• 제목/요약/키워드: Differential display analysis

검색결과 102건 처리시간 0.027초

Synthesis and Characterization of Novel Fused Aromatic Semiconductors

  • Zhao, Qinghua;Park, Jong-Won;Kim, Yun-Hi;Kwon, Soon-Ki
    • 한국정보디스플레이학회:학술대회논문집
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    • 한국정보디스플레이학회 2006년도 6th International Meeting on Information Display
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    • pp.1193-1197
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    • 2006
  • The novel oligomers were synthesized by Grignard reaction, the suzuki coupling reaction, etc. The oligomers were characterized by Infrared (IR), Mass spectrometer (MS). Their thermal properties were investigated by differential scanning calorimetry (DSC) and Thermogravimetric analysis (TGA). The new oligomers showed high thermal stability above $300^{\circ}C$.

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원영상의 기울기 성형을 이용한 경계강조 오차확산법 (Edge Enhanced Error Diffusion based on Gradient Shaping of Original image)

  • 강태하;황병원
    • 대한전자공학회:학술대회논문집
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    • 대한전자공학회 2000년도 하계종합학술대회 논문집(4)
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    • pp.70-73
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    • 2000
  • The error diffusion is good for reproducing continuous image to binary image. However the reproduction of edge characteristics is weak in power spectrum analysis of display error. It is suggested for us an edge-enhanced error-diffusion method that is included pre-processing algorithm for edge characteristic enhancement. Pre-processing algorithm is organized horizontal and vertical directional 2nd order differential values and weighting function of pre-filter. The improved Error diffusion using pre-filter, presents a good results visually which edge characteristics is enhanced. The performance of the proposed algorithm is compared with that of the conventional edge-enhanced error diffusion by measuring the RAPSD of display error, the egde correlation and the local average accordance.

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Savitzky-Golay 필터와 미분을 활용한 LSTM 기반 지하수 수위 예측 모델의 성능 비교 (Performance Comparison of LSTM-Based Groundwater Level Prediction Model Using Savitzky-Golay Filter and Differential Method )

  • 송근산;송영진
    • 반도체디스플레이기술학회지
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    • 제22권3호
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    • pp.84-89
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    • 2023
  • In water resource management, data prediction is performed using artificial intelligence, and companies, governments, and institutions continue to attempt to efficiently manage resources through this. LSTM is a model specialized for processing time series data, which can identify data patterns that change over time and has been attempted to predict groundwater level data. However, groundwater level data can cause sen-sor errors, missing values, or outliers, and these problems can degrade the performance of the LSTM model, and there is a need to improve data quality by processing them in the pretreatment stage. Therefore, in pre-dicting groundwater data, we will compare the LSTM model with the MSE and the model after normaliza-tion through distribution, and discuss the important process of analysis and data preprocessing according to the comparison results and changes in the results.

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Identification of a Novel PGE2 Regulated Gene in SNU1 Gastric Cancer Cell

  • Park, Min-Seon;Kim, Hong-Tae;Min, Byung-Re;Kimm, Ku-Chan;Nam, Myeong-Jin
    • BMB Reports
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    • 제33권2호
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    • pp.184-187
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    • 2000
  • Prostaglandin $E_2$ ($PGE_2$) plays an important role in the regulation of various gastric functions, and the growth-inhibitory activities on tumor cells are studied in vitro and in vivo. Although the mechanisms have attracted many researchers in the past decade, the molecular mechanisms of cell cycle arrest, or induction of apoptosis by $PGE_2$, is unclear. We investigated the effects of $PGE_2$ on the growth of the human gastric carcinoma cell line SNU1 and genes that are regulated by $PGE_2$ and isolated them using differential display RT-PCR (DD RT-PCR). FACS analysis suggested that SNU1 cells were arrested at the G1 phase by $PGE_2$ treatment. This growth inhibitory effect was in a time- and dose-dependent manner. Treatment of SNU1 cells with $10\;{\mu}g/ml$ $PGE_2$, followed by DD RT-PCR analysis, revealed differently expressed bands patterns from the control. Among the differently expressed clones, we found an unidentified cDNA clone (HGP-27) overexpressed in $PGE_2$-treated cells. The full-length cDNA of HGP-27 was isolated using RACE, which consisted of a 30-nt 5'-noncoding region, a 891-nt ORF encoding the 296 amino acid protein, and a 738-nt 3'-noncoding region including a poly(a) signal. This gene was localized on the short arm of chromosome number 11. Using the Motif Finder program, a myb-DNA binding repeat signature was detected on the ORF region. The COOH-terminal half was shown to have similarity with the $NH_3$-terminal domain of thioredoxin (Trx). This relation between HGP-27 and Trx implied a potential role for HGP-27 in modulating the DNA binding function of a transcription factor, myb.

