• Journal of Plant Biotechnology
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• 제33권4호
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• pp.297-302
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• 2006

일반적으로 체세포배를 경유한 대량증식은 증식효율이 높다. 그러나 종종 배수성 변이와 같은 체세포 변이를 야기하기도 한다. 본 연구에서는 Doritaenopsis hybrid의 체세포배 증식시 발생하는 배수성 변이체와 체세포배의 세포에 내재되어 있는 내배수화된 세포와의 관계를 구명하여 배수성 변이체 발생 원인을 밝히고자 실시되었다. 내배수성 분석결과 체세포배의 상부는 $2C{\sim}16C$의 DNA를 함유한 세포들로 구성되어 있는 반면, 중부와 하부 조직에는 $2C{\sim}32C$의 내배수성이 높은 세포들이 내재되어 있었다. 또한 체세포배 연령별로는 2주된 체세포배가 $2C{\sim}16C$ 정도의 세포로 구성되어 있는 반면 10주령의 체세포배는 $2C{\sim}64C$까지 고도로 내배수화가 진행된 세포들이 존재하였다. 이는 한 식물체에서도 부위, 연령에 따라 내배수성이 다를 수 있음을 보여주는 결과이다. 체세포배 부위중 내배수성이 낮은 상부와 높은 하부로 절단하여 각각의 절편체를 배양한 결과 배수성 변이체의 발생은 내배수성이 높은 하부를 배양하였을 때 3배 이상 높았다. 본 연구결과는 변수성 변이체의 발생원인이 내배수화된 세포에 있음을 보여주며 이를 기초로 Dtps. hybrid의 안정적인 증식체계를 구축하는데 기초가 되리라 생각된다.

• Journal of the Korean Wood Science and Technology
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• 제34권3호
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• pp.56-63
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• 2006

셀룰로오스의 가수분해 기작을 구명하기 위하여 Phanerochaete chrysosporium으로부터 74A (PcGHF74A) 유전자를 클로닝한 결과 2162 bp의 염기서열에 해당하는 721개의 아미노산을 가지고 있으며, 다른 사상균에서 유래한 GHF74와 70~77%의 상동성을 나타냈다. Phanerochaete chrysosporium GHF74B (PcGHF74B)는 family 1에 속하는 Cellulose Binding Module (CBM)을 가지고 있으며 셀룰로오스 배양계에서 다양한 전사산물이 존재하였다. PcGHF74B 전사산물에서 나타난 splice variants를 조사하기 위해서 annotation data와 sequence data로부터 primer를 설계하여 RT-PCR분석을 수행하였으며 그 결과 다양한 배양조건에서 splice variants가 존재함을 확인하였다. 첫 번째는 annotation data와 다르게 11번째 intron을 포함하고 있어 full length로 추정되어지는 것으로 2562 bp에 stop codon이 존재했으며, 두 번째는 7번째 exon 1187 bp에 stop codon을 가지고 있으며 12개의 exon으로 구성되어 있다. 세 번째는 10개의 exon과 9개의 intron을 포함하고 있으며 7번째 exon에 stop codon이 존재했다. Splice variants로서 intron에 나타난 stop codon으로 인해 활성단백질의 합성이 일어나지 않을 것이며 비활성 단백질을 생성하거나 원래의 GHF74의 기능이 아닌 다른 새로운 기능을 갖는 단백질을 생성할 수 있을 것으로 사료된다.

