• Title/Summary/Keyword: Data format conversion

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A Simple GUI-based Sequencing Format Conversion Tool for the Three NGS Platforms

  • Rhie, A-Rang;Yang, San-Duk;Lee, Kyung-Eun;Thong, Chin Ting;Park, Hyun-Seok
    • Genomics & Informatics
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    • v.8 no.2
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    • pp.97-99
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    • 2010
  • To allow for a quick conversion of the proprietary sequence data from various sequencing platforms, sequence format conversion toolkits are required that can be easily integrated into workflow systems. In this respect, a format conversion tool, as well as quality conversion tool would be the minimum requirements to integrate reads from different platforms. We have developed the Pyrus NGS Sequencing Format Converter, a simple software toolkit which allows to convert three kinds of Next Generation Sequencing reads, into commonly used fasta or fastq formats. The converter modules are all implemented, uniformly, in Java GUI modules that can be integrated in software applications for displaying the data content in the same format.

The Method of Effective DB Conversion and Related System Development for the Integrated KORMARC Format - Based on the Case of Sogang University Library - (통합서지형 KORMARC의 도입을 위한 효과적인 DB 변환과 시스템 구축 방안 - 서강대학교 도서관의 '자체 변환 방식'을 중심으로 -)

  • Lee, Kyu-Youn
    • Journal of Korean Library and Information Science Society
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    • v.45 no.3
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    • pp.93-117
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    • 2014
  • The goal of this study is to seek for the method of effective DB conversion and related system development for the integrated KORMARC Format on the basis of the case of Sogang University Library. Since the integrated KORMARC bibliographic format was established, libraries have been converting bibliographic DB according to the new format. Loyola Library of Sogang University internally proceeded DB conversion using bibliographic DB convertor, which was developed and customized with a system vendor for Sogang University Library. The internal conversion enabled to correct or supplement bibliographic data errors. Besides, it enhanced stability of conversion and shortened the project time by adopting sampling conversion method. It was effective to reduce the additional work for DB quality maintenance, so this kind of conversion is recommendable to the library that has limited manpower for manual data correction.

A Study on Rapid Prototyping using VRML Model (VRML 모델을 이용한 쾌속조형에 관한 연구)

  • 김호찬;이주호;반갑수;최홍태;이석희
    • Journal of the Korean Society for Precision Engineering
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    • v.17 no.7
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    • pp.63-73
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    • 2000
  • Internet becomes very common tool for communication and data sharing. Virtual reality(VR) on web browser, and virtual prototyping and virtual manufacturing is widely used in many engineering folds. The reduction of overall development process and error minimization during data conversion becomes very crucial where sharing data via Internet and VR. This paper deals with the advantage and disadvantage of VRML format used in RP(Rapid Prototyping), and a software for RP data preparation is developed. If VRML format as an international standard for VR, is replaced with STL format, the weak points of STL format can be overcome and the technique related to virtual prototyping and virtual manufacturing can be addressed more systematically by sharing the data. The system developed in this work shows a good window to get access to a more realistic observation of an object fur an RP system from a long remote sites in a more systematic way.

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Conversion and Storage of NMEA 2000 PGN Data into IEC 61162-4 Tag Format (NMEA 2000 PGN 데이터의 IEC 61162-4 Tag 포맷으로의 변환 및 저장)

  • Lee, Ju-Hyoung;Jang, Nam-Ju;Lee, Jung-Woo;Park, Hyu-Chan;Lee, Jang-Se;Jang, Kill-Woong
    • Journal of Advanced Marine Engineering and Technology
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    • v.34 no.4
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    • pp.522-531
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    • 2010
  • Appropriate networks are required for the processing of various kinds of data generated on shipboard. The international standards, NMEA 2000 and IEC 61161-4, meet this requirement. NMEA 2000 is good for the processing of real time data, and IEC 61162-4 is better for the integrated management of such data. Therefore, NMEA 2000 data should be conversed into IEC 61162-4 format for the integrated management. This paper presents files and algorithm for the format conversion, and also describes their implementation.

Method of Format Conversion Between Link-K and KMTF Messages (Link-K와 KMTF 메시지 간 포맷 변환 방법)

  • Kim, Wan-Sik;Lee, Min-Sik;Kim, Sang-Jun;Park, Ji-Hyeon
    • Journal of the Korea Institute of Military Science and Technology
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    • v.20 no.2
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    • pp.264-271
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    • 2017
  • Link-K message is the Tactical Data Link message standard developed by the Agency for Defense Development which is optimized for the Joint Operation of ROK Armed Force. KMTF message is the standard message format of Battle Management Information System. Interconversion and propagation between these messages are definitely needed to have efficient warfare such as situation data propagation using network, the convergence of collected situation data, common situational awareness, cooperative engagement. Therefore, this study suggests a way of rule and process for format conversion between Link-K and KMTF messages.

