• 제목/요약/키워드: Fragment size

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Pulsed-field gel electrophoresis (PFGE)를 이용한 Listeria monocytogenes의 molecular typing (Molecular typing of Listeria monocytogenes using pulsed-field gel electrophoresis (PFGE))

  • 채희선;김주영;김연하;양윤모;진경선;신방우;이정학
    • 한국동물위생학회지
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    • 제30권3호
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    • pp.353-362
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    • 2007
  • A total of 1,354 samples was collected from bovine and porcine carcass from January 2005 to December 2006 in a slaughter house. Twenty five strains(1.8%) of Listeria monocytogenes were isolated from 1,354 samples using selective media. Ten(1.4%) L monocytogenes were isolated from the 677 of bovine carcasses, and 15(2.2%) were isolated from the 677 of porcine carcasses. Among 15 L mono-cytogenes from porcine, 11 siolates were serovars 1/2c, followed by 1/2b (3 strains, 20.0%) and 1/2a(1 strain) Out of 10 bovine samples, positive cases in 1/2a were 9 strains (90.0%), 1/2b were 1 strains(10.0%). PCR primers were selected to amplify a 520-base pair(bp) DNA fragment from the listeolysin O gene (hlyA) of L mono-cytogenes. A 520-bp product was detected in PCR with DNA from L monocytogenes, but not from the other Listeria species tested. A total of 25 L monocytogenes strains were analysed by PFGE after digestion with Apa I. PFGE analysis of genomic DNA showed the $14{\sim}18$ fragments ranging in size from 30 to 550 kb, resulting in 14 patterns.

RAPD 방법을 이용한 반하류 한약재의 감별 연구 (RAPD Analysis on the Species of Pinelliae Tuber)

  • 배명효;김규열;정유헌;최호영
    • 대한한의학회지
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    • 제20권4호
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    • pp.16-22
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    • 2000
  • This study intends to report the significance of several experimental results obtained from analysing the genes extracted from the plants and herbal medicine such as P. temalta (Thunb.) Breit, A. amurense var serratum Nakai, A. erubescens (Wall.) Schott, Pinelliae Tuber and Arisaematis Tuber, mainly by the method of RAPD(randomly amplified polymorphic DNA) and the method of RFLP(restriction fragment length polymorphism) on ITS(internal transcribed spacer) region. Genomic DNA could be extracted from both original plants and dried materials. DNA fragments of P. temata kind and A. amurense kind showed the same aspect separately within the same species under the method of RAPD using random primer, while various aspects(polymorphism) were discovered among different species. In RAPD analysis by uniprimer, common bands were extracted from all types of P. temata in the case of uniprimer #4, which were distinguished from the kind of A. amurense. Other polymorphic bands appeared in between different A. amurense species as well. In the case of uniprimer #11, particular band came out in the kind of P. temata. On the other hand, in the case of uniprimer #5, #6, and #8, various bands(polymorhism) were revealed in both kinds of P. temata and A. amurense. Although further study is needed to ascertain whether these results are due to the differences of species, kinds, or growing place, the results could be used as a scientific method of identifying the substitutes for A. amurense genus. The author believes that as if P. temata class of plants used in this experiment are different among themselves in terms of the shape, size and property, those are clearly a class of P. temata or belong to the same genus.

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황해산 참조기 (Pseudosciaena polyactis Bleeker)의 mitochondrial DNA 분석 (Mitochondrial DNA Analysis of the Small Yellow Croaker (Pseudosciaena polyactis Bleeker) in the Yellow Sea)

  • 황규린;이영철;장정순;허회권
    • 한국수산과학회지
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    • 제27권5호
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    • pp.613-619
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    • 1994
  • 황해에 서식하는 참조기(Pseudosciaena polyactis Bleeker) 각 계군의 유전적 차이점을 분석하기 위하여 중국에서 3지역(Zhoushan, Shanghai, Qingdao), 한국 2지역(목포, 인천)에서 채집된 참조기로부터 mitochondrial DNA(mtDNA)의 RFLP(제한효소 절편 다형현상)를 분석하였다. 총 18종의 제한효소를 이용하여 처리한 결과 5개 집단 모두 동일한 크기인 $16.9{\pm}0.6kb$의 mtDNA를 소유한 것으로 나타났으며 이는 다른 어류군들과 유사한 크기였다. 참조기 mtDNA에 대한 RFLP 분석을 행한 결과 각 집단 마다 대략 40여개의 절편이 관찰되었고 5개 집단 모두 동일한 mtDNA 절편양상을 보였으나 사용된 제한효소 중 좌ApaI, EcoRI, PstI, SstII 및 SmalI에서 중국과 한국 집단내 또는 집단간 절편 양상의 차이도 관찰할 수 있었다.

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Ligand Based CoMFA, CoMSIA and HQSAR Analysis of CCR5 Antagonists

  • Gadhe, Changdev G.;Lee, Sung-Haeng;Madhavan, Thirumurthy;Kothandan, Gugan;Choi, Du-Bok;Cho, Seung-Joo
    • Bulletin of the Korean Chemical Society
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    • 제31권10호
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    • pp.2761-2770
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    • 2010
  • In this study, we have developed QSAR models for a series of 38 piperidine-4-carboxamide CCR5 antagonists using CoMFA, CoMSIA and HQSAR methods. Developed models showed good statistics in terms of $q^2$ and $r^2$ values. Best predictions obtained with standard CoMFA model ($r^2$ = 0.888, $q^2$ = 0.651) and combined CoMSIA model ($r^2$ = 0.892, $q^2$ = 0.665) with electrostatics and H-bond acceptor parameter. The validity of developed models was assessed by test set of 9 compounds, which showed good predictive correlation coefficient for CoMFA (0.804) and CoMSIA (0.844). Bootstrapped analysis showed statistically significant and robust CoMFA (0.968) and CoMSIA (0.936) models. Best HQSAR model was obtained with a $q^2$ of 0.662 and $r^2$ of 0.936 using atom, connection, hydrogen, donor and acceptor as parameters and fragment size (7-10) with optimum number of 6 components. Predictive power of developed HQSAR model was proved by test set and it was found to be 0.728.

하악과두골절 환자의 일반방사선사진상과 전산화단층사진상의 비교 연구 (A COMPARATIVE STUDY BETWEEN THE IMAGINGS OF CONVENTIONAL RADIOGRAMS AND COMPUTED TOMOGRAMS IN PATIENTS WITH CONDYLAR FRACTURES)

  • 조수범;고광준
    • 치과방사선
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    • 제25권2호
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    • pp.447-457
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    • 1995
  • The subjects of this study consisted of 75 patients with 83 condylar fractures, who were admitted to Chonbuk National University Hospital from Jan. 1988 to Oct. 1995. The purpose of this study was to compare the imagings of conventional radiograms with those of computed tomograms and to aid in the diagnosis of condylar fractures. Also the author evaluated the usefulness of 3-dimensional reconstructive imaging in condylar fractures. The obtained results were as follows: 1. The condylar fractures were observed mainly between 2nd and 4th decades, but there was no significant difference of incidence between decades. The incidence of condyalr fractures by fracture site was subcondyalr(44.6%), condylar head(36.1%), condylar neck(19.3%) in orders. 12 of 30 condylar head fractures were sagittal splitting fractures. 2. According to the relationship of condylar head to articular fossa, the incidence of condylar fractures was higher in Type II and Type m. And the incidence of subcondylar fractures was higher in Type I classified by Mclennan. But there was no significant difference of incidence between Types. 3. The more the fracture fragments were displaced, the easier the fracture patterns were detected in conventional radiograms. The computed tomograms were also useful in the diagnosis of sagittal splitting fractures which were displaced mesially. 4. The 3-dimensional reconstructive imaging were useful in the evaluation of the fracture patterns, but they were not useful when the size of fragment and the degree of displacement were small.

