• Title/Summary/Keyword: Fungal Diversity

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Molecular Phylogeny and Morphology Reveal the Underestimated Diversity of Mortierella (Mortierellales) in Korea

  • Lee, Jae-Sung;Nam, Bora;Lee, Hyang Burm;Choi, Young-Joon
    • The Korean Journal of Mycology
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    • v.46 no.4
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    • pp.375-382
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    • 2018
  • Members of the genus Mortierella (Mortierellales) are filamentous fungi, which are found on nearly all substrates, but more frequently in soil. Till date, 7 species of Mortierella have been reported in Korea, but being a ubiquitous group with high species diversity in temperate zones, this number is still low. During a survey of fungal biodiversity in Korea, we collected many isolates of Mortierella, and through morphological and molecular phylogenetic analyses, identified them to be 3 previously unrecorded species, namely, M. chienii, M. epicladia, and M. gamsii. A total of 10 Mortierella species in Korea, including the 3 species reported in the present study, are widely distributed in 5 out of 7 phylogenetic groups of this genus. This indicates that the diversity of Mortierella was so far underestimated in Korea. Multi-locus sequence analysis is required to provide a more reliable backbone for some uncertain phylogenetic groupings and to more clearly define a species of Mortierella, which would encourage deeper research in the diversity and ecological roles of Mortierella and allied genera.

Comparative Analysis of Endophytic Fungi Isolated from Dominant Hydrophytes in Junam and Dongpan Wetland (주남저수지와 동판저수지의 수생식물에서 분리된 내생균류의 비교 분석)

  • You, Young-Hyun;Park, Jong Myong;Han, Kyung-Sook;Park, Jong-Han;Kim, Jong-Guk
    • The Korean Journal of Mycology
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    • v.43 no.2
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    • pp.92-98
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    • 2015
  • Hydrocharis dubia Backer and Salvinia natans All. were sampled from the Junam and Dongpan reservoirs, representative freshwater wetlands of Korea. A total of 19 endophytic fungal strains were isolated from hydrophytes native to the Junam wetlands and 5 strains were isolated from the Dongpan wetlands. Depending on phylogenetic analysis based on internal transcribed spacer (ITS) region, strains from Junam belonged to 11 genera and from Dongpan belonged to 5 genera. Fusarium, Phoma and Talaromyces were commonly distributed genera from two wetlands. The fungal diversity index showed clear differences between each wetlands or each host hydrophyte. Above all, the highest diversity value was observed from Salvinia natans All., which have been reported as promising biological resources as eutrophication controller in environmental ecology.

Undescribed Fungal Species of Eupenicillium, Mortierella, and Trichoderma Isolated in the Vicinity of Demilitarized Zone in Yeoncheon-gun, Gyeonggi-do, Korea (경기도 연천비무장지대 근역에서 분리한 국내 미기록 Eupenicillium, Mortierella, Trichoderma 진균 종 보고)

  • Ahn, Geum Ran;Kim, Ji Eun;Oh, Yun Seok;Lee, Kyoung Min;Jin, Hyeop;Kim, Min Uk;Kim, Jun Young;Kim, Seong Hwan
    • The Korean Journal of Mycology
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    • v.46 no.4
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    • pp.359-367
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    • 2018
  • As an effort to explore fungal diversity, fungal survey was undertaken in 2017 in the vicinity of demilitarized zone (DMZ) located in Yeoncheon-gun, Gyeonggi-do, Korea. For the survey, wild plants and soils were sampled and subjected to fungal isolation. A total of 18 genera and 23 species including five unrecorded fungal species, Mortierella sclerotiella, M. sossauensis, M. verticillate, Eupenicillium saturniforme, and Trichoderma hispanicum, were obtained from the survey. This study described their morphological characteristics including colony features formed on media, light microscopic images and molecular characteristics of nucleotide sequences of the internal transcribed spacer (ITS) region, 18S and 28S rDNA, ${\beta}-tubulin$ gene, calmodulin, and translation elongation factor $1{\alpha}$ ($tef1{\alpha}$) nDNA genes.

