• Title/Summary/Keyword: Cluster Host

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First Report of the Peanut Stripe Strain of Bean common mosaic virus (BCMVPSt) Infecting Mungbean in Korea

  • Choi, Hong-Soo;Kim, Mi-Kyeong;Park, Jin-Woo;Lee, Su-Heon;Kim, Kook-Hyung;Kim, Jeong-Soo;Were, Hassan Karakacha;Choi, Jang-Kyung;Takanami, Yoichi
    • The Plant Pathology Journal
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    • v.22 no.1
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    • pp.46-50
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    • 2006
  • A virus causing chlorotic ringspot, yellow mosaic and vein clearing symptoms was prevalent on mungbean plants around Taean, Korea. The isolate caused mosaic on Chenopodium quinoa, Nicotiana benthamiana, Phaseolus vulgaris and Vida laba but no symptoms on peanut plants. Inclusion bodies such as scroll, pinwheel and laminated aggregates induced by the virus in the host cells were similar to those produced by members of the Potyvirus subdivision III. Multiple alignment as well as cluster dendrograms of the 709 nucleotide region comprising part of the coat protein gene and 3'untranslated region (UTR) showed that the isolate belongs to the BCMV-PSt subgroup. Altogether, these results support the identification of the causal virus as peanut stripe strain of Bean common mosaic virus (BCMV-PSt).

Response of Commercial Cotton Cultivars to Fusarium solani

  • Abd-Elsalam, Kamel A.;Omar, Moawad R.;El-Samawaty, Abdel-Rheem;Aly, Aly A.
    • The Plant Pathology Journal
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    • v.23 no.2
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    • pp.62-69
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    • 2007
  • Twenty-nine isolates of Fusarium solani, originally isolated from diseased cotton roots in Egypt, were evaluated for their ability to cause symptoms on four genetically diverse cotton cultivars. Analysis of variance showed highly significant variance among cultivars, and isolates as well as the isolate x genotype interactions were highly significant(p < 0.0001). Although most isolates showed intermediate pathogenicity, there were two groups of isolates that showed significant differences in pathogenicity on all four cultivars. None of the cultivars were found to be immune to any of the isolates. On all cultivars, there were strong significant positive correlations between dry weight and each of preemergence damping-off, survival, and plant height. Considering 75% similarity in virulence, two groups comprising a total of 29 isolates were recognized. Ninety-three percent of the isolates have the same pathogenicity patterns with consistently low pathogenicity, and narrow diversity of virulence. Isolates Fs4 and Fs5 shared the same distinct overall virulence spectrum with consistently high pathogenicity. There was no clear-cut relationship between virulence of the isolates based on reaction pattern on 4 cultivars and each of host genotype, previous crop, and geographic origin.

Subpopulation in periopheral blood leukocyte of Korean native cattle by using monoclonal antibodies specific to bovine leukocyte differentiation antigen (백혈구 표면항원 특이 단크론항체를 이용한 한우의 말초혈액 백혈구 아군에 관한 연구)

  • Moon, Jin-san;Park, Yong-ho;Jung, Suk-chan;Ku, Bok-gyeong;Kang, Byong-kyu
    • Korean Journal of Veterinary Research
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    • v.36 no.2
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    • pp.337-348
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    • 1996
  • The proportion of leukocyte subpopulation in the host is of a great importance in understanding their functions and disease progress. Many methods have been developed to seperate leukocytes and to measure their activities. Characterization of immune cell subpopulations in Korean native cattle was performed using a set of monoclonal antibodies specific which are specific to bovine leukocyte differentiation antigen. Peripheral blood leukocytes from fifty Korean native and ten Holstein cattle were collected and analyzed for the investigation of leukocyte subpopulation by using monoclonal antibodies and flow cytometry. The result indicated that Korean native cattle have significantly higher proportion of leukocyte subpopulations expressing MHC class II molecules and BoCD4 than Holstein cattle.

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Biochemical Characterization of an ABC Transporter Gene Involved in Cephabacin Biosynthesis in Lysobacter lactamgenus

  • Park, Myoung-Jin;Yon, Jei-Oh;Lim, Si-Kyu;Ryu, Dewey D.-Y.;Nam, Doo-Hyun
    • Journal of Microbiology and Biotechnology
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    • v.14 no.3
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    • pp.635-638
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    • 2004
  • An ATP-binding-cassette (ABC) transporter gene in the cephabacin biosynthetic gene cluster of Lysobacter lactamgenus was characterized. The amplified orf10 (cpbJ) gene was subcloned into pET-28a(+) vector and expressed in E. coli BL21(DE3) strain by 0.5 mM IPTG at $30^{\circ}C$. The membrane fraction of recombinant E. coli cells was separated by ultracentrifugation, and solubilized using 2.5% octyl-$\beta$-D-glucoside. Using the solubilized membrane fraction, the artificial proteoliposomes were reconstituted and analyzed for the biological activity of CpbJ protein. Upon measuring ATPase activity, the proteoliposome made from recombinant E. coli membrane proteins showed slightly higher activity than that from host E. coli membrane proteins. In the measurement of membrane transport activity, the reconstituted proteoliposome of recombinant E. coli membrane proteins exhibited higher activity when both substrates of cephalosporin C and L-Ala-L-Ser were applied, compared to the case of cephalosporin C or L-Ala-L-Ser only. It implies that the CpbJ protein is an ABC transporter secreting cephabacin antibiotics synthesized in cytoplasm.

