• Journal of Plant Biotechnology
• /
• v.37 no.2
• /
• pp.196-204
• /
• 2010

With the completion of genome sequencing of several organisms, attention has been focused to determine the function and functional network of proteins by proteome analysis. The recent techniques of proteomics have been advanced quickly so that the high-throughput and systematic analyses of cellular proteins are enabled in combination with bioinformatics tools. Furthermore, the development of proteomic techniques helps to elucidate the functions of proteins under stress or diseased condition, resulting in the discovery of biomarkers responsible for the biological stimuli. Ultimate goal of proteomics orients toward the entire proteome of life, subcellular localization, biochemical activities, and their regulation. Comprehensive analysis strategies of proteomics can be classified as three categories: (i) protein separation by 2-dimensional gel electrophoresis (2-DE) or liquid chromatography (LC), (ii) protein identification by either Edman sequencing or mass spectrometry (MS), and (iii) quanitation of proteome. Currently MS-based proteomics turns shiftly from qualitative proteome analysis by 2-DE or 2D-LC coupled with off-line matrix assisted laser desorption ionization (MALDI) and on-line electrospray ionization (ESI) MS, respectively, to quantitative proteome analysis. Some new techniques which include top-down mass spectrometry and tandem affinity purification have emerged. The in vitro quantitative proteomic techniques include differential gel electrophoresis with fluorescence dyes, protein-labeling tagging with isotope-coded affinity tag, and peptide-labeling tagging with isobaric tags for relative and absolute quantitation. In addition, stable isotope labeled amino acid can be in vivo labeled into live culture cells through metabolic incorporation. MS-based proteomics extends to detect the phosphopeptide mapping of biologically crucial protein known as one of post-translational modification. These complementary proteomic techniques contribute to not only the understanding of basic biological function but also the application to the applied sciences for industry.

• The Plant Pathology Journal
• /
• v.29 no.3
• /
• pp.274-284
• /
• 2013

The incidence of Broad bean wilt virus 2 (BBWV2) on red pepper was investigated using the samples obtained from 24 areas of 8 provinces in Korea. Two hundred and five samples (79%) out of 260 collected samples were found to be infected with BBWV2. While the single infection rate of BBWV2 was 21.5%, the co-infection rate of BBWV2 with Cucumber mosaic virus, Pepper mottle virus, Pepper mild mottle virus and/or Potato virus Y was 78.5%. To characterize the genetic diversity of BBWV2 Korean isolates, 7 isolates were fully sequenced and analyzed. Phylogenetic analyses revealed that BBWV2 isolates could be divided largely into two groups as Group I and Group II. Based on the partial sequence analyses, 153 selected BBWV2 isolates were subgrouped into GS-I (21.6%), GS-II (3.9%) and GS-III (56.9%). BBWV2 GS-III, which was predominant in Korea, appears to be a new combination between Group I RNA-1 and Group II RNA-2. Viral disease incidence of BBWV2 on red pepper was under 2% before 2004. However, the incidence was increased abruptly to 41.3% in 2005, 58.2% in 2006 and 79% in 2007. These rapid increases might be related with the emergence of new combinations between BBWV2 groups.

• Korean Journal of Medicinal Crop Science
• /
• v.9 no.4
• /
• pp.295-300
• /
• 2001

This experiment was conducted to evaluate the germination rate according to temperature, pelleting materials, pelleted size, seed storage periods under light and dark conditions in Rehmannia glutinosa. The highest germination rate was obtained from $25^{\circ}C$ in both light and dark condition. Two-year old seeds showed higher germination rate compared to one-year old seed. Talc material showed the highest germination rate among the pelleting materials by 82.5%. Among the different pelleting sizes, the highest germination rate was shown in 2.0 mm, and especially Talc pelleting showed 100% germination rate on 17days after seeding. In case of combination of pelleting materials, both of talc + vermiculite, zeolite + vermiculite showed lower germination rate than the control and 0.7 mm pelleted seed showed the highest germination rate.

• Journal of The Korean Society of Grassland and Forage Science
• /
• v.16 no.4
• /
• pp.299-306
• /
• 1996

This experiment was conducted from 1991 to 1993 at the forage experimental field, College of Agriculture and Life Sciences, SNU, Suweon to investigate the effects of previous crop residues on growth and yield of succeeding corn(2ea mays L.) and also to determine the best double cropping system necessary to maximize the total dry matter yield of winter forage crops plus corn for silage. In this experiment, treatments consisted of no crop as a control, late maturing Kodiak rye(Seca1e cereale L.), Bamapoli forage rape(Brassica napus Subsp. oleifera L.), G-sprinter oats(Avem sativa L.), Chief crimson clover(Trifolium incarnatum L.), Jackson Italian ryegrass(lo1ium rnultiJlorum L.), Vantage vetch(Vicia sativa L.) and early maturing Koolgrazer rye(Seca1e cereale L.). Corn leaf number and silking date were not significantly affected by previous crop residues, but the leaf number of corn following Italian ryegrass was reduced by 1.9 relative to no previous crop. The plant height and LA1 were significantly reduced during early development when corn followed Italian ryegrass and late maturing Kodiak rye (p<0.05). The dry matter and estimated TDN yields of corn were significantly reduced when corn followed Italian ryegrass and late maturing Kodiak rye. The yield reductions for corn following Italian ryegrass, late maturing Kodiak rye and early maturing Koolgrazer rye, relative to com when no previous crops were planted, were 34, 17 and 8%, respectively. Therefore, the reduction in corn growth and yield in this experiment could be explained by an allelopathic effect resulting from the Italian ryegrass and rye residues. The highest total dry matter yield of 30,509kg/ha was obtained from an early maturing rye-corn double cropping sequence in combination among the eight cropping systems.