Diversity and Biological Activities of Endophytic Fungi of $Emblica$ $officinalis$, an Ethnomedicinal Plant of India

  • Nath, Archana;Raghunatha, Prajwal;Joshi, S.R.
    • Mycobiology
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    • v.40 no.1
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    • pp.8-13
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    • 2012
  • In the present study, an attempt to evaluate the antimicrobial and antioxidant activity of fungal endophytes inhabiting $Emblica$ $officinalis$ has been made keeping in view the medicinal importance of the selected host plant in Indian traditional practices. A total of four endophytic fungi belonging to Phylum Ascomycetes were isolated from different parts of the plant which were characterized morphologically and by using rDNA-internal transcribed spacer. The most frequently isolated endophyte was $Phomopsis$ sp. The antioxidant activity by 2, 2-diphenyl-1-picrylhydrazyl (DPPH) and reducing power assay, and total phenol were evaluated using ethanolic extract of endophytic fungi. DPPH activities in all the ethanolic extract increased with the increase in concentrations. Endophytes, $Phomopsis$ sp. and $Xylaria$ sp. showed highest antioxidant activity and also had the higher levels of phenolics. Antimicrobial activity of fungal extract were tested against four bacteria namely, $Escherichia$ $coli$ MTCC730, $Enteroccocus$ $faecalis$ MTCC2729, $Salmonella$ $enterica$ ser. $paratyphi$ MTCC735 and $Streptococcus$ $pyogenes$ MTCC1925, and the fungus $Candida$ $albicans$ MTCC183. In general, the fungal extracts inhibited the growth of test organisms except $E.$ $coli$.

Fungal Flora of Mt. Paekwoon(I) (백운산지역(白雲山地域)의 고등균류(高等菌類)(I))

  • Seok, Soon Ja;Kim, Yang Sup;Lee, Kyung Joon
    • Journal of Korean Society of Forest Science
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    • v.83 no.4
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    • pp.556-562
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    • 1994
  • To investigate the fungal diversity in Mt. Paekwoon, higher fungi were collected in July, 1991 from the two locations of Seoul National University Forests in Kwangyang-gun, Chonnam Province. A total of 137 fungal species were collected and classified. Following six species were identified as new species unrecorded in Korea. Their morphological and taxonomic features including microscopic characteristics of spores and cystidia were also reported in this paper. Marasmius pulcherripes Peck ; Agaricus purpurellus(Moller) Moller ; Coprinus echinosporus Buller ; Xerocomus nigromaculatus Hongo ; Boletellus shichianus(Teng & Ling) Teng ; Russula kansaiensis Hongo.

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Community Structure of Ectomycorrhizal Fungal communities Colonizing Quercus spp. in Limestone Areas of Korea (석회암 지대 참나무속 식물에 공생하는 외생균근균의 군집구조)

  • Lee, Jong-Chul;Park, Hyeok;Eom, Ahn-Heum
    • The Korean Journal of Mycology
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    • v.49 no.1
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    • pp.109-118
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    • 2021
  • In this study, we analyzed the diversity of ectomycorrhizal (ECM) fungal communities of Quercus spp. roots in the limestone area. We identified 45 generd of ECM using next generation sequencing (NGS) analysis. Soil chemical composition analysis confirmed soil pH, substitution calcium concentration, total nitrogen content, organic phosphate, and organic matter content. Shannon's Index was calculated according to the changes in soil chemical composition. The results of cluster analysis showed that Sebacina, Tomentella, Tuber, Densospora, Inocybe, Suillus, and Piloderma were the main genera of symbiotic ECM fungi that thrived in soil with high pH and calcium content.

