• Title/Summary/Keyword: E. japonica

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Identification of QTLs for Some Agronomic Traits in Rice Using an Introgression Line from Oryza minuta

  • Rahman, Md Lutfor;Chu, Sang Ho;Choi, Min-Sun;Qiao, Yong Li;Jiang, Wenzhu;Piao, Rihua;Khanam, Sakina;Cho, Young-Il;Jeung, Ji-Ung;Jena, Kshirod K.;Koh, Hee-Jong
    • Molecules and Cells
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    • v.24 no.1
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    • pp.16-26
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    • 2007
  • Wild progenitor species provide potential gene sources for complex traits such as yield and multiple resistances to biotic and abiotic stresses, and thus are expected to contribute to sustainable food supplies. An introgression line 'IR71033-121-15' was derived from a wild species Oryza minuta (2n = 48, BBCC, Acc No. 101141) at IRRI. Introgression analysis using 530 SSR and STS markers revealed that at least 14 chromosomal segments distributed over 12 chromosomes had been introgressed from O. minuta. An $F_{2:3}$ population from the cross between IR71033 and Junambyeo (a Korean japonica cultivar) consisting of 146 lines was used for quantitative trait loci (QTL) analysis of 16 agronomic traits. A total of 36 single-locus QTLs (S-QTLs) and 45 digenic epistasis (E-QTLs) were identified. In spite of it's inferiority of O. minuta for most of the traits studied, its alleles contributed positively to 57% of the QTLs. The other QTLs originated from either parent, IR71033 or Junambyeo. QTLs for phenotypically correlated traits were mostly detected on introgressed segments. Fourteen QTLs corresponded to QTLs reported earlier, indicating that these QTLs are stable across genetic backgrounds. Twenty-two QTLs controlling yield and its components had not been detected in previous QTL studies. Of these, thirteen consisted of potentially novel alleles from O. minuta. QTLs from O. minuta introgression could be new sources of natural variation for the genetic improvement of rice.

Pattern and association within Pinus densiflora communities in Kyunggi Province, Korea (소나무 군집안의 주요 구성종의 미분포와 종간 상관)

  • 오계칠
    • Journal of Plant Biology
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    • v.13 no.1
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    • pp.33-46
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    • 1970
  • Pinus densiflora stands are common secondary forest communities on infertile soils in Korea. The stands are results of long severe past biotic pressure such as cutting, burning and grazing. These could be regarded as biotic climax in Korea. Because of their prevalent occurrence, relatively simple species and age composition, and their domestic economic importance, study of their distributional patterns may give some basic knowledge for better utilization of land resources in Korea. To detect distributional patterns and interspecific associations ten pine stands, each of which was homogenious with respect to topography and physiognomy, were subjectively selected from pine stands in Kyunggi Province near Seoul in 1969 and were made object of this study. Four contiguous systematic samples of count for trees, shrubs and seedlings from belt transects were collected from homogeneous areas within ten natural pine stands. The belt transect was 64m or 128m in length, and 1m, 2m or 4m in width. Basic units within the transect ranged from 64 to 256. The data from the contiguous transects were analysed in terms of multiple split-plot experiment. Departure from randomness of stem distribution, i.e., pattern, was tested in terms of variance mean ratio. For the detection of association between species, correlation coefficient was calculated for different block sizes. The values of ${\gamma}$ were tested by the usual t-test. Fine trees within one of the stands showed significant regular distribution through out the blocks. Within other eight stands pines were randomly distributed at basic unit with 4$\times$4m, 2$\times$2m, 2$\times$1m and 1$\times$1m. One significantly clumped distribution at basic unit 2$\times$2m, however, was observed from one of the pine stands. These randomly distributed groups were themselves significantly regularly distributed throughout the blocks for four pine stands. For the other four pine stands, in addition to the random distribution at the basie unit(the primary random group), randomly distributed groups with 32m dimension(the secondary random groups) were also observed. Both the primary and the secondary random groups were significantly regularly distributed at the rest of blocks. Pine seedlings were not distributed randomly thoughout the blocks. Within three of the ten stands they were contagiously distributed. Important shrub species underneath pines such as Querus serrata, Q. acutissima, Leapedeza intermedia, Rhododendron Yedoense var. poukhanenae, Juniperus utilis, Rhododendron mucronulatum var. ciliatum shnwed consistently similar distributional pattern with the pine at each stand. The shrub species pairs; Rhododendron Yedoense var. poukhanenae/Quercus serrata, Rhododendron mucronulatum var. ciliatum/Lespedeza intermedia were significantly negatively associated from 1m to 4m dimensional block sizes but became significantly positively associated from 8m sized blocks on. On the other hand the shrub species pairs; Lespedeza intermedia/Robinia Pseudoacacia, and Lespedeza bicolor var, japonica/Lespedeza intermedia were also significnalty negatively associated from 1m to 8m sized blocks but became significantly positively associated from 16m sized blocks on. The associational pattern between Rhododendron mucronul tun var. poukhanenae and Lespedeza intermedia was not consistent throughout the stands. In some stands negative associations were observed throughout the blocks except NS 32. From these observatons micro-edaphic variation within the pine stands seems not to be great enough to cause distributinal difference of pine trees within the ten pine stands. Among each species and pine seedings, however, the edaphic variation within the pine stands may be great enought to cause distributional variation.

