Genetic Diversity of Sweet potato feathery mottle virus from Sweet Potatoes in Korea |
Kwak, Hae-Ryun
(Department of Plant Pathology, National Institute of Agricultural Science and Technology)
Kim, Mi-Kyeong (Department of Plant Pathology, National Institute of Agricultural Science and Technology) Jung, Mi-Nam (Mokpo Experiment Station, National Institute of Crop Science) Lee, Su-Heon (Department of Plant Pathology, National Institute of Agricultural Science and Technology) Park, Jin-Woo (Department of Plant Pathology, National Institute of Agricultural Science and Technology) Kim, Kook-Hyung (Department of Agricultural Biotechnology, Seoul National University) Ko, Sug-Ju (Jeonnam Agricultural Research and Extension Services) Choi, Hong-Soo (Department of Plant Pathology, National Institute of Agricultural Science and Technology) |
1 | Gibson, R. W., Mpembe, I., Alicai, T., Carey, E. E., Mwanga, R. O. M., Seal, S. E. and Vetten, H. J. 1998. Symptoms, etiology and serological analysis of sweet potato virus disease in Uganda. Plant Pathol. 47:95-102 DOI ScienceOn |
2 | Kreuze, J. F., Karyeija, R. F., Gibson, R. W. and Valkonen, J. P. T. 2000. Comparisons of coat protein gene sequences show that East African isolates of Sweet potato feathery mottle virus form a genetically distinct group. Arch. Virol. 145:567-574 DOI |
3 | Mori, M., Usugi, T., Hayashi, T. and Nishiguchi, M. 1994. Nucleotide sequence at the 3'-terminal region of sweet potato feathery mottle virus (ordinary strain, SPFMV-O) RNA. Biosci. Biotech. Biochem. 58:965-967 DOI ScienceOn |
4 | Ryu, K. H. and Choi, S. H. 2002. Molecular detection and analysis of Sweet potato feathery mottle virus from root and leaf tissues of cultivated sweet potato plants. Plant Pathol. J. 18:1217 |
5 | Ward, C. W. and Shukla, D. D. 1991. Taxonomy of potyviruses: current problems and some solutions. Intervirology 32:269-296 DOI |
6 | Kim, S. J., Ryu, K. H., Choi, J. K. and Park, W. M. 1998. Sequence analysis of coat protein and 3'-noncoding region for Korean and other strains of Sweet potato feathery mottle virus. Mol. Cells 6:777-785 |
7 | Mori, M., Sakai, J., Kimura, T., Usugi, T., Hayashi, T., Hanada, K. and Nishiguchi, M. 1995. Nucleotide sequence analysis of two nuclear inclusion body and coat protein genes of a sweet potato feathery mottle virus severe strain (SPFMV-S) genomic RNA. Arch. Virol. 140:1473-1482 DOI |
8 | Park, W. M., Kim, S. J., Ryu, K. H. and Chin, M. S. 1995. Characterization and detection of Sweet potato feathery mottle virus (SPFMV) from sweet potato by RT-PCR with the SPFMV specific primers and restriction analysis. Korean J. Plant Pathol. 11:396-397 |
9 | Kwak, H. R., Kim, M. K., Jung, M. N., Lee, S. H., Park, J. W., Kim, K. H. and Choi H. S. 2006. Virus diseases occurred on sweet potato in Korea. Plant Pathol. J. 22:239-247 과학기술학회마을 DOI ScienceOn |
10 | Park, W. M., Ryu, K. H., Kim, S. J. and Chin, M. S. 1994. Some properties of a potyvirus isolated from sweet potato in Korea. Korean J. Plant Pathol. 10:358-359 |
11 | Kim, Y. H., Kim, O. S., Roh, J. H., Moon, J. K., Sooo, S. I., Lee, S. C. and Lee, J. Y. 2004. Identification of Soybean mosaic virus strains by RT-PCRlRFLP analysis of cylindrical inclusion coding region. Plant Dis. 88:641-644 DOI ScienceOn |
12 | Moyer, J. W. and Salazar, L. E 1989. Viruses and virus-like diseases of sweet potato. Plant Dis. 73:451-455 DOI |
13 | IsHak, J. A., Kreuze, J. F., Johansson, A., Mukasa, S. B., Tairo, F., Abo EI-Abbas, F. M. and Valkonen, J. P. 2003. Some molecular characteristics of three viruses from SPVD-affected sweet potato plants in Egypt. Arch. Virol. 148:2449-2460 DOI |
