• Weed & Turfgrass Science
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• v.3 no.3
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• pp.190-195
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• 2014

Echinochloa (L.) P. Beauv. includes some of the noxious weeds, causing a serious yield loss when they are dominant in the fields. Identification of the Echinochloa is very difficult because many interspecific and intraspecific forms of the species are found. However, it is important to identify the species exactly and to know the genetic diversity of the species for effective weed management. This study was conducted to identify and summarize the Echinochloa species by comparing the genetic variation and relationship among Korean Echinochloa species using SSR. The genetic diversity of 107 individuals, including seven species were assessed using five SSR markers. UPGMA dendrogram generated two clades (I and II) and clade II divided again into two subclades (II-1 and II-2) whereas the model based genetic structure proposed four subpopulations. The two subpopulations were corresponded to clades I and II-1 and the other two were arranged to clade II-2 of the UPGMA dendrogram. We have concluded that E. colona and E. glabrescens might have not distributed in Korea. The biological varieties, praticola and echinata, of E. crus-galli should be treated as E. crus-galli. Korean Echinochloa should be summarized with four species, i.e., E. oryzicola, E. crus-galli, E. esculenta, and E. oryzoides.

• Weed & Turfgrass Science
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• v.3 no.3
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• pp.183-189
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• 2014

The genus Echinochloa (L.) P. Beauv. comprised of approximately 30-40 species in the tropical and warm temperate regions of the world, including numerous interspecific and intraspecific types which make the genus difficult to identify. As an attempt to identify the species within the genus easier, the taxonomy of the genus Echinochloa, Poaceae in Korea was reviewed on the basis of sequencing data derived from nuclear ribosomal DNA internal transcribed spacer (ITS) and external transcribe spacer and chloroplast DNA trnL intron, trnL-F intergenic spacer and matK regions using a total of 46 accessions representing all the species in Korea. The results of maximum parsimony found separate lineage comprised of E. colona and E. frumentaceae which are not Korean species, but no resolution within Korean Echinochloa species, supporting the suggestion of Yamaguchi group that E. crus-galli, E. oryzoides, and E. esculenta should be considered to belong to the same species. However, the relationship between these three species and the other species, i.e. E. oryzicola should be better understood with more detail studies.

• Weed & Turfgrass Science
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• v.4 no.3
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• pp.225-229
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• 2015

Echinochloa colona is one of the most problematic weeds in the paddy fields of the world. In recent years, this species is likely to be introduced in Korea due to global warming, the expansion of international trade including agricultural products, and increasing tourists. We tried to identify the species from Korean Echinochloa crus-galli and E. oryzicola in order to establish the control measures in case of the initial influx. For this study, Echinochloa colona collected from the National Plant Germplasm System, USA were examined and E. crus-galli and E. oryzicola were collected in Korea. It is, however, very difficult to identify for Echinochloa species using morphological characters because of numerous interspecific and intraspecific types found in nature. Thus, we barcoded the species using rbcL, matK, and ITS. All three markers identified E. colona very well from the others. ITS alone may be enough as a DNA barcode for E. colona identification, when considering cost and effectiveness. The barcode sequences were deposited to the National Center for Biotechnology Information database for public use.

• Weed & Turfgrass Science
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• v.5 no.4
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• pp.181-186
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• 2016

Three Echinochloa species inhabit various crop fields with different soil moisture conditions. Therefore, a growthpouch test was conducted to investigate adaptive diversity of six Echinochloa species, three from Korea and three from USA, toosmotic stress by assessing shoot and root growths. Echinochloa crus-galli var. praticola showed the greatest tolerance to osmoticstress in both root ($GR_{50}=1316.3g\;PEG\;L^{-1}$) and shoot ($GR_{50}=212.2g\;PEG\;L^{-1}$) growths, while Korean E. oryzicola was mostsensitive to osmotic stress in both root ($GR_{50}=116g\;PEG\;L^{-1}$) and shoot ($GR_{50}=126.2g\;PEG\;L^{-1}$) growths. Root to shoot (R/S) ratioof Echinochloa crus-galli var. praticola increased with increasing osmotic stress, while that of Korean E. oryzicola decreased, suggestingthat R/S ratio is closely related to osmotic stress tolerance in Echinochloa species. Our results clearly demonstrate that E. crus-galli var.praticola maintains high R/S ratio even under high osmotic stress, which enables this species to well adapt to dry upland condition. Incontrast, while E. oryzicola fails to maintain sufficiently high R/S ratio, resulting in poor adaptability to dry upland condition.

• Korean Journal of Weed Science
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• v.18 no.1
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• pp.76-83
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• 1998

Echinochloa species maintained by selling for more than 10 years were classified using random amplified polymorphic DNAs(RAPDs) analysis. Seventy-four decamer of randomly sequence markers were used to classify intraspecific variation irt Echinochloa species. The number of amplification products increased with increasing GC content of the primer in the range between 60% and 70% GC. Single-base substitutions of a primer altered amplification, providing new polymorphisms. The size of amplified DNA was mostly between 0.40kbp and 1.4kbp with the most common bands at 1.1kbp. Echinochloa species were detected with 6 primers which generated 26 polymorphic amplified DNAs. By hierarchical cluster analysis, Echinochloa species collected in Korea were divided into three groups. These results revealed that RAPD markers are useful tools for the determination of genetic variations in Echinochloa species.

• Korean Journal of Plant Resources
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• v.26 no.4
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• pp.457-462
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• 2013

Molecular study were conducted to evaluate taxonomic identities of Echinochloa crus-galli (L.) Beauv. and Echinochloa crus-galli var. echinata (Willd.) Honda in Dokdo. Echinochloa crus-galli complex of two species 26 individuals analyse based on nuclear ribosomal DNA (ITS region) and cpDNA (trnH-psbA, trnL-F). At a result, two species were same sequence. Characters the length of the lemma and the length of the awn traits were identity of the species was unclear. According to, Taxonomy treatments that is based on existent morphological characters should thinks again. On the other hand, in the case of ITS, Echinochloa crus-galli (L.) Beauv. and Echinochloa crus-galli var. echinata (Willd.) Honda at the Dokdo forms from other clades with individuals that is collected at land area and Ulleungdo. These result is showing that is flowing independent evolution trends.

• Current Research on Agriculture and Life Sciences
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• v.8
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• pp.9-18
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• 1990

Germinating ability of 54 weed species collected throughout Korea in 1987 and 1988 was determined in incubator at $25^{\circ}C$ for 15 days. The seeds of Echinochloa sp, collected from 70 different places throughout Korea, were classified by Yabuno's seed morphology method. Plant characters of two identified Echinochloa species, one having two subspecies were evaluated. SDS-PAGE(sodium dodecyl sulfate polyacrylamide gel electrophoresis) of seed protein assay was used to identify locally collected Echinochloa species classified by Yabuno's seed morphology method. 1. Out of 54 weed species collected, 31 species showed germination at 15 days after incubation, and 14 species showed over 50% and no germination was observed in 24 species, indicating that approximately 40 species had varied degree of germinating ability. 2. It was confirmed that two annual species of Echinochloa such as E. oryzicola and E. crus-galli occurred in Korea and one of which particularly E. crus-galli has two subspecies such as E. c. var. praticola and E. c. var. crus-galli. 3. E. oryzicola was distinguished from E. c. var crus-galli and E. c. var praticola by presence or absence of one major protein band in B zone. However, it was rather difficult to distinguish E. crus-galli species because they showed similar protein pattern.

• KOREAN JOURNAL OF CROP SCIENCE
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• v.51 no.4
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• pp.362-368
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• 2006

A pot experiment was conducted to investigate the effects of soil burial depth on seedling emergences of rice (Oryza sativa) and Echinochloa spp. and to model such effects for mathematical prediction of seedling emergences. When the Gompertz curve was fitted at each soil depth, the parameter C decreased in a logistic form with increasing soil depth, while the parameter M increased in an exponential form and the parameter B appeared to be constant. The Gompertz curve was combined by incorporating the logistic model for the parameter C, the exponential model for the parameter M, and the constant for the parameter B. This combined model well described seedling emergence of rice and Echinochloa species as influenced by soil burial depth and predicted seedling emergence at a given time after sowing and a soil burial depth. Thus, the combined model can be used to simulate seedling emergence of crop sown in different soil depths and weeds present in various soil depths.

• Korean Journal of Weed Science
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• v.16 no.3
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• pp.194-199
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• 1996

Seed size and days required to reach specific growth stages were determined for Echinochloa crus-galli (L.) P. Beauv. varieties which are major grass species found in Korean paddy field and the results were compared with E. frumentacea (Roxb.) Link. In addition, responses of the Echinochloa species on preemergence herbicides (molinate, esprocarb, and mefenacet) were investigated with respect to time of application. One thousand seed weight of E. crus-galli var. oryzicola was about 3 times heavier than that of var. praticola, but was not significantly different that of E. frumentacea. Days requited to reach the 2.5 leaf-stage (LS) were 11, 13, and 14 days after seeding for E. frumentacea, E. crus-galli var. oryzicola, and E. crus-galli var. praticola, respectively. E. crus-galli var. praticola was more sensitive to molinate, esprocarb and mefenacet than var. oryzicola and the sensitivity of both the varieties decreased as the time of application LS was delayed. However, there was no great difference in the response for E. frumentacea when applied between 1.5 and 3.0 LS. In thiocarbamate hebicides esprocarb was more active to Echinochloa species than molinate and the higher the active ingredient of the herbicides, the greater was the activity to Echinochloa species. Differential susceptibility of Echinochloa species to the herbicides was not related to the seed size, but to the early growth stages at the time of herbicide application which were affected by the seed size.

• Journal of Plant Biotechnology
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• v.44 no.4
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• pp.472-477
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• 2017

Barnyardgrass (Echinochloa crus-galli) is one of the worst weeds in rice (Oryza sativa), but there are few reports about the genetic diversity and herbicide resistance of barnyardgrass in Vietnam. In this study, we used random amplified polymorphic DNA (RAPD) analysis and greenhouse testing to study the genetic diversity and quinclorac resistance levels of 15 Echinochloa crus-galli populations in the Mekong Delta, Vietnam, and the state of Arkansas, U.S. The quinclorac resistance of Echinochloa crus-galli populations in Vietnam was confirmed; 9 populations were resistant to quinclorac with R/S ratios ranging from 1.9 to 6.3. Six oligonucleotide primers produced a total of 55 repeatable bands of which 46 were polymorphic (83.3% average) among the 15 populations. Genetic distance was calculated, and cluster analysis separated the 15 populations into 2 main clusters with the genetic distances within the clusters ranging from 0.09 to 0.39. The two main clusters were divided into 7 subclusters, and the quinclorac resistant and susceptible populations were located randomly within each subcluster. Six out of 13 weed populations from Vietnam belonged to one cluster and a single Echinochloa species. The remaining 7 populations were identified as potentially different species in the Echinochloa genus. Nine Echinochloa populations from Vietnam were tested and identified as quinclorac resistant. The connection between quinclorac resistance levels and weed groups defined by RAPD analysis in the study is unclear; the quinclorac resistance of each resistant population could have evolved individually, regardless of differences in genetic diversity and location of the sampled populations.