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The Flora and Vegetation Distribution in Dokdo (독도(동도)의 식물상과 식생분포)

  • Kim, Myung-Hyun;Oh, Young-Ju;Kim, Chang-Seok;Han, Min-Su;Lee, Jeong-Taek;Na, Young-Eun
    • Korean Journal of Environmental Agriculture
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    • v.26 no.1
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    • pp.85-93
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    • 2007
  • This study aims to investigate the flora and the vegetation of Dokdo (Dongdo). The vegetation types were investigated by the Z-M school method. A total of 44 vascular plant taxa belonging to 24 families, 41 genera, 36 species, and 11 varieties are recognized in Dongdo, Dokdo. In this study, we confirmed four species, Chenopodium serotinum, Chelidonium majus var. asiaticum, Bromus japonicus, Elymus sibiricus, that had not been previously reported. The biological type of Dokdo was determined to be $Th-D_4-R_5-e(b)$ type. Two main vegetation groups which were established in a rocky area with little soil development and in a developed soil layer, along the development of soil layer have been distinguished and classified into five communities. The former was composed of 1 community; Aster spathulifolius-Sedum oryzifolium community. The latter was composed of 4 communities; Agropyron tsukusiense var. transiens community, Festuca rubra-Artemisia japonica ssp. littoricola community, Miscanthus sinensis community, and Artemisia princeps community.

Effects of Plant Extracts on Microbial Population, Methane Emission and Ruminal Fermentation Characteristics in In vitro

  • Kim, E.T.;Kim, C.H.;Min, K.S.;Lee, S.S.
    • Asian-Australasian Journal of Animal Sciences
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    • v.25 no.6
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    • pp.806-811
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    • 2012
  • This study was conducted to evaluate effects of plant extracts on methanogenesis and rumen microbial diversity in in vitro. Plant extracts (Artemisia princeps var. Orientalis; Wormwood, Allium sativum for. Pekinense; Garlic, Allium cepa; Onion, Zingiber officinale; Ginger, Citrus unshiu; Mandarin orange, Lonicera japonica; Honeysuckle) were obtained from the Plant Extract Bank at Korea Research Institute of Bioscience and Biotechnology. The rumen fluid was collected before morning feeding from a fistulated Holstein cow fed timothy and commercial concentrate (TDN; 73.5%, crude protein; 19%, crude fat; 3%, crude fiber; 12%, crude ash; 10%, Ca; 0.8%, P; 1.2%) in the ratio of 3 to 2. The 30 ml of mixture, comprising McDougall buffer and rumen liquor in the ratio of 4 to 1, was dispensed anaerobically into serum bottles containing 0.3 g of timothy substrate and plant extracts (1% of total volume, respectively) filled with $O_2$-free $N_2$ gas and capped with a rubber stopper. The serum bottles were held in a shaking incubator at $39^{\circ}C$ for 24 h. Total gas production in all plant extracts was higher (p<0.05) than that of the control, and total gas production of ginger extract was highest (p<0.05). The methane emission was highest (p<0.05) at control, but lowest (p<0.05) at garlic extract which was reduced to about 20% of methane emission (40.2 vs 32.5 ml/g DM). Other plant extracts also resulted in a decrease in methane emissions (wormwood; 8%, onion; 16%, ginger; 16.7%, mandarin orange; 12%, honeysuckle; 12.2%). Total VFAs concentration and pH were not influenced by the addition of plant extracts. Acetate to propionate ratios from garlic and ginger extracts addition samples were lower (p<0.05, 3.36 and 3.38 vs 3.53) than that of the control. Real-time PCR indicted that the ciliate-associated methanogen population in all added plant extracts decreased more than that of the control, while the fibrolytic bacteria population increased. In particular, the F. succinogens community in added wormwood, garlic, mandarin orange and honeysuckle extracts increased more than that of the others. The addition of onion extract increased R. albus diversity, while other extracts did not influence the R. albus community. The R. flavefaciens population in added wormwood and garlic extracts decreased, while other extracts increased its abundance compared to the control. In conclusion, the results indicated that the plant extracts used in the experiment could be promising feed additives to decrease methane gas emission from ruminant animals while improving ruminal fermentation.