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Genomic Heterogeneity in Clinical Strains of Mycobacterium tuberculosis, M. terrae Complex, M. gordonae, M. avium-intracellulae Complex and M. fortuitum by Pulsed-Field Gel Electrophoresis

  • Kim, Jeong-Ran;Kang, Bong-Seok;Ko, Jeong-Heon;Park, Jin-Suk;Kim, Sang-Jae;Bai, Gil-Hwan;Chung, Tae-Ho;Nam, Kyung-Soo;Choi, Yong-Kyung;Choe, In-Sung;Chung, Tae-Wha;Lee, Young-Choon;Kim, Cheorl-Ho
    • BMB Reports
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    • 제29권6호
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    • pp.569-573
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    • 1996
  • Clinical strains of Mycobacterium tuberculosis, M. terrae complex, M. gordonae, M. avium-intracellulae complex, and M. fortuitum from Korean patients were isolated and analyzed by comparing large restriction fragment (LRF) patterns produced by digestion of genomic DNA with infrequent-cutting endonucleases like AsnI and XbaI. and pulsed-field gel electrophoresis (PFGE). Three M. tuberculosis, two M. terrae complex, two M. gordonae, two M. avium-intracellulae complex, and two M. fortuitum strains were compared by using AsnI and XbaI. and this allowed easy visual separation of all epidemiologically unrelated strains. PFGE exhibits different DNA restriction patterns which are easy to compare. Genome size of the strains roughly ranged from 3020 to 3335 kb. The LRF patterns are useful for epidemiologic studies of tuberculosis with regard to drug resistance.

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Genetic Diversity of Sweet potato feathery mottle virus from Sweet Potatoes in Korea

  • Kwak, Hae-Ryun;Kim, Mi-Kyeong;Jung, Mi-Nam;Lee, Su-Heon;Park, Jin-Woo;Kim, Kook-Hyung;Ko, Sug-Ju;Choi, Hong-Soo
    • The Plant Pathology Journal
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    • 제23권1호
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    • pp.13-21
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    • 2007
  • Sweet potato feathery mottle virus(SPFMV) is one of the most prevalent viruses infecting sweet potatoes and occurs widely in sweet potato cultivating areas in Korea. To assess their genetic variation, a total of 28 samples infected with SPFMV were subjected to restriction fragment length polymorphism(RFLP) analysis using DNAs amplified by RT-PCR with specific primer sets corresponding to the coat protein(CP) region of the virus. The similarity matrix by UPGMA procedure indicated that 28 samples infected with SPFMV were classified into three groups based on the number and size of DNA fragments by digestion of CP-encoding regions with 7 enzymes including SalI, AluI, EcoRI, HindIII, FokI, Sau3AI, and DraI bands. Four primer combinations out of 5 designed sets were able to differentiate SPFMV and sweet potato virus G infection, suggesting that these specific primers could be used to differentiate inter-groups of SPFMV. Sequence analysis of the CP genes of 17 SPFMV samples were 97-99% and 91-93% identical at the intra-group and inter-groups of SPFMV, respectively. The N-terminal region of the CP is highly variable and examination of the multiple alignments of amino acid sequences revealed two residues(residues 31 and 32) that were consistently different between SPFMV-O and SPFMV-RC.

발파석의 비산과 낙하를 조절하기 위한 발파 설계 (Blast Design for Controlled Augmentation of Muck Pile Throw and Drop)