• Applied Biological Chemistry
• /
• v.23 no.4
• /
• pp.246-250
• /
• 1980

The effects of two Cytozyme complexes, Crop Plus and Seed Plus, applied to rice (variety: Jinheung) were evaluated during the 1980 rice growing season. Primary objectives were directed to determine the effects of rates, timing and method of application of the products on the yield of rice. For the Seed Plus test, seed was soaked in the diluted Seed Plus solution(1 : 100) for 24 hours just prior to sowing. The Crop Plus was diluted to 1 : 12 for seedling treatment. Seedling roots were immersed in the diluted solution for 3 hours before transplanting. Crop Plus spray applied at the rates of 450ml/ha or 900ml/ha when rice plants were in the panicle initiation, heading or tillering stage respectively to compare the effects of rates and timing of application. The weather was not favorable for rice growth during the growing season except the tillering stage. The foliar spray at the tillering stage was more effective than the spray at the panicle initiation, and the rates of 900ml/ha showed better results than 450ml/ha. Combination of seed treatment and foliar spray increased grain yield by 16% over untreated control plots.

• Journal of Microbiology and Biotechnology
• /
• v.34 no.7
• /
• pp.1464-1474
• /
• 2024

Soil extracellular enzyme plays a vital role in changing soil nitrogen (N) mineralization of rice field. However, the effects of soil extracellular enzyme activities (EEA) and microbial community composition response to N mineralization of rice field under short-term tillage treatment needed to be further explored. In this study, we investigated the impact of short-term (8-year) tillage practices on rhizosphere soil N transformation rate, soil enzyme activities, soil microbial community structure, and the N mineralization function gene abundances in double-cropping rice field in southern China. The experiment consisted of four tillage treatments: rotary tillage with crop straw input (RT), conventional tillage with crop straw input (CT), no-tillage with crop straw retention (NT), and rotary tillage with all crop straw removed as a control (RTO). The results indicated that the rhizosphere soil N transformation rate in paddy field under the NT and RTO treatments was significantly decreased compared to RT and CT treatments. In comparison to the NT and RTO treatments, soil protease, urease, β-glucosaminidase, and arginase activities were significantly improved by the CT treatment, as were abundances of soil sub, npr, and chiA with CT and RT treatments. Moreover, the overall diversity of soil bacterial communities in NT and RTO treatments was significantly lower than that in RT and CT treatments. Soil chitinolytic and bacterial ureolytic communities were also obviously changed under a combination of tillage and crop straw input practices.

• Korean Journal of Medicinal Crop Science
• /
• v.21 no.2
• /
• pp.91-96
• /
• 2013

This study describes the identification of Panax species using mitochondrial consensus primers. Initially, a total of thirty primers were tested in ten Korean ginseng cultivars and two foreign Panax species, P. quinquefolius and P. notoginseng. In the polymerase chain reaction (PCR) amplification results, three primers (cox1, nad1/2-3 and nad2/1-2) generated co-dominant polymorphic banding patterns discriminating Korean ginseng cultivars from P. quinquefolius and P. notoginseng. However, these primers could not generated polymorphisms among the Korean ginseng cultivars, and simply represented species-specific polymorphisms for P. quinquefolius and P. notoginseng. Primers PQ91 and PN418 were designed from the consensus sequence of nad1/2-3 region. Two banding patterns (A or B) were detected in PQ91. Korean ginseng cultivars and P. notoginseng shared the same banding pattern (A type) and P. quinquefolius was identified another banding pattern (B type). In the case of PN418, two banding patterns (A or B) were detected in the Korean ginseng cultivars and two foreign Panax species. Korean ginseng cultivars and P. quinquefolius shared the same banding pattern (A type) and P. notoginseng was identified another banding pattern (B type). The combination banding patterns of three Panax species, Korean ginseng cultivars (Panax ginseng C. A. Mey.), P. quinquefolius and P. notoginseng, was identified as 'AA', 'BA' and 'AB', respectively. Consequently, PQ91 and PN418 primer sets can be used to distinguish among Panax species.

• Korean Journal of Soil Science and Fertilizer
• /
• v.49 no.5
• /
• pp.531-540
• /
• 2016

The adoption of legume cover crops in no-tillage system can contribute to improve soil fertility by providing several benefits, including reduction in soil erosion, suppression of weed growth and N supply to subsequent crops. We conducted a field study to investigate the effect of cover crops and nitrogen fertilization rates on yield and nitrogen use efficiency of waxy corn (Zea mays L.) in no-tillage upland field. Two legume cover crops, hairy vetch (Vicia villosa Roth) and crimson clover (Trifolium incarnuturn L.) were mechanically terminated with roller in early June. For each cover crop treatment, nitrogen (N) fertilizer was applied at three different rates (145, 72.5 and $0kg\;N\;ha^{-1}$). The growth and yield characteristics of corn were significantly affected by the N fertilization rates in crimson clover plots, which suggest N mineralization from the cover crop residue was not sufficient. In contrast, N fertilization rates had no significant effect on growth and yield of corn in hairy vetch plots, indicating that the amount of N released from the cover crop is large enough to meet most of the N requirement of corn. However, the application of N fertilizer in hairy vetch cover plots resulted in slight increase of crop yield, though not statically significant, and high levels of N concentration in corn plant tissue possibly due to luxury consumption of N. Organic residues on the soil surface in hairy vetch cover plots had substantial amounts of N after harvest, ranging from 100 to $116kg\;N\;ha^{-1}$, which is presumably retained during winter season and released by microbial mineralization in subsequent year. The highest nitrogen yield efficiency was achieved in the plot with hairy vetch cover and no N fertilizer application, followed by the plot with hairy vetch cover and $72.5kg\;N\;ha^{-1}$ fertilization rate. In conclusion, hairy vetch showed better performance in corn productivity as compared with crimson clover. In addition, it was concluded that the application of N fertilizer between 0 and $72.5kg\;N\;ha^{-1}$ in combination with hairy vetch cover crop might be most efficient for corn yield under no-tillage system with climatic and soil characteristics similar to those of the experimental site.

• Journal of the Korean Association of Geographic Information Studies
• /
• v.18 no.3
• /
• pp.76-88
• /
• 2015

This paper presents a classification method based on the combination of active learning with temporal contextual information extracted from past land-cover maps for the classification of crop cultivation areas. Iterative classification based on active learning is designed to extract reliable training data and cultivation rules from past land-cover maps are quantified as temporal contextual information to be used for not only assignment of training data but also relaxation of spectral ambiguity. To evaluate the applicability of the classification method proposed in this paper, a case study with MODIS time-series vegetation index data sets and past cropland data layers(CDLs) is carried out for the classification of corn and soybean in Illinois state, USA. Iterative classification based on active learning could reduce misclassification both between corn and soybean and between other crops and non crops. The combination of temporal contextual information also reduced the over-estimation results in major crops and led to the best classification accuracy. Thus, these case study results confirm that the proposed classification method can be effectively applied for crop cultivation areas where it is not easy to collect the sufficient number of reliable training data.

• Korean Journal of Breeding Science
• /
• v.41 no.3
• /
• pp.292-298
• /
• 2009

A new rice cultivar "Keumo 3" was developed for adopting under double cropping system with after or before cash crop cultivation. It was selected from the cross-combination between YR17202 $F_2$/Shinkeumobyeo//YR15727-B-B-B-102. The parent, YR17202 $F_2$ individual plant, was used for tolerance to lodging, it derived from a cross between Nonganbyeo/Shinkeumobyeo. Nonganbyeo is well known to lodging tolerance cultivar, as well as biotic stress, because it was developed by crossing with Tongil type. And the YR15727-B-B-B-102 line used as another parent with short growth duration, likewise highly resistance to rice blast disease. The pedigree derived from the cross-combination YR17202 $F_2$/Shinkeumobyeo//YR15727-B-B-B-102 were generated to $F_7$, and a best line among them named as Milyang 201. After a series of yield trials, including local adaptability test conducted throughout the peninsular of Korea, Milyang 201 was registered with the name of "Keumo 3" in 2005. The cultivar belongs to a early maturing group and heads 4 days earlier than Keumobyeo, a standard cultivar. It has short culm, and less spikelet number per panicle than Keumobyeo. However, its milled rice yield grown under extremely late transplanting time, 10. July, over the 3 local sites for 2003-2005 years, averaged 4,48 MT/ha, which is 6% higher than the standard, Keumobyeo. "Keumo 3" has showed a durable resistance to leaf blast disease during fourteen blast nurseries screening covered from south to north in Korea for 2003-2007 years. And it was confirmed harbours pi-zt, a durable blast resistance gene. Moreover it was incompatible with 19 blast isolates under artificial inoculation, except one isolate, K1101. Additionally, "Keumo 3" exhibits resistance to $K_1$, $K_2$ and $K_3$ of bacterial blight pathogen, as well as strip virus disease resistance, and moderate resistance to dwarf virus disease. Consequently, the new rice cultivar "Keumo 3" would be well adopted where a bio stress makes a big problem annually.