• Pediatric Infection and Vaccine
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• 제11권2호
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• pp.153-157
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• 2004

목 적 : TTV는 인체 감염이 확인된 최초의 circovirus로 간염을 유발할 가능성에 대해 연구가 이루어지고 있다. TLMV는 최근에 발견된 circovirus로 TTV보다 작지만 유사한 구조를 가진 것으로 알려져 있다. TLMV 감염의 성인 유병률은 약 70%인 것으로 알려지지만 소아의 유병률은 아직 확실하지 않다. 이에 저자들은 국내 소아의 TLMV 유병률을 알아보기 위하여 시행하였다. 방 법 : 2001년 6월부터 12월까지 인제의대 상계 백병원 외래를 방문한 환아중 TTV DNA에 대한 PCR이 시행되었던 88명의 혈청 검체를 대상으로 하였다. TLMV의 5'NCR(noncoding region) 특이적 시발체를 이용하여 PCR을 시행하였다. 1라운드 PCR은 M1359, M1365 시발체를 사용하여 $94^{\circ}C$ 10분, $94^{\circ}C$에서 40초, $60^{\circ}C$에서 40초, $72^{\circ}C$에서 50초, $72^{\circ}C$에서 10분의 조건에서 55회 시행하였다. 최종 산물 $2{\mu}L$에 M1360, M1366 시발체를 사용하여 1라운드와 동일한 조건에서 PCR을 55회 시행하였다. TLMV PCR 양성이 나온 10건에 대해 직접 염기 서열 분석과 계통 분석을 시행하였다. 결 과 : 소아 전체 연령에서 TLMV 감염 유병률은 49%였다. 연령별 유병률은 생후 1세 미만은 36%, 1~3세는 62%, 4~6세는 43%, 7~9세는 16%, 10~15세는 66%였다. 전체 소아의 22%에서 TTV와 TLMV의 혼합 감염이 확인되었다. TLMV PCR 산물 10건에 대한 염기 서열 분석을 시행한 결과 다른 나라의 TLMV 염기 서열과 많은 차이가 났다. 결 론 : 국내 소아의 TLMV 유병률은 49%로 비교적 높았으며 TLMV와 TTV와 혼합 감염이 발생함을 알 수 있었다. 국내에서 유행하는 TLMV의 유전형이 다른 나라와 큰 차이가 있을 가능성이 있지만 이에 대한 연구가 더 필요할 것으로 보인다.

• Journal of Periodontal and Implant Science
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• 제36권3호
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• pp.613-625
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• 2006

Periodontal ligament(PDL) cells and human gingival fibroblasts(HGFs) play important roles in development, regeneration, normal function, and pathologic alteration. PDL cells and HGFs have the similarity related with general characteristics of fibroblast such as spindle shaped morphology, the presence of vimentin intermediate filament and the synthesis of interstitial collagens and fibronectin. There were many studies about the differences between PDL cells and HGFs, but they were not about whole gene level. In this study, we tried to explain the differences of gene expression profiles between PDL cells and HGFs, and the differences among three individuals by screening gene expression patterns of PDL cells and HGFs, using cDNA microarray. Although there were some variants among three experiments, a set of genes were consistentely and differentially expressed in one cell type. Among 3,063 genes, 49 genes were more highly expressed in PDL cells and 12 genes were more highly expressed in HGFs. The genes related with cell structure and motility were expressed more highly in PDL cells. These are cofilin 1, proteoglycan 1 secretory granule, collagen type I(${\alpha}$ 1), adducin gamma subunit, collagen type III(${\alpha}$ 1), fibronectin, lumican(keratan sulfate proteoglycan), and ${\alpha}$ -smooth muscle actin. Tissue inhibitor of metalloproteinase known as the enzyme controlling extracellular matrix with matrix metalloproteinase is more highly expressed in PDL cells, osteoprotegerin known as osteoclastogenesis inhibitory factor is more highly expressed in HGFs. We performed northern blot to verify cDNA microarray results on selected genes such as tissue inhibitor of metalloproteinase, fibronectin, osteoprogeterin. The result of northern blot analysis showed that each cell expressed the genes in similar pattern with cDNA microarray result. This result indicates that cDNA microarray is a reliable method in screening of gene expression profiles.