  • 피유시 라이;양형식
    • 터널과지하공간
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    • 제20권5호
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    • pp.360-368
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    • 2010
  • 이 논문은 발파석의 비산과 낙하를 조절하여 파쇄석이 사면의 낮은 쪽 소단에 분산될 수 있도록 한 노천발파에 대한 사례연구이다. 비산이 횡적인 분산과 파쇄석 더미의 이완을 초래하는 동안 낙하는 굴착기에 의한 굴착이 용이하도록 파쇄석 더미의 높이를 낮춰주는 역할을 한다. 이런 면에서 이 논문에서는 몇몇 발파설계 변수들을 조정하는데 주안점을 두었다. 대상 사면은 사암 벤치로서 벤치의 평균 높이는 22~24 m이다. 이 사면은 굴착심도가 14 m인 10 $m^3$ 용량의 로우프 쇼벨 작업이 가능하도록 조성되었다. 비산과 낙하를 조절한 새로운 발파설계 결과를 이 현장에서 적용되고 있던 상단(10~14 m)과 하단(12~15 m)의 이단식 발파 결과와 비교하였다. 파쇄석의 입도와 그 분포 및 쇼벨의 굴착 싸이클 시간들을 비교하였다.

Distribution of five common subtypes of spinocerebellar ataxia in the Korean population

  • Choi, In-Hee;Kim, Gu-Hwan;Lee, Beom-Hee;Choi, Jin-Ho;Yoo, Han-Wook
    • Journal of Genetic Medicine
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    • 제11권2호
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    • pp.69-73
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    • 2014
  • Purpose: Spinocerebellar ataxia (SCA) is a genetically heterogeneous disease for which more than 30 subtypes have been identified. However, 5 subtypes, SCA1, SCA2, SCA3, SCA6, and SCA7, account for more than 60% of cases. In this study, we report the distribution of these 5 subtypes in Korean patients. Materials and Methods: Six hundred and thirty-eight unrelated patients with a presumptive diagnosis of SCA were included in this study. Trinucleotide (CAG) repeat number (TNR) repeat number was determined using fluorescently labeled primers and fragment analysis. Results: A total of 128 unrelated patients (20.1% of all individuals tested) tested positive for SCA subtypes, including SCA1 (5 patients, 3.9% of those testing positive), SCA2 (38 patients, 29.7%), SCA3 (30 patients, 23.4%), SCA6 (39 patients, 30.5%), and SCA7 (16 patients, 12.5%). The mean copy number of pathogenic TNR alleles was $45{\pm}8.5$ for SCA1, $42{\pm}3.1$ for SCA2, $72{\pm}5.4$ for SCA3, $23{\pm}1.5$ for SCA6, and $50{\pm}11.4$ for SCA7. TNR copy number was inversely correlated with onset age in SCA2, SCA6, and SCA7. Conclusion: SCA2, SCA3, and SCA6 are common SCA subtypes in Korean patients and could be screened as a first-line test. Expanded pathogenic allele size was associated with early onset age.

Pichia pastoris에서 Human Lactoferrin의 발현 (Expression of Human Lactoferrin in Pichia pastoris)

  • 임소용;주인선;윤동훈;성창근
    • 한국식품영양과학회지
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    • 제26권4호
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    • pp.669-674
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    • 1997
  • 면역활성, 항균성 등의 기능성을 보여 식품첨가물로 전량 수입에 의존하여 사용되는 human lactoferrin을 진핵세포에서의 생산을 시도하였다. 우선, 항균성을 보이는 lactoferrin에 대하여 생육저해가 없는 host cell에 lactoferrin 유전자를 발현시키고자 lactoferrin에 대한 항균력을 실험한 결과 Pichia pastoris는 생육저해를 일으키지 않아 이를 lactoferrin 생산균주로 선정하였다. Pichia를 숙주로 하는 pHIL-SI expression vector에 lactoferrin 유전자를 삽입 하였을 때 genomic DNA에 유전자가 integration 되었다. 즉, transformant JY-1, JY-2는 PCR(polymerase chain reaction)과 southern blotting에 의하여 2.4Kb의 크기의 HLF(human lactoferrin) 유전자가 삽입되었음을 확인하였다. 유전자 발현을 검토한 결과 transformant JY-1는 immunoblotting에 의하여 lactoferrin 단백질 생산을 확인하였다. 배양시간에 따른 HLF의 생산성을 알아본 결과 48시간 이후에 75KDa의 HLF단백질이 분비됨을 확인하였다

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