Studies on the Structure of Plant Community and Visitor's Activities in Mt. Naejang Park (I) - Analysis of the Vegetational Structure by the Ordination Techniques - (내장산국립공원(內藏山國立公園)의 식물군집(植物群集) 및 이용행태(利用行態)에 관한 연구 (I) - Ordination 방법에 의한 식생구조분석(植生構造分析) -)

  • Lee, Kyong Jae;Oh, Koo Kyoon;Jo, Jae Chang
    • Journal of Korean Society of Forest Science
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    • v.77 no.2
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    • pp.166-177
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    • 1988
  • To investigate the structure of the plant community of the Naejang Temple District in Mt. Naejang National Park, 22 plots were set up by the vegetation physiognomy and vegetation analysis by four kinds of ordination techniques(PO, PCA, RA and DCA) was carried out. Pure and mixed forest community of Quercus variabilis and Q. mongolica were major forest communities and each of them covered 31.27 and 20.77%, respectively. The degree of human disturbance of vegetation 9, 8, 7 and 6 area covered 30.9, 67.0, 0 and 0.02%, respectively. According to stand dynamic analysis by DBH class distribution, the present Pinus densiflora and Quercus communities may be succeeded to Carpinus laxiflora communities. DCA was the most effective method of this study. DCA ordination showed that successional trends of tree species seem to be from P. densiflora through Q. variabilis, Q. aliena, Sorbus alnifolia, Platycarya strobilacea to Carpinus laxiflora, Fraxinus rhynchophylla, Zelkova serrata, Cornus controversa in the tree layer, and from Rhododendron mucronulatum, Rh. schlippenbachii, Lespedeza cyrtobotrya, Rhus trichocarpa through Styrax japonica, Daphniphyllum macropodum, Sapium japonicum to Euonymus oxyphyllum, E. sieboldiana, Lindera erythrocarpa in the subtree layer.

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Proximate and Fatty Acid Compositions of Three Species of Imported and Domestic Freshwater Fishes (수입산 및 국내산 담수어류 3종의 일반성분과 지방산 조성)

  • Moon, Soo-Kyung;Lee, Doo-Seog;Yoon, Ho-Dong;Kim, Yeon-Kye;Yoon, Na Young;Kim, In-Soo;Jeong, Bo-Young
    • Korean Journal of Fisheries and Aquatic Sciences
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    • v.45 no.6
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    • pp.612-618
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    • 2012
  • The proximate and fatty acid compositions of the edible portion of three species of cultured freshwater fish (common eel Anguilla japonica, rainbow trout Onchorhynchus mykiss, and Israeli carp Cyprinus carpio) were compared between imports from China and domestically produced specimens. The lipid contents of cultured common eel and rainbow trout were rich in imported fishes (20.4 and 12.2%, respectively) compared with those in domestic ones (16.0 and 8.01%, respectively), while those of Israeli carp were rich only in the domestically produced specimens (8.06 and 3.07%, respectively). There was a negative correlation between the lipid and moisture contents in all fish samples (r =-0.86). The protein contents ranged from 16.6 to 21.3% in domestic fishes and 15.3 to 19.1% in imported ones. The most prominent fatty acids in the fishes were: saturated fatty acids, 16:0, 18:0 and 14:0; monounsaturated fatty acids, 18:1n-9, 16:1n-7 and 18:1n-7; and polyunsaturated fatty acids (PUFA), 18:2n-6, 22:6n-3 (docosahexaenoic acid, DHA), and 20:5n-3 (eicosapentaenoic acid, EPA). The percentage of n-3 PUFA (e.g., DHA, 22:5n-3, EPA, and 18:3n-3) was higher in domestic common eel and Israeli carp than in imported ones, but similar in domestic and imported rainbow trout, and higher in domestic wild rainbow trout than in cultured ones. On the other hand, all of the cultured freshwater fishes contained a relatively large amount of 18:2n-6, which is a characteristic fatty acid in cultured fish lipids.

