the RNA homopolymers tested with a higher affinity to poly r(G) and poly r(A) than to poly r(U) and poly r(C). Nucleic acid-binding assays showed that NtGRP1 binds to ssDNA, dsDNA, and mRNA. NtGRP1 suppressed expression of the fire luciferase gene in vitro, and the suppression of luciferase gene expression could be rescued by addition of oligonucleotides. Collectively, the data suggest NtGRP1 as a negative modulator of gene expression by binding to DNA or RNA in bulk that could be advantageous for plants in a stress condition like flooding.

Optimization of Lipase-Catalyzed Interesterification for Production of Human Milk Fat Substitutes by Response Surface Methodology (반응표면분석에 의한 모유대체지의 효소적 합성조건 최적화)

  • Son, Jeoung-Mae;Lee, Jeung-Hee;Xue, Cheng-Lian;Hong, Soon-Taek;Lee, Ki-Teak
    • Korean Journal of Food Science and Technology
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    • v.43 no.6
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    • pp.689-695
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    • 2011
  • 1,3-Dioleoyl-2-palmitoylglycerol (OPO)-rich human milk fat substitute (HMFS) was synthesized from tripalmitin (PPP)-rich fraction and oleic ethyl ester by a lipase-catalyzed interesterification. Response surface methodology (RSM) was employed to optimize the presence of palmitic acid at sn-2 position ($Y_1$, %) and of oleic acid at sn-1,3 ($Y_2$, %), with the reaction factors as substrate molar ratio of PPP-rich fraction to oleic ethyl ester ($X_1$, 1:4, 1:5 and 1:6), reaction temperature ($X_2$, 50, 55 and $60^{\circ}C$), and time ($X_3$, 3, 7.5 and 12 h). The optimal conditions for HMFS synthesis were predicted at the reaction combination of $55^{\circ}C$, 3 h and 1:6 substrate ratio. HMFS re-synthesized under the same conditions displayed 70.70% palmitic acid at the sn-2 position and 69.58% oleic acid at the sn-1,3 position. Reaction product was predominantly (90.35%) triacylglycerol (TAG) was observed in which the major TAG species, OPO, comprised 31.24%.

A MOLECULAR BIOLOGICAL STUDY ON THE EXPRESSION PATTERN AND FUNCTIONAL PROTEIN STRUCTURES OF PROLINE-RICH PROTEINS IN HUMAN SALIVARY GLANDS (사람의 타액선에서 proline-rich protein의 발현양상과 기능적 단백 구조에 대한 분자생물학적 연구)

  • Joo, Jae-Yong;Lee, Suk-Keun;Park, Young-Wook
    • Journal of the Korean Association of Oral and Maxillofacial Surgeons
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    • v.28 no.1
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    • pp.31-41
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    • 2002
  • Proline-rich proteins (PRPs) are major components of human saliva. In order to know the biological roles of PRPs, we explored the expression pattern and functional protein structures of PRPs by the immunohistochemical and various molecular biological methods. Polyclonal antibody against human gPRP was generated from rabbit by the injection of oral exfoliated cells specially treated by urea and SDS buffer. The PRPs began to be expressed both in the acinar cells and ductal cells from the EIDS (Early Intermediate Developmental Stage) of fetal salivary glands and became intense in the salivary epithelium in the LDS (Late Developmental Stage) and adult salivary glands. The polyclonal antibody against the gPRP showed the cross-reactivity with aPRP and bPRP, these results were relevant to the high homology among subtypes of PRP. However, the simulated protein structures of PRPs showed the characteristic repetitive whorling domains except the N-terminal signal peptide. The whorling domains were also contained the multiple amino acids of glutamine and glycine, which may provide the receptor binding or cross-linking sites of PRPs.

Effects of Ecklonia cava Extract on Neuronal Damage and Apoptosis in PC-12 Cells against Oxidative Stress

  • Shin, Yong Sub;Kim, Kwan Joong;Park, Hyein;Lee, Mi-Gi;Cho, Sueungmok;Choi, Soo-Im;Heo, Ho Jin;Kim, Dae-Ok;Kim, Gun-Hee
    • Journal of Microbiology and Biotechnology
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    • v.31 no.4
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    • pp.584-591
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    • 2021
  • Marine algae (seaweed) encompass numerous groups of multicellular organisms with various shapes, sizes, and colors, and serve as important sources of natural bioactive substances. The brown alga Ecklonia cava Kjellman, an edible seaweed, contains many bioactives such as phlorotannins and fucoidans. Here, we evaluated the antioxidative, neuroprotective, and anti-apoptotic effects of E. cava extract (ECE), E. cava phlorotannin-rich extract (ECPE), and the phlorotannin dieckol on neuronal PC-12 cells. The antioxidant capacities of ECPE and ECE were 1,711.5 and 1,050.4 mg vitamin C equivalents/g in the ABTS assay and 704.0 and 474.6 mg vitamin C equivalents/g in the DPPH assay, respectively. The dieckol content of ECPE (58.99 mg/g) was approximately 60% higher than that of ECE (36.97 mg/g). Treatment of PC-12 cells with ECPE and ECE increased cell viability in a dose-dependent manner. Intracellular oxidative stress in PC-12 cells due to ECPE and ECE decreased dose-independently by up to 63% and 47%, respectively, compared with the stress control (323%). ECPE reduced the production of the pro-apoptotic proteins Bax and caspase-3 more effectively than ECE. Early and late apoptosis in PC-12 cells were more effectively decreased by ECPE than ECE treatments. From the results obtained in this study, we concluded that ECPE, which is rich in phlorotannins, including the marker compound dieckol, may be applied to the development of functional materials for improving cognition and memory.

Abundance of Autotrophic Picoplankton and Their Contribution to Phytoplankton Biomass in Korean Lakes (국내 호소에서 autotrophic picoplankton의 밀도 및 식물플랑크톤 생물량에 대한 기여도)

  • Kim, Bom-Chul;Jun, Man-Sig;Heo, Woo-Myung;Kim, Ho-Sub;Choi, Yon-Kyu
    • Korean Journal of Ecology and Environment
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    • v.34 no.3 s.95
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    • pp.141-152
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    • 2001
  • Abundance of autotrophic picoplankton (APP) and their contribution to phytoplankton biomass were assessed in seven brackish lagoons and five freshwater reservoirs in the summer season. Phycocyanin-rich picocyanobacteria dominated APP in lagoons, while phycoerythrin-rich picocyanobacteria dominated APP in freshwater reservoirs. The cell density of APP ranged from $3.6{\times}10^3$ to $5.0{\times}10^6\;cells/ml$ (median $2.5{\times}10^5$) in brackish lagoons and from $3.8{\times}10^4$ to $3.6{\times}10^5\;cells/ml$ (mdian $1.3{\times}10^5$) in reservoirs. Carbon biomass ranged from 1.0 to $1,385.0\;{\mu}gC/L$ in lagoons and from 15.3 to $128.2\;{\mu}gC/L$ in reservoirs. APP cell density in Lake Kyungpo was over $10^6\;cells/ml$in all three surveys, which is one of the highest values recorded in all over the world. During the thermal stratification in Lake Soyang, the maximum abundance of APP and their maximum contribution to phytoplankton biomass were observed near the thermocline. This study showed that APP sometimes can contribute significantly to phytoplankton biomass both in lagoons and reservoirs with the range from 0.1 to 85.0%. APP which have been overlooked in the past studies appears to be important primary producers in Korean lake ecosystem.

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Effect of Kumquat on N-nitrosodimethylamine Formation (금귤이 N-nitrosodimethylamine의 생성에 미치는 영향)

  • 이수정;신정혜;성낙주
    • Journal of Food Hygiene and Safety
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    • v.17 no.4
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    • pp.201-205
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    • 2002
  • When it added to each designed diet groups such as control, nitrate rich, amine rich and nitrate-amine rich diet under simulated gastric conditions, effect of kumquat (Fortunella mararita) juice on formation of N-nitrosodimethylamine (NDMA) was studied. Inhibition on NDMA formation was the highest in the amine rich diet, as 69.4 $\pm$2.4%, when the juice of 10m1 added to its digestate. Phenolic portion of $C_{18}$ sep-pak cartridge in kumquat juice were separated into 20 kinds of a phenolic compounds using HPLC. These phenolic fractions such as faction no. 1, 2, 3, 4 and 5 inhibited from 3.0 $\pm$ 1.2% to 66.5 $\pm$2.0% NDMA formation in the reaction system which was mixture of nitrite and dimethylamine.

Skin Anti-aging Effect of Forsythia viridissima L. Extract (연교추출물의 피부 항노화 효과)

  • Kim, Mi-Jin;Kim, Ja-Young;Jung, Teak-Kyu;Choi, Sang-Won;Yoon, Kyung-Sup
    • KSBB Journal
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    • v.21 no.6 s.101
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    • pp.444-450
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    • 2006
  • Skin anti-aging effect of Forsythia viridissima L. extract was evaluated by using antioxidant assay, expression of type I procollagen, and UVA-induced matrix metalloproteinase-1 in human dermal fibroblasts. Matairesinol-rich Forsythia viridissima L. extract was showed the scavenging activity of radicals and reactive oxygen species with the $IC_{50}$ values of $4.50\;{\mu}m/ml$ against 1,1-diphenyl-2-picrylhydrazly radical and $542.43\;{mu}m/ml$ against superoxide radicals in the xanthine/xanthine oxidase system, respectively. The type I procollagen was increased 33.76% by treatment with matairesinol-rich Forsythia viridissima L. extract, and UVA-induced MMP-1 was reduced 35.78% in a dose dependent manner. In the human skin irritation test, 2% matairesinol-rich Forsythia viridissima L. extract did not show any adverse effect. Also, the clinical study indicated that a cream group treated with 0.2% matairesinol-rich Forsythia viridissima L. extract significantly reduced skin wrinkles, as compared with a non-treated cream group (p < 0.05). These results suggest that Forsythia viridissima L. extract may be useful as a potential source of functional anti-aging cosmetics.