Automatic Generation of Interactive 3D PDF Document in a 3D Viewer Environment (CAD 뷰어 기반 대화형 3D PDF 문서 생성 자동화)

  • Park, Kyeong-Ho;Choi, Young;Yang, Sang-Wook;Song, In-Ho
    • Journal of the Korean Society for Precision Engineering
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    • v.25 no.4
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    • pp.77-85
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    • 2008
  • PDF is widely accepted as a standard document format and now it supports 3D contents as well. Within the engineering application areas, this new 3D feature may be used to support sharing of 3D documents and thus collaboration between engineering departments, suppliers and partners. In this paper, we describe a system that automatically generates formatted engineering documents including 3D data converted from 3D applications such as commercial 3D CAD viewer. The system consists of two major modules. One is U3D conversion module and the other is PDF conversion module. U3D conversion module extracts geometry, view data, assembly and disassembly information from 3D viewer and converts to U3D format, currently in IDTF text file format. PDF conversion module generates a PDF file and inserts U3D data, various annotation information, and scripts for custom generated operations such as assembly and disassembly in the PDF document.

The Study on the GIS Software Engine based on PDA using GPS/GIS (GPS/GIS를 이용한 PDA기반 GIS 소프트웨어 엔진 연구)

  • PARK, Sung-Seok;KIM, Chang-Soo;SONG, Ha-Joo
    • Journal of Fisheries and Marine Sciences Education
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    • v.17 no.1
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    • pp.76-85
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    • 2005
  • GIS (Geographic Information Systems) technology is a necessary function to support location based on service by using GPS in the mobile environment. These mobile systems have basic functional limitations such as a low rate of processing, limited memory capacity, and small screen size. Because of these limitations, most of the mobile systems require development of a reduced digital map to overcome problems with large-volume spatial data. In this paper, we suggest using the reduced digital map format in order to use location based on service in a PDA environment. The processing of the proposed data format consists of map generation, redefinition of layers, creating polygons, and format conversion. The proposed data format reduces the data size by about 98% comparing with DXF format based on the digital map of Busan.

Data Conversion using SEDRIS STF (SEDRIS STF를 이용한 데이터 변환)

  • Lee, Kwang-Hyung
    • The Journal of Korean Association of Computer Education
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    • v.7 no.5
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    • pp.101-110
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    • 2004
  • The multimedia community needs an environmental data representation and interchange mechanism which not only satisfies the requirements of today's systems, but can be extended to meet future data sharing needs. This mechanism must allow for the standard representation of, and access to data. The SEDRIS STF(SEDRIS Transmittal Format)provides environment data users and producers with a clearly defined interchange specification. In this paper I develop data converter commercial data(3DS MAX) format to standard interchange format and vice verse without losing semantic of information content using SEDRIS standard interchange format.

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Design of Visual Tool for Efficient Descripting of Binary ECG File Formats (바이너리 심전도 파일 포맷의 효율적인 디스크립션을 위한 시각적 도구 설계)

  • Koo, Heung-Seo
    • Journal of the Korean Institute of Intelligent Systems
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    • v.17 no.1
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    • pp.26-31
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    • 2007
  • In this study, A BED(Binary ECG description) based binary ECG conversion system is that supports the conversion of a binary ECG format into XML-based HL7 aECG for interoperability of ECG. HL7 aECG is a XML based standard lot interoperability of ECG waveform. However, it is difficult for beginners to write the BED document of binary BED conversion system in XML. We implement a BED Studio on the Java Servlet engine that allows beginners to write BED documents more easily. Our system consists of three parts: Visual Editor, Text Editor, and Format Checking Viewer. Format Checking Viewer support users to detect the format errors in the XML files, so-called BED documents, that describe the data format of the targer binary ECG file in the BED-based binary ECG conversion system, so may reduce the format errors in BED documents.

40 Gbps All-Optical 3R Regeneration and Format Conversion with Related InP-Based Semiconductor Devices

  • Jeon, Min-Yong;Leem, Young-Ahn;Kim, Dong-Churl;Sim, Eun-Deok;Kim, Sung-Bock;Ko, Hyun-Sung;Yee, Dae-Su;Park, Kyung-Hyun
    • ETRI Journal
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    • v.29 no.5
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    • pp.633-640
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    • 2007
  • We report an experimental demonstration of 40 Gbps all-optical 3R regeneration with all-optical clock recovery based on InP semiconductor devices. We also obtain alloptical non-return-to-zero to return-to-zero (NRZ-to-RZ) format conversion using the recovered clock signal at 10 Gbps and 40 Gbps. It leads to a good performance using a Mach-Zehnder interferometric wavelength converter and a self-pulsating laser diode (LD). The self-pulsating LD serves a recovered clock, which has an rms timing jitter as low as sub-picosecond. In the case of 3R regeneration of RZ data, we achieve a 1.0 dB power penalty at $10^{-9}$ BER after demultiplexing 40 Gbps to 10 Gbps with an eletroabsorption modulator. The regenerated 3R data shows stable error-free operation with no BER floor for all channels. The combination of these functional devices provides all-optical 3R regeneration with NRZ-to-RZ conversion.

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