Occurrence of Weed Flora in Codonopsis lanceolata Upland Fields of Gangwon-Hoengseong and Jeju Areas in Korea (강원 횡성 및 제주지역 더덕밭 잡초발생양상)

  • Song, Hee Geun;Kim, Chang-Seok;Lee, Jeongran;Seo, Hyun-A;Choi, Kyung Mi;Lee, In-Yong
    • Weed & Turfgrass Science
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    • v.4 no.3
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    • pp.176-187
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    • 2015
  • The weed flora in the Codonopsis lanceolata upland fields were surveyed in Hoengseong and Jeju in May, August, and October of 2014. The objectives of this study were to use the survey data for establishing weed control methods and to bring awareness of possible problematic weeds occurred in C. lanceolata upland fields in Korea. Altogether 207 weed species of 47 families were identified, of which 87 were annual, 47 species were biennial and 73 were perennial. Based on the morphological characteristic of the leaves, 182 species were broad leaves, 18 species were grasses, and 7 species were sedges. The dominance was highest in the Artemisia princeps followed by Digitaria ciliaris, Commelina communis, Persicaria longiseta and Echinochloa crus-galli etc. Fifty-nine species were exotic weeds with 29% of a total presence, of which Erigeron annuus was highest, followed by Crassocephalum crepidioides, Bidens frondosa, Hypochaeris radicata etc. In the PCA plot, weeds presented in the C. lanceolata upland fields of Hoengseong were divided into three groups, E. annuus, Sigesbeckia pubescence and C. communis communities and those of Jeju were divided into four groups, C. crepidioides-Cyperus iria, Spergula arvensis, Poa annua and Youngia japonica communities.

Growing features and Vegetation at natural growth area of ristics of Acanthopanax chiisanensis and Acanthopanax koreanum (지리산오갈피와 섬오갈피의 생육특성 및 자생지 식생조사)

  • 임병선;이점숙;김하송
    • Korean Journal of Plant Resources
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    • v.12 no.2
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    • pp.125-132
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    • 1999
  • This study has investigated the growing features and vegetation of Acanthopanax chiisanensis and Acanthopanax koreanum in Mt. Jiri and Halla from Sep. 1997 to Aug. 1998. As to Acanthopanax chiisanensis, it occupied surrounding areas of Nogodan in Mt. Jiri of the height of 1,507m, ImgeolyoungJae of 1,300m and the Mt. Halla. of 1,100m of There were rather high constancy degree with Quercus mongolica, Schizandra chinensis, Hydrangen serrate for. acuminata, Acer pseudo-sieboldianum, Dryopteris crassirhizoma, Actaea asiatica, Thalictrum filamentosum, Abies koreana, Arundinella hirta from the sorts. The common species in Mt. Jiri and Halla are Acer pseudo-sieboldianum, Dryopteris crassirhizoma, Callicarpa japonica, Parthenocissus tricuspidata, Acer mono, Ligularia fischeri, Disporum smilacinum, Viola acuminata Aconitum kusnezofii. On the other hand, concerning of Acanthopanax koreanum community, it possessed the small areas of wedo weoltae village in Chejudo. In this area, a liana e.g. Dioscorea tenuipes, Hedera rhombea, Lygodium japonicum, Akebia quinata, Vitis thunbergii, Dunbaria villosa, Trachelospermum asiaticum var. intermedium, Vitis amurensis, Paederia scandens, lives with Pinux thunbergii, Celtis aurantiaca, Mallotus japonicus and so forth in tree layer and subtree layer. There is artificial change no move in the researching sites, Acanthopanax chiixanensis will be transformed into Abies koreana - Acanthopanax chiisanensis community. Soil characteristics showed the high value such as pH 6.56 and conductivity 0.258mmho/cm in Acanthopanax koreanum community of Mt. Jiri, they also indicated digit as follows: the content of organic matter and total nitrogen are from 25.16 through 25.35% and 7.58 through 9.30mg/g respectably. The soil characteristics at Acanthopanax chiisanensis community in Mt. Jiri and Halla, was high as like pH 5.76, conductivity 0.238mmho/cm, total nitrogen 9.30mg/g, total phosphorus 0.126mg/g in Mt. Halla.

