• Journal of Applied Biological Chemistry
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• v.51 no.6
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• pp.262-271
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• 2008

Natural abundances of stable isotopes of nitrogen and carbon (${\delta}^{15}N$ and ${\delta}^{13}C$) are being widely used to study N and C cycle processes in plant and soil systems. Variations in ${\delta}^{15}N$ of the soil and the plant reflect the potentially variable isotope signature of the external N sources and the isotope fractionation during the N cycle process. $N_2$ fixation and N fertilizer supply the nitrogen, whose ${\delta}^{15}N$ is close to 0%o, whereas the compost as. an organic input generally provides the nitrogen enriched in $^{15}N$ compared to the atmospheric $N_2$. The isotope fractionation during the N cycle process decreases the ${\delta}^{15}N$ of the substrate and increases the ${\delta}^{15}N$ of the product. N transformations such as N mineralization, nitrification, denitrification, assimilation, and the $NH_3$ volatilization have a specific isotope fractionation factor (${\alpha}$) for each N process. Variation in the ${\delta}^{13}C$ of plants reflects the photosynthetic type of plant, which affects the isotope fractionation during photosynthesis. The ${\delta}^{13}C$ of C3 plant is significantly lower than, whereas the ${\delta}^{13}C$ of C4 plant is similar to that of the atmospheric $CO_2$. Variation in the isotope fractionation of carbon and nitrogen can be observed under different environmental conditions. The effect of environmental factors on the stomatal conductance and the carboxylation rate affects the carbon isotope fractionation during photosynthesis. Changes in the environmental factors such as temperature and salt concentration affect the nitrogen isotope fractionation during the N cycle processes; however, the mechanism of variation in the nitrogen isotope fractionation has not been studied as much as that in the carbon isotope fractionation. Isotope fractionation factors of carbon and nitrogen could be the integrated factors for interpreting the effects of the environmental factors on plants and soils.

• Journal of Microbiology and Biotechnology
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• v.15 no.5
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• pp.1120-1124
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• 2005

Pseudomonas putida KCTC 1639 was newly identