• 제목/요약/키워드: Deletion

검색결과 1,562건 처리시간 0.09초

Paenibacillus polymyxa Cycloinulooligosaccharide Fructanotransferase의 효소 활성에 미치는 각 Domain의 역할 (Domain Function and Relevant Enzyme Activity of Cycloinulooligosaccharide Fructanotransferase from Paenibacillus polymyxa)

  • 유동주;박정하;유경옥;남수완;김광현;김병우;권현주
    • 한국미생물·생명공학회지
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    • 제34권3호
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    • pp.278-287
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    • 2006
  • 토양으로부터 분리한 P. polymyxa 균주가 생산하는 CFTase의 각 repeat region의 결손 변이체를 제작하였으며 그에 따른 야생형 효소와 변이 효소의 활성변화 및 효소특성을 비교 검토하였다. 야생형 CFTase를 CFT148로, N-말단의 R1과 R3를 제거한 결손변이체 CFTase를 CFT108로, C-말단의 R4를 제거한 결손변이체는 CFT130, 모든 R 영역을 제거한 것은 CFT88로 명명하였다. 각각 정제된 재조합 단백질은 148 kDa, 108 kDa, 130 kDa, 그리고 88 kDa의 크기를 나타내었다. Inulin을 기질로 각 재조합 단백질의 활성을 검토한 결과 CFT108은 CF생성, CF분해 반응을 모두 가지고 있었으며 CFT130, CFT88의 경우에는 CF생성 활성을 나타내지 않았으며 endo-inulinae와 동일한 inulin 분해활성을 나타내었다. 따라서 N-말단의 repeat region인 R1과, R3의 역할은 균체 외로의 분비를 담당하며 C-말단의 R4영역은 CFTase의 중요 활성인 cyclization반응을 담당하고 있는 것으로 확인되었다. Repeat region의 모두 제거한 결손 변이체는 기질 inulin을 F2-F4 사이의 중합도를 가진fructooligosaccharide를 생산하는 endo-inulinase의 활성을 가지고 있었다. CFTase는 다기능 효소로 여러 domain으로 구성되어 있으며 각 domain의 결손에도 단백질의 활성을 유지하였으며, 특히 결손 변이체 CFT108은 고효율의 CF 생산이 가능하여 산업적으로 유용하게 사용될 수 있는 효소이다.

Myeloid-specific SIRT1 Deletion Aggravates Hepatic Inflammation and Steatosis in High-fat Diet-fed Mice

  • Kim, Kyung Eun;Kim, Hwajin;Heo, Rok Won;Shi, Hyun Joo;Yi, Chin-ok;Lee, Dong Hoon;Kim, Hyun Joon;Kang, Sang Soo;Cho, Gyeong Jae;Choi, Wan Sung;Roh, Gu Seob
    • The Korean Journal of Physiology and Pharmacology
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    • 제19권5호
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    • pp.451-460
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    • 2015
  • Sirtuin 1 (SIRT1) is a mammalian $NAD^+$-dependent protein deacetylase that regulates cellular metabolism and inflammatory response. The organ-specific deletion of SIRT1 induces local inflammation and insulin resistance in dietary and genetic obesity. Macrophage-mediated inflammation contributes to insulin resistance and metabolic syndrome, however, the macrophage-specific SIRT1 function in the context of obesity is largely unknown. C57/BL6 wild type (WT) or myeloid-specific SIRT1 knockout (KO) mice were fed a high-fat diet (HFD) or normal diet (ND) for 12 weeks. Metabolic parameters and markers of hepatic steatosis and inflammation in liver were compared in WT and KO mice. SIRT1 deletion enhanced HFD-induced changes on body and liver weight gain, and increased glucose and insulin resistance. In liver, SIRT1 deletion increased the acetylation, and enhanced HFD-induced nuclear translocation of nuclear factor kappa B (NF-${\kappa}B$), hepatic inflammation and macrophage infiltration. HFD-fed KO mice showed severe hepatic steatosis by activating lipogenic pathway through sterol regulatory element-binding protein 1 (SREBP-1), and hepatic fibrogenesis, as indicated by induction of connective tissue growth factor (CTGF), alpha-smooth muscle actin (${\alpha}$-SMA), and collagen secretion. Myeloid-specific deletion of SIRT1 stimulates obesity-induced inflammation and increases the risk of hepatic fibrosis. Targeted induction of macrophage SIRT1 may be a good therapy for alleviating inflammation-associated metabolic syndrome.