Characterization of Newly Recorded Talaromyces veerkampii Isolated from Field Soil in Korea based on Morphology and Multigene Sequence Analysis

  • Mahesh Adhikari;Hyun Seung Kim;Hyo Bin Park;Ki Young Kim;In Kyu Lee;Eun Jeong Byeon;Ji Min Woo;Hyang Burm Lee;Youn Su Lee
    • The Korean Journal of Mycology
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    • v.50 no.4
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    • pp.347-355
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    • 2022
  • A fungal isolate belonging to the phylum Ascomycota was isolated and identified as Talaromyces veerkampii in 2017 during a survey of fungal diversity in field soils in Korea. This fungal isolate was identified and described based on macro- and micromorphological and molecular characterization. The identification was also based on partial 18S-ITS1-5.8S-ITS2-28S rDNA and calmodulin (CaM)-encoding gene sequencing data. Talaromyces veerkampii has not been previously reported in Korea. Thus, we report here a newly discovered species from soil in Korea along with its morphological and molecular characteristics.

Additions to the Knowledge of the Fungal Order Eurotiales in Korea: Eight Undescribed Species

  • Thuong T. T. Nguyen;Ki Hyun Kang;Dong Hee Kim;Su Jin Kim;Hye Yeon Mun;Wonsu Cheon;Hyang Burm Lee
    • Mycobiology
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    • v.51 no.6
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    • pp.417-435
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    • 2023
  • Eurotiales is a relatively large order of Ascomycetes, well-known for their ability to produce secondary metabolites with potential beneficial applications. To understand their diversity and distribution, different environmental sources including soil, freshwater, insect, and indoor air were investigated. Eight strains of Eurotiales were isolated and identified based on their morphological characters and a multi-gene phylogenetic analysis of the ITS, BenA, CaM, and RPB2 regions. We identified eight taxa that were previously not reported from Korea: Aspergillus baeticus, A. griseoaurantiacus, A. spinulosporus, Penicillium anthracinoglaciei, P. labradorum, P. nalgiovense, Talaromyces atroroseus, and T. georgiensis. Detailed descriptions, illustrations, and phylogenetic tree for the eight new records species are presented, and information regarding the records is also discussed.

Unrecorded Fungi Isolated from Fire Blight-controlled Apple Orchard Soil in Korea

  • Soo Young Chi;Jun Woo Cho;Hyeongjin Noh;Minseok Kim;Ye Eun Kim;Seong Hwan Kim
    • The Korean Journal of Mycology
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    • v.51 no.4
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    • pp.491-504
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    • 2023
  • To explore fungal diversity in orchard soil where fire-blighted apple trees are buried, we collected soil samples from apple orchards in Chungju, Korea. Fungal isolates were obtained from DG18 agar and identified at the species level based on morphological features and phylogenetic analyses. The colony characteristics and microstructures were examined using a light microscope and a scanning electron microscope after culturing on potato dextrose agar (PDA), malt extract agar (MEA), Czapek yeast agar (CYA), and oatmeal agar (OA) The PCR-amplified products of the ITS1-5.8S-ITS2 region and 28S large subunit of the nuclear ribosomal RNA gene, as well as partial sequences of the β-tubulin, calmodulin, and translation elongation factor 1-α genes were sequenced and analyzed phylogenetically. Seven previously unknown fungal species were explored in Korea. All samples, including Aspergillus aureolatus, Botryotrichum atrogriseum, Dactylonectria novozelandica, Fusarium denticulatum, Paecilomyces tabacinus, Sarcopodium tibetense and Talaromyces stollii, had ascomycetes. Herein, we report their descriptions and features.

Isolation and Characterization of Blakeslea trispora Isolated from Gut of Grasshopper and Soldier Fly Larva in Korea

  • Nguyen, Thi Thuong Thuong;Lee, Hyang Burm
    • The Korean Journal of Mycology
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    • v.44 no.4
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    • pp.355-359
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    • 2016
  • During a survey of fungal diversity in insect guts in Korea, two fungal strains, EML-PGH2 and EML-PUKI88, were isolated from the gut of grasshopper and soldier fly larvae inhabiting the bulrush plants at a pond located in the Chonnam National University Arboretum, Gwangju, Korea. Based on their morphological characteristics and a phylogenetic analysis of the internal transcribed spacer (ITS1 and ITS2) and 5.8S rDNA sequences, the strains were identified as Blakeslea trispora. To our knowledge, the zygomycete species B. trispora has not been previously described in Korea.