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Identification of Differentially Expressed Genes in Nickel[li]-Treated Normal Rat Kidney Cells

  • Koh, Jae-Ki;Lee, Sang-Han
    • 한국환경성돌연변이발암원학회지
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    • 제24권2호
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    • pp.85-90
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    • 2004
  • Nickel(II) compounds are carcinogenic metals which induce genotoxicity and oxidative stress through the generation of reactive oxygen species. In search of new molecular pathways toward understanding the molecular mechanism of nickel(II)-induced carcinogensis, we performed mRNA differential display analysis using total RNA extracted from nickel(II) acetate-treated normal rat kidney cells (NRK-52E). Cells were exposed for 3 days to 160 and 240 uM nickel(II) concentrations. cDNAs corresponding to mRNAs for which expression levels were altered by nickel(II) were isolated, sequenced, and followed by a GenBank Blast homology search. Specificity of differential expression of cDNAs was determined by RT-PCR and Western blot analysis. Two of them (SH3BGRL3 and FHIT) were down-regulated and one (metallothionein) was up-regulated by nickel(II) treatment. The expression of these mRNAs were nickel(II) concentration-dependent. The levels of FHIT and metallothionein proteins were also consistent with the results for mRNAs. Overall, although the fundamental questions related to function of these genes in nickel(II)-mediated carcinogenicity are not answered, our study suggests that they can be interesting candidates for studies of molecular mechanisms of nickel(II) carcinogenesis.

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Organic Thin-Film Transistors based on Alkoxynaphthalene End-capped Divinylbenzene

  • Kim, Yun-Hi;Lee, Dong-Hee;Park, Sung-Jin;Chen, June;Yi, Mi-Hye;Kwon, Soon-Ki
    • Journal of Information Display
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    • 제10권3호
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    • pp.125-130
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    • 2009
  • The new organic semiconductor, which is composed of a divinylbenzene core unit and alkoxynaphthalene on both sides, 1,4-bis-2-(6-hexyloxy)naphthalen-2-yl-vinylbenzene, was synthesized via Wittig reaction. The obtained oligomer was characterized via FT-IR, mass and elemental analysis, UV-visible spectroscopy, cyclovoltammetry, differential scanning calorimetry (DSC), and thermogravimetric analysis (TGA). The vacuum-evaporated film was characterized via X-ray diffraction and atomicforce microscopy (AFM). It formed a highly ordered polycrystalline vacuum-evaporated film and exhibited a good field-effect performance, with a hole mobility of $0.015cm^2/V{\cdot}s$, an on/off ratio of $1.18{\times}10^5$, and a subthreshold slope of 0.69 V when it was deposited at Ts=$90^{\circ}C$ on HMDS-treated $SiO_2$.

퉁퉁마디로부터 염에 의하여 유도되는 Aldolase 유전자의 분리 및 발현분석 (Molecular Cloning and Characterization of Salt-inducible Aldolase from Salicornia herbacea)

  • 차준영;네티엘마와티;김순길;이증주;임채오;정우식;이곤호;손대영
    • Journal of Plant Biotechnology
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    • 제30권4호
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    • pp.323-328
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    • 2003
  • 토양 내의 고농도의 염은 심각한 환경스트레스 중의 하나로 농작물의 생산을 감소시킨다. 식물은 염 스트레스로부터 벗어나기 위하여 많은 단백질을 합성한다든지 유전자들의 발현을 조절하는 등 여러 가지 생리, 생화학적인 변화를 일으킨다. 퉁퉁마디는 우리나라에 자생하는 염생식물로 갯벌과 염전주위에서 생육한다. 퉁퉁마디의 생화학적, 분자생물학적 내염성 기구를 이해하기 위하여 differential display방법으로 NaCl에 의하여 발현이 증가되는 cDNA들을 분리하였다. 본 연구에서는 그 중 하나인 ShADL의 특성을 조사하였다. ShADL은fructose-1, 6-bisphosphate aldolase와 높은 유사성을 보였다. 이 유전자는 1293bp길이에 359개의 아미노산으로 구성된 open reading frame을 포함하고 있으며, 이로부터 추정되는 분자량은 39 kDa이었다. ShADL단백질은 애기장대의 aldolase와 86%의 높은 유사성을 나타내었으며 같은 염생식물인 com-mon ice plant의 adolase와는 78%의 유사성을 보였다. Northern 분석결과, ShADL 유전자는 NaCl의 농도가 증가함에 따라 발현량이 급격히 증가하는 것으로 나타났다.