Regulation of amyloid precursor protein processing by its KFERQ motif

  • Park, Ji-Seon;Kim, Dong-Hou;Yoon, Seung-Yong
    • BMB Reports
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    • 제49권6호
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    • pp.337-343
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    • 2016
  • Understanding of trafficking, processing, and degradation mechanisms of amyloid precursor protein (APP) is important because APP can be processed to produce β-amyloid (Aβ), a key pathogenic molecule in Alzheimer's disease (AD). Here, we found that APP contains KFERQ motif at its C-terminus, a consensus sequence for chaperone-mediated autophagy (CMA) or microautophagy which are another types of autophagy for degradation of pathogenic molecules in neurodegenerative diseases. Deletion of KFERQ in APP increased C-terminal fragments (CTFs) and secreted N-terminal fragments of APP and kept it away from lysosomes. KFERQ deletion did not abolish the interaction of APP or its cleaved products with heat shock cognate protein 70 (Hsc70), a protein necessary for CMA or microautophagy. These findings suggest that KFERQ motif is important for normal processing and degradation of APP to preclude the accumulation of APP-CTFs although it may not be important for CMA or microautophagy.

Lack of Participation of the GSTM1 Polymorphism in Cervical Cancer Development in Northeast Thailand

  • Natphopsuk, Sitakan;Settheetham-Ishida, Wannapa;Settheetham, Dariwan;Ishida, Takafumi
    • Asian Pacific Journal of Cancer Prevention
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    • 제16권5호
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    • pp.1935-1937
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    • 2015
  • The potential association between the GSTM1 deletion polymorphism and risk of cervical cancer was investigated in Northeastern Thailand. DNA was extracted from buffy coat specimens of 198 patients with squamous cell carcinoma of the cervix and 198 age-matched healthy controls. Genotyping of the GSTM1 was conducted by using two PCR methods, a short- and a long-PCR. Distribution of the GSTM1 genotypes in between the cases and the controls was not significantly different (p>0.5 by ${\chi}^2$ test). The results suggest that the GSTM1 deletion polymorphism is not a risk factor for squamous cell carcinoma of the cervix in the northeast Thai women.

Minimum Weight Design for Bridge Girder using Approximation based Optimization Method

  • 김종옥
    • 한국농공학회지
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    • 제37권E호
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    • pp.31-39
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    • 1995
  • Weight minimization for the steel bridge girders using an approximation based optimization technique is presented. To accomplish this, an optimization oriented finite element program is used to achieve continuous weight reduction until the optimum is reached. To reduce computational cost, approximation techniques are adopted during the optimization process. Constraint deletion as well as intermediate design variables and responses are also used for higher qualitv of approximations and for a better convergence rate. Both the reliability and the effectiveness of the underlying optimization method are reviewed.

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Hyphal Growth Inhibition by Deer Antler Extract Mimics the Effect of Chitin Synthase Deletion in Candida albicans

  • Park, Hyun-Sook;Jhon, Gil-Ja;Choi, Won-Ja
    • Journal of Microbiology and Biotechnology
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    • 제8권4호
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    • pp.422-425
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    • 1998
  • Chitin synthase null-mutants propagate in yeast form in RPMI medium with suppression of hyphal growth. This hyphal suppression is also observed in the wild type culture grown in RPMI medium supplemented with deer antler extract. To identify the possible target of deer antler extract, the enzymatic activities of chitin synthases were examined. The enzymatic activities of three chitin synthases, CAChsl, CAChs2, and CAChs3, were found to be differentially inhibited by deer antler extract. Of them, CAChsl, was the most sensitive to the extract. These results indicate that deer antler extract causes hyphal suppression, which resembles the effects of chitin synthase deletion, probably through direct inhibition of chitin synthases.

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상수 삽입 전이 시간을 가지는 양단 우선순위 큐 (A Double-Ended Priority Queue with O(1) Insertion Amortized Time)

  • 정해재
    • 정보처리학회논문지A
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    • 제16A권3호
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    • pp.217-222
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    • 2009
  • 우선순위 큐는 스케줄링, 정렬, 유전자 검색과 같은 우선순위에 따른 검색, 최단거리 계산과 같은 응용에 사용될 수 있다. 본 논문에서 제안하는 배열을 이용한 양단 우선순위 큐 자료구조는 삽입과 삭제 연산에 각각 O(1) 전이시간과 O(logn) 시간이 걸린다. 본 저자가 알고 있는 한, 지금까지의 배열을 이용한 양단우선순위 큐 알고리즘은 삽입과 삭제에 모두 O(logn) 시간이 걸린다.