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In vitro Inhibitory Activity on Rat Intestinal Mucosa ${\alpha}-glucosidase$ by Rice Hull Extract (왕겨추출물의 쥐소장점막 ${\alpha}-glucosidase$에 대한 in vitro에서의 저해효과)

  • Kim, Hye-Young
    • Korean Journal of Food Science and Technology
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    • v.29 no.3
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    • pp.601-608
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    • 1997
  • In order to search for the way to utilize rice hull as a renewable resource, the inhibition on ${\alpha}-glucosidase$ and the fractionation of rice hull extract was investigated. An ethanol extract of rice hull from Japonica-type rice seeds exhibited 30% inhibitory activity on rat intestinal brush border ${\alpha}-glucosidase$ (1.4 mU/mL) in vitro at the concentration of 0.8 mg/mL using 6 mM p-nitrophenyl ${\alpha}-D-glucopyranoside$ as a substrate $(IC_{50}\;162\;mg/mL)$. Among the fractions obtained by partitioning the ethanol extract successively with solvents, the ethyl acetate fraction at the concentration of 0.8 mg/mL was found to exhibit the most potent inhibitory activity i.e. 65% inhibition of ${\alpha}-glucosidase\;(IC_{50}\;0.14\;mg/mL)$. Silica gel column chromatography of the ethyl acetate fraction exhibited slightly higher (90%) inhibitory activity, and its subsequent fractionation by Sephadex LH-20 column chromatography did not improve inhibitory activity. Considering the inhibitory activity and yield, the ethyl acetate fraction obtained by the solvent-partitioning process would be a candidate for the hypoglycemic food if it has in vivo effectiveness.

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Disease Resistance against Bacterial Infection on Treatment of Hot-water Extract with 6 Herbal Mixtures in Olive Flounder Paralichthys olivaceus (복합 생약재 열수추출물 투여에 따른 넙치 세균성 질병에 대한 질병저항성)

  • SEO, Jung Soo;JEON, Eun Ji;KWON, Mun Gyeong;HWANG, Jee Youn;JUNG, Sung Hee;KIM, Na Young;JEE, Bo Young;PARK, Myoung Ae
    • Journal of Fisheries and Marine Sciences Education
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    • v.28 no.6
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    • pp.1715-1723
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    • 2016
  • The heat extracts of six kinds of medicinal herbs (Scutellaria baicalensis, Sophora flavescens, Citrus unshiu pericarpium, Lonicera japonica, Perilla frutescens, Benincasa hispida) were tested for non-specific immune response and disease resistance effects related with fish diseases on olive flounder, Paralichthys olivaceus. The preventive effects of 6 herbal mixtures against bacterial disease on cultured flounder were examined follow as feeding EP absorbed with the heat extract of six kinds of medicinal herbs. For feeding trial for 12th week, weight gain and serum analysis of fish fed various groups were not significant differences. Lysozyme activity of the 0.01 % treated group on 4th week showed significant increase. Histopathology of the administrated group for feeding period showed no particular signs of tissue degeneration. At 0.01% oral experimental group, relative percent survival (RPS) were only 50% to 75% for four weeks and eight weeks group by intraperitoneal injection with E. tarda. The results suggest that heat extracts of six kinds of medicinal herbs (0.01%) would be effective to enhance the nonspecific immunity and protective ability of olive flounder against fish pathogen.