14 | Karyeija, R. F., Gibson, R. W. and Valkonen, J. P. T. 1998. The significance of Sweet potato feathery mottle virus in subsistence sweet potato production in Africa Plant Dis. 82:4-15 DOI ScienceOn |
15 | Saitou, N. and Nei, M. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. BioI. Evol. 4:406-425 |
16 | Sakai, J., Mori, M., Morishita, T, Tanaka, M., Hanada, K., Usugi, T and Nishiguchi, M. 1997. Complete nucleotide sequence and genome organization of sweet potato feathery mottle virus (S strain) genomic RNA: the large coding region of the PI gene. Arch. Virol. 142: 1553-1562 DOI ScienceOn |
17 | Brunt, A. A., Crabtree, K., Dallwitz, M. J., Gibbs, A. J., Watson, L. and Zucher, E. J. 1996. Plant viruses online: Descriptions and lists from the VIDE database Version: 20th August 1996. URL http://biology.anu.edu.au/Groups/MES/vide/ |
18 | Colinet, D., Nguyen, M., Kummert, J., Lepoivre, P. and Xia, F. Z. 1998. Differentiation among potyviruses infecting sweetpotato based on genus- and virus-specific reverse transcription polymerase chain reaction. Plant Dis. 82:223-229 DOI ScienceOn |
19 | Rohlf, F. J. 1992. NTSYS-pc. Numerical taxonomy and multivariate analysis system (version 2.02). Exeter Software, Setauket, NY |
20 | Aritua, V., Adipala, E., Carey, B.B. and Gibson, R.W. 1998. The incidence of sweet potato virus disease and virus resistance of sweet potato grown in Uganda. Ann. Appl. Biol. 132:399-411 DOI ScienceOn |
21 | Souto, E. R., Sim, J., Chen, J., Valverde, R. A. and Clark, C. A. 2003. Properties of strains of Sweet potato feathery mottle virus and two newly recognized potyviruses infecting sweet potato in the United States. Plant Dis. 87:1226-1232 DOI ScienceOn |
22 | Nishiguchi, M., Mori, M., Suzuki, E, Nagata, R., Morishita, T., Sakai, J., Hanada, K. and Usugi, T. 1995. Specific detection of a severe strain of sweet potato feathery mottle virus (SPFMVS) by reverse transcription and polymerase chain reaction (RTPCR). Ann. Phytopathol. Soc. Japan 61:119-192 DOI ScienceOn |
23 | Cali, B, B, and Moyer, J. W. 1981. Purification, serology, and particle morphology, of two russet crack strains of sweet potato feathery mottle virus. Phytopathology 71:302-305 DOI |
24 | Gibbs, K. S. and Padovan, A. C. 1993. Detection of sweet potato feathery mottle in sweet potato grown in Northern Australia using an efficient and simple assay. Int. J. Pest Management 39:223-228 DOI |
25 | Abad, J. A., Conkling, M. A. and Moyer, J. W. 1992. Comparison of the capsid protein cistron from serologically distinct strains of sweet potato feathery mottle virus (SPFMV). Arch. Virol. 126:147-157 DOI |
26 | Choi, H. S., Ko, S. J., Kim, M. K., Park, J. W., Lee, S. H., Kim, K.H., Hassan, K. W., Choi, J. K. and Takanarni, Y. 2005. Characteristics of Potato virus Y isolated from paprika in Korea. Plant Pathol. J. 21:349-354 과학기술학회마을 DOI ScienceOn |
27 | Colinet, D., Kummert, J. and Lepoivre, P. 1994. The complete nucleotide sequences of the coat protein cistron and the 3' noncoding region of a newly-identified potyvirus infecting sweet potato, as compared to those of sweet potato feathery mottle virus. Arch. Virol. 139:327-336 DOI |
28 | Felsenstein J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783-791 DOI ScienceOn |
29 | Colinet, D., and Kummert, J. 1993. Identification of a sweet potato feathery mottle virus isolate from China (SPFMV-CH) by the polymerase chain reaction with degenerate primers. J. Virol. Methods 45:149-159 DOI ScienceOn |
30 | Craig G W., Stephen J. W. and Michael, G K. J. 2004. Diagnosis of plant viral pathogens. Current Sci. 86: 1604-1607 |
31 | Usugi, T, Nakano, M., Shinkai, A. and Hayashi, T 1991. Three filamentous viruses isolated from sweet potato in Japan. Ann. Phytopathol. Soc. Japan 57:12-521 |