Neuroprotective Effects of Phlorotannin-Rich Extract from Brown Seaweed Ecklonia cava on Neuronal PC-12 and SH-SY5Y Cells with Oxidative Stress

  • Nho, Jin Ah;Shin, Yong Sub;Jeong, Ha-Ram;Cho, Suengmok;Heo, Ho Jin;Kim, Gun Hee;Kim, Dae-Ok
    • Journal of Microbiology and Biotechnology
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    • v.30 no.3
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    • pp.359-367
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    • 2020
  • Neurodegenerative disorders in the elderly are characterized by gradual loss of memory and cognitive function. Oxidative stress caused by reactive oxygen species is associated with progressive neuronal cell damage and death in Alzheimer's disease, one of the most common neurodegenerative disorders. An edible brown seaweed, Ecklonia cava, contains a variety of biologically active compounds such as phlorotannins. In this study, we comparatively evaluated the total phenolic content, antioxidant capacity, and neuroprotective effects of the phlorotannin-rich extract from E. cava (PEEC). The total phenolic content of PEEC and dieckol was 810.8 mg gallic acid equivalents (GAE)/g and 996.6 mg GAE/g, respectively. Antioxidant capacity of PEEC was 1,233.8 mg vitamin C equivalents (VCE)/g and 392.1 mg VCE/g determined using ABTS and DPPH assays, respectively, while those of dieckol were 2,238.4 mg VCE/g and 817.7 mg VCE/g. High-performance liquid chromatography results revealed 48.08 ± 0.67 mg dieckol/g of PEEC. PEEC had neuroprotective effects in pheochromocytoma (PC-12) and human neuroblastoma (SH-SY5Y) cells against H2O2- and AAPH-induced oxidative damage, partly due to reduced intracellular oxidative stress. PEEC treatment inhibited acetylcholinesterase and butyrylcholinesterase in a dose-dependent manner. Taken together, these findings suggest that PEEC is a good source of antioxidants and neuroprotective materials.

Physicochemical Profiles of Chub Mackerel Scomber japonicus Bones as a Food Resource

  • Cho, Suengmok;Kim, Soo-Yuen;Yoon, Minseok;Kim, Seon-Bong
    • Fisheries and Aquatic Sciences
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    • v.17 no.2
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    • pp.175-180
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    • 2014
  • The present study was conducted to characterize physicochemical properties of chub mackerel bones (CMB) to evaluate its potential as a food resource. The proximate composition of CMB showed 40.4% moisture, 13.8% crude fat, 15.2% crude protein, and 28.7% ash. The major minerals in CMB were calcium (26.27 g/100 g) and phosphorus (15.88 g/100 g). The amino acids were rich in glycine, proline, glutamic acid, and alanine. The contents of total and neutral lipids, glycolipid and phospholipid were shown to be 16.05%, 95%, 2.32%, and 3.15%, respectively. The major fatty acids were C22:6, C16:0, C18:1, C20:5, C18:0, C17:0, C14:0, C20:1 in order. The fatty acid contents of total and neutral lipid were in a range of 39.25% and 44.54% for saturated and 33.61% and 34.05% for polyunsaturated, respectively. The breaking strength and hardness of intact CMB were 10.01 and $50.03kgf/cm^2$, whereas those of CMB heated for 45 min at $121^{\circ}C$ were 0.40 and $1.94kgf/cm^2$, respectively.

On the Microstructures of Al-Cu-Ni Ternary Alloys by Upward Continuous Casting (상향식 연속주조법에 의한 Al-Cu-Ni 3원합금의 응고조직에 관한 연구)

  • Kwon, Kee-Kyun;Lee, Kye-Wan
    • Journal of Korea Foundry Society
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    • v.10 no.5
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    • pp.426-434
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    • 1990
  • Continuous casting of the Al-Cu-Ni ternary eutectic alloys was carried out by the upward continuous casting process. The morphology of the ternary eutectic growth and the stability of solid-liquid interface were investigated under various growth conditions. It was possible to get the planar solid-liquid interface at the condition of $G_L/R=3.59{\times}10^3^{\circ}C\;sec/mm^2$ in Al-Cu-Ni ternary eutectic alloys. In Al-rich, Ni-rich and Cu-rich hypereutectics of Al-Cu-Ni ternary alloys, primary ${\alpha},\;{\tau}\;and\;{\theta}$ dendrites have grown as the leading phase ahead of the ternary eutectic composites.

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