Genetic Diversity and Differentiation of Colletotrichum spp. Isolates Associated with Leguminosae Using Multigene Loci, RAPD and ISSR

  • Mahmodi, Farshid;Kadir, J.B.;Puteh, A.;Pourdad, S.S.;Nasehi, A.;Soleimani, N.
    • The Plant Pathology Journal
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    • v.30 no.1
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    • pp.10-24
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    • 2014
  • Genetic diversity and differentiation of 50 Colletotrichum spp. isolates from legume crops studied through multigene loci, RAPD and ISSR analysis. DNA sequence comparisons by six genes (ITS, ACT, Tub2, CHS-1, GAPDH, and HIS3) verified species identity of C. truncatum, C. dematium and C. gloeosporiodes and identity C. capsici as a synonym of C. truncatum. Based on the matrix distance analysis of multigene sequences, the Colletotrichum species showed diverse degrees of intera and interspecific divergence (0.0 to 1.4%) and (15.5-19.9), respectively. A multilocus molecular phylogenetic analysis clustered Colletotrichum spp. isolates into 3 well-defined clades, representing three distinct species; C. truncatum, C. dematium and C. gloeosporioides. The ISSR and RAPD and cluster analysis exhibited a high degree of variability among different isolates and permitted the grouping of isolates of Colletotrichum spp. into three distinct clusters. Distinct populations of Colletotrichum spp. isolates were genetically in accordance with host specificity and inconsistent with geographical origins. The large population of C. truncatum showed greater amounts of genetic diversity than smaller populations of C. dematium and C. gloeosporioides species. Results of ISSR and RAPD markers were congruent, but the effective maker ratio and the number of private alleles were greater in ISSR markers.

Spectroscopy Of Globular Clusters In M87

  • Kim, Soo-Young;Tamura, Naoyuki;Yoon, Seok-Jin;Sohn, Sang-Mo;Arimoto, Nobuo;Kodama, Tadayuki;Yamada, Yoshihiko;Lee, Young-Wook;Kim, Hak-Sub;Chung, Chul;Rey, Soo-Chang
    • The Bulletin of The Korean Astronomical Society
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    • v.35 no.2
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    • pp.31.2-31.2
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    • 2010
  • We have performed a spectroscopic study of globular cluster (GC) system associated with the Virgo cD galaxy M87 using the Subaru/FOCAS MOS mode. We derive ages, metallicities and abundance ratios from the GC spectra using Simple Stellar Population (SSP) models. The metallicity distribution function (MDF) obtained empirically based on Milky Way GCs is consistent with the MDF derived from SSP models. A comparison with a meta-analysis using literature data sample of 15 other GC systems shows good agreement with our results. The properties of GCs acquired from the spectra will be used to test the recent theoretical prediction of a significant inflection along the colour-metallicity relations (Yoon et al. 2006). If confirmed, the non-linearity of the relations would shed new light on the interpretation of the GC colour bimodality. The robustness of our results is being tested against the choice of a SSP model, measurement errors and sample selection towards the goal of better understanding the formation history of GCs and host galaxy.

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A study AGN activity on environmental dependence in the SDSS late-type galaxies

  • Kim, Minbae;Choi, Yun-Yung;Kim, Sungsoo S.
    • The Bulletin of The Korean Astronomical Society
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    • v.43 no.1
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    • pp.57.4-58
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    • 2018
  • We explore the role of various environments in triggering star formation (SF) and narrow-line active galactic nucleus (AGN) in SDSS spiral galaxies and the SF-AGN connection, using a volume-limited sample with $M_r$ < -19.5 and 0.02 < z < 0.055 selected from the SDSS Release 7. To avoid the dependency of AGN activity on bulge mass, the central velocity dispersion of the sample galaxies is limited to have a narrow range of $130{\leq}{\sigma}{\leq}200km\;s^{-1}$. We note that in gas sufficient galaxies, AGN feeding lags behind starburst, whereas as the gas exhausts, the SF slows down and AGN seems to even prevent the SF, and thus divide the high-${\sigma}$ sample into two subsamples according to their cold gas content at central region traced by fiber star formation rate, $SFR_{fib}$. We find that a high density (cluster) environment causes a significant increase in AGN activity as well as gas depletion in host galaxies. However, the finding is only noticeable in the high-${\sigma}$ and low $SFR_{fib}$ sample. It seems that a galaxy interaction with the nearest neighbor directly affects the SF of the central region. However, it is unclear whether it directly affects AGN activity.