• Asian Pacific Journal of Cancer Prevention
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• 제15권16호
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• pp.6505-6510
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• 2014

Objective: This study was conducted to identify whether polymorphic variants of set domain-containing protein 8 (SET8) and tumor protein p53 (TP53) codon 72, either independently or jointly, might be associated with increased risk for cervical cancer. Methods: We genotyped SET8 and TP53 codon 72 polymorphisms of peripheral blood DNA from 114 cervical cancer patients and 200 controls using the polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) and direct DNA sequencing. Results: The frequency of SET8 CC (odds ratios (OR) = 2.717, 95% CI=1.436-5.141) or TP53 GG (OR=2.168, 95% CI=1.149-4.089) genotype was associated with an increased risk of cervical cancer on comparison with the SET8 TT or TP53 CC genotypes, respectively. In additional, interaction between the SET8 and TP53 polymorphisms increased the risk of cervical cancer in a synergistic manner, with the OR being 9.913 (95% CI=2.028-48.459) for subjects carrying both SET8 CC and TP53 GG genotypes. Conclusion: These data suggest that there are significant associations between the miR-502-binding site SNP in the 3'-UTR of SET8 and the TP53 codon 72 polymorphism with cervical cancer in Chinese, and there is a gene-gene interaction.

• Asian Pacific Journal of Cancer Prevention
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• 제16권2호
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• pp.775-781
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• 2015

Background: RB1 (retinoblastoma 1) was reportedly one of the major determinative factors for sensitivity to taxanes in previous studies. In this study, we investigated the influence of RB1 single nucleotide polymorphisms (SNPs) on the efficacy of platinum-taxane regimens in advanced NSCLC patients. Materials and Methods: 234 cases of patients with advanced NSCLC who were treated with first-line platinum-taxane agents were enrolled in this study. Genomic DNA was extracted from patients' peripheral blood samples using a QIAamp DNA Maxi Kit, and genotyped by iSelect HD Bead-Chip. Results: Regression analyses were conducted through the univariate and multivariate Cox proportional hazards model in the 234 patients. The results showed that of the eight RB1 tagSNPs, only rs4151510 was a positive predictive factor for the advanced NSCLC patients treated with platinum taxanes regimen. The patients with G/G genotype of RB rs4151510 had longer overall survival (OS) than the non-G/G genotype (p=0.018). The histology was also correlated with OS in the whole advanced NSCLC patients. Three tagSNPs of RB1, rs4151510, rs4151465, rs9568036 were significantly associated with OS in the advanced NSCLC patients with squamous cell histology using Kaplan-Meier overall survival analysis stratified by histology. Conclusions: RB1 genomic variants were correlated with the efficacy of platinum-taxanes regimen. RB rs4151510 is an independent factor of the prognosis of NSCLC patients receiving platinum-taxane chemotherapy.

• Asian Pacific Journal of Cancer Prevention
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• 제14권3호
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• pp.1687-1689
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• 2013

We performed a case-control study to investigate whether SNPs of CHIP might affect the development of IA in Chinese Han nationality. We believe we are the first to have screened IA patients for mutations in the CHIP gene to determine the association with these variants. The study group comprised 224 Chinese Han nationality patients with at least one intracranial aneurysm and 238 unrelated healthy Han nationality controls. Genomic DNA was isolated from blood leukocytes. The entire coding regions of CHIP were genotyped by PCR amplification and DNA sequencing. Differences in genotype and allele frequencies between patients and controls were tested by the chi-square method. Genotype and allele frequencies of the SNP rs116166850 was demonstrated to be in Hardy-Weinberg equilibrium. No significant difference in genotype or allele frequencies between case and control groups was detected at the SNP. Our data do not support the hypothesis of a major role for the CHIP gene in IA development in the Chinese Han population.