Differential Display PCR을 이용한 사과 자가적과성 연관 유전자 탐색 (Identifying Genes Related with Self-thinning Characteristics in Apple by Differential Display PCR)

  • 김세희;허성;신일섭;김정희;조강희;김대현;황정환
    • 한국육종학회지
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    • 제42권5호
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    • pp.565-573
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    • 2010
  • 사과의 경우 한 과총에 5개의 꽃이 피는데 그 중 한 가운데의 중심화가 먼저 개화하여 과일로 발달하고 주위의 측과 4개는 스스로 낙과되는 현상을 자가적과성이라고 한다. 적과는 인위적으로 과실의 숫자를 줄여 잎 수와 과실 수의 균형을 맞추는 작업으로 과실의 크기를 증가시키고, 수세, 수형을 유지시켜 안정적인 생산에 도움을 준다. 노동력 절감을 위해 인간에게 유용하게 사용될 수 있는 특성이 자가적과성인데, 자가적과성 품종의 사과에서 측과는 만개 후 30일 이내에 떨어지고 중심과만 남아서 성숙하게 된다. 51개의 사과 품종으로부터 비자가적과성 그룹 20종, 6월 생리적 낙과 그룹 16종, 자가적과성 그룹 15종을 분류하였다. 대표적인 자가적과성 품종인 Aori #9 로부터 중심과와 측과에서 다르게 발현이 되는 유전자들을 DD-PCR 방법으로 확인하였다. 중심과에서 30개의 clones 과 측과에서 24개의 clones을 선발하여 염기서열을 분석하였다. 주로 측과에서 발현되는 유전자들은 pathogenesis, senescence, temperature stress, protein degradation, fruit browning, sorbitol metabolism에 관여하는 유전자들과 높은 상동성을 나타내고, 중심과에서 발현되는 유전자들의 염기서열을 분석해 보면 anthocyanin의 up-regulation이나 flavonol 생합성, ethylene 생합성에 관여하는 유전자들이 분포한다. Cytochrome P450 유전자의 발현양상을 보기 위해 Real time PCR 분석을 한 결과 중심과보다 측과에서 발현량이 높게 나타났다. 중심과와 측과에서 다르게 발현되는 유전자들의 실제 발현양상을 분석하기 위해 Real time PCR을 이용해서 상대정량을 분석할 계획이며 분자수준에서의 자가적과를 조절하는 기작에 대한 앞으로의 연구는 생력 재배가 가능한 품종 육성의 육종 소재 개발에 활용될 수 있을 것이다.

A novel WD40 protein, BnSWD1, is involved in salt stress in Brassica napus

  • Lee, Sang-Hun;Lee, Jun-Hee;Paek, Kyung-Hee;Kwon, Suk-Yoon;Cho, Hye-Sun;Kim, Shin-Je;Park, Jeong-Mee
    • Plant Biotechnology Reports
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    • 제4권2호
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    • pp.165-172
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    • 2010
  • Genes that are expressed early in specific response to high salinity conditions were isolated from rapeseed plant (Brassica napus L.) using an mRNA differential display method. Five PCR fragments (DD1.5) were isolated that were induced by, but showed different response kinetics to, 200 mM NaCl. Nucleotide sequence analysis and homology search revealed that the deduced amino sequences of three of the five cDNA fragments showed considerable similarity to those of ${\beta}$-mannosidase (DD1), tomato Pti-6 proteins (DD5), and the tobacco harpin-induced protein hin1 (DD4), respectively. In contrast, the remaining clones, DD3 and DD2, did not correspond to any substantial existing annotation. Using the DD3 fragment as a probe, we isolated a full-length cDNA clone from the cDNA library, which we termed BnSWD1 (Brassica napus salt responsive WD40 1). The predicted amino-acid sequence of BnSWD1 contains eight WD40 repeats and is conserved in all eukaryotes. Notably, the BnSWD1 gene is expressed at high levels under salt-stress conditions. Furthermore, we found that BnSWD1 was upregulated after treatment with abscisic acid, salicylic acid, and methyl jasmonate. Our study suggests that BnSWD1, which is a novel WD40 repeat-containing protein, has a function in salt-stress responses in plants, possibly via abscisic acid-dependent and/or -independent signaling pathways.

결핵균 감염에 의한 THP-1 세포에서의 Prothymosin alpha 유전자 발현증가 (Up-regulation of Prothymosin alpha in THP-1 Cells Infected with Mycobacterium tuberculosis)

  • 송호연;장광식;변희선;이신제;김진구;최용경;고광균
    • 대한미생물학회지
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    • 제35권2호
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    • pp.149-157
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    • 2000
  • Mycobacterium tuberculosis is capable of growing and survival within macrophage. The purpose of this study was to identify the genes regulated by infection of mycobacteria in human monocytic THP-1 cells. We used the differential display reverse transcriptase polymerase chain reaction (DD RT-PCR) and nothern blot analysis to confirm the differentially expressed genes from THP-1 cells infected with live Mycobacterium tuberculosis H37Rv, heat-killed Mycobacterium tuberculosis H37Rv and live Mycobacterium bovis BCG. Among many up or down-regulated clones, 27 clones were sequenced and compared with known genes on GenBank. Thirteen of over-expressed clones from THP-1 cells infected with live Mycobacterium tuberculosis H37Rv were identical to human prothymosin alpha, eight were novel clones and six clones showed homology with Human ferritin H chain, Esherichia coli bgl, Mouse RNA-dependent EIF-2 alpha kinase, E. coli htrL, Hyaluronan receptor and T cell receptor. Our result suggests that Mycobacterium tuberculosis might regulate prothymosin alpha gene transcription in monocytic THP-1 cell.

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