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A Study on the Hydriding Reaction Characteristics and the Change of the Hydriding Reaction Rates of MmNi4.5Al0.5 during Temperature-Induced Cycling (MmNi4.5Al0.5의 수소화 반응특성 및 Temperature-Induced Cycling에 따른 수소화 반응속도의 변화에 관한 연구)

  • Kim, Soo-Ryoung;Lee, Jai-Young
    • Transactions of the Korean hydrogen and new energy society
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    • v.1 no.1
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    • pp.1-8
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    • 1989
  • The hydriding kinetic mechanism and the change of the hydriding reaction rate of $MmNi_{4.5}Al_{0.5}$ during the thermally induced hydrogen absorption-desorption cycling are investigated. Comparison of the reaction rate data which are obtained by the pressure sweep method with the theoretical rate equations suggests that the hydriding rate controlling step has changed from the dissociative chemisorption of hydrogen molecules at the surface to the hydrogen diffusion through the hydride phase with the increase of the hydriding fraction. These hydriding kinetic mechanism is not changed during the cycling. However, the intrinsic hydriding reaction rate of $MmNi_{4.5}Al_{0.5}$ after 5500 cycles increases significantly comparing with the activated one. It is suggested that the change of the hydriding kinetic behavior due to intrinsic degradation of $MmNi_{4.5}Al_{0.5}$ can be interpreted as follows ; the formation of nickel cluster at the surface of the sample and the host metal atom exchange in bulk by thermal cycling.

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Investigating X-ray cavities and the environmental effects

  • Shin, Jaejin;Woo, Jong-Hak;Mulchaey, John S.
    • The Bulletin of The Korean Astronomical Society
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    • v.41 no.1
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    • pp.34.2-34.2
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    • 2016
  • X-ray cavities are typically detected as surface brightness depression in X-ray diffuse emission from hot gas in high resolution X-ray images (i.e., Chandra and XMM-Newton). Showing the coincidence of location with radio jets, X-ray cavities imply that the radio jets interact with interstellar/intergalactic medium. It is important to understand them since they can be a clue of understanding AGN feedback to their host galaxies. To understand the physics of the AGN feedback, X-ray cavity has been actively studied while there are only a few statistical studies on X-ray cavity based on small or incomplete samples. Hence, a systematic study with a large sample is needed. With the condition of sufficient X-ray photons to detect surface brightness depression, we constructed a large sample of 133 galaxy clusters, galaxy groups, and individual galaxies to investigate X-ray cavities. We detected 201 cavities from 94 objects using two detection methods (i.e., beta-modeling and unsharp masking method), and confirmed the cavity size-distance relation over a large dynamical range. The size-distance relation does not vary for different environments (i.e., galaxy cluster, groups, and individual galaxies), suggesting that there is little environmental effect on the formation of X-ray cavity.

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Degradation of Trichloroethylene by a Growth-Arrested Pseudomonas putida

  • Hahm, Dae-Hyun
    • Biotechnology and Bioprocess Engineering:BBE
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    • v.3 no.1
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    • pp.11-14
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    • 1998
  • A toluene-oxidizing strain of Pseudomanas mendocina KR1 containing toluene-4-mono-oxygenase (TMO) completely degrades TCE with the addition of toluene as a co-substrate in aerobic condition. In order to construct in situ bioremediation system for TCE degradation without any growth-stimulating nutrients or toxic inducer such as toluene, we used the carbon-starvation promoter of Pseudomonas putida MK1 (Kim, Y. et al., J. bacteriol., 1995). Upon entry into the stationary phase due to the deprivation of nutrients, this promoter is strongly induced without further cell growth. The TMO gene cluster (4.5 kb) was spliced downstream of the carbon starvation promoter of Pseudomonas putida MK1, already cloned in pUC19. TMO under the carbon starvation promoter was not expressed in E. coli cells either in stationary phase or exponential phase. For TMO expression in Pseudomonas strains, tmo and carbon starvation promoter region were recloned into a modified broad-host range vector pMMB67HES which was made from pMMB67HE(8.9 kb) by deletion of tac promoter and lacIq (about 1.5 kb). Indigo was produced by TMO under the carbon starvation promoter in a Pseudomonas strain of post-exponential phase on M9 (0.2% glucose and 1mM indole) or LB. 18% of TCE was degraded in 14 hours after entering the stationary phase at the initial concentration of 6.6 ${\mu}$M in liquid phase.

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