• Asian Pacific Journal of Cancer Prevention
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• 제16권12호
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• pp.4927-4935
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• 2015

Northeastern India is a major nasopharyngeal carcinoma (NPC) high risk-area although the rest of the country has very low incidence. A case-control study of 105 NPC cases and 115 controls was conducted to identify the potential risk factors for NPC development in this region. Information was collected by interviewer about socio-demographic characteristics, cigarette smoking, alcohol consumption, dietary history, occupational history, and a family history of cancer. Epstein-Barr viral load was assayed from the blood DNA by real time PCR. Associations between GSTs genotypes, cytochrome P450 family including CYP1A1, CYP2E1 and CYP2A6 polymorphisms and susceptibility to relationship between the diseases were studied using PCR-RFLP assay. Results indicate that Epstein-Barr virus load was significantly higher in patients compared to controls (p<0.0001). Furthermore, concentration of blood EBV-DNA was significantly higher in advanced stage disease (Stage III and IV) than in early stage disease (Stage I and II) (p<0.05). Presence of CYP2A6 variants that reduced the enzyme activity was significantly less frequent in cases than controls. Smoked meat consumption, exposure to smoke, living in poorly ventilated house and alcohol consumption were associated with NPC development among the population of Northeastern India. Thus, overall our study revealed that EBV viral load and genetic polymorphism of CYP2A6 along with living practices which include smoked meat consumption, exposure to smoke, living in poorly ventilated houses and alcohol consumption are the potential risk factors of NPC in north eastern region of India. Understanding of the risk factors and their role in the etiology of NPC are helpful forpreventive measures and screening.

• Asian Pacific Journal of Cancer Prevention
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• 제14권10호
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• pp.5839-5842
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• 2013

Aim: We assessed the association between genetic variants of XPG, XPA, XPD, CSB, XPC and CCNH in the nucleotide excision repair (NER) pathway and risk of prostate cancer. Methods: We genotyped the XPG, XPA, XPD, CSB, XPC and CCNH polymorphisms by a 384-well plate format on the MassARRAY(R) platform. Multivariate logistical regression analysis was used to assess the associations between the six gene polymorphisms and risk of prostate cancer. Results: Individuals carrying the XPG rs229614 TT (OR=2.01, 95%CI=1.35-3.27) genotype and T allele (OR=1.73, 95%CI=1.37-2.57) were moderately significantly associated with a higher risk of prostate cancer. Subjects with XPD rs13181 G allele had a marginally increased risk of prostate cancer, with adjusted OR(95%CI) of 1.53 (1.04-2.37). Moreover, individuals carrying with CSB rs2228526 GG genotype (OR=2.05, 95% CI=1.23-3.52) and G allele (OR=1.56, 95%CI=1.17-2.05) were associated with a higher increased risk of prostate cancer. The combination genotype of XPG rs2296147 T and CSB rs2228526 G allele had accumulative effect on the risk of this cancer, with an OR (95% CI) of 2.23(1.37-3.59). Conclusions: Our study indicates that XPG rs2296147 and CSB rs2228526 polymorphisms are significantly associated with increased risk of prostate cancer, and that combination of XPG rs2296147 T allele and CSB rs2228526 G allele is strongly associated with an increased risk.

• 식물조직배양학회지
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• 제26권4호
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• pp.229-233
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• 1999

본 연구에서는 낙엽송 배발생조직의 장기저장을 위한 가능성에 대하여 조사하였다. 0.4M혹은 20% PEG로 24시간 전 처리하여 -0.33$^{\circ}C$/min의 동결온도 하강율로 초저온시켰을 때 높은 조직생중량을 보인 반면 -0.5 혹은 -1.$0^{\circ}C$/min의 경우 초저온 후 조직의 생중량이 저조한 것으로 나타났다. 1, 7, 및 28일간 초저온보존된 조직을 회수하여 재생장시킨 다음 PCR을 이용하여 변이분석을 한 결과 초저온보존 기간에 관계없이 DNA변이는 전혀 나타나지 않았다. 초저온보존된 배발생 조직으로부터 체세포배 유도 및 식물체 재분화를 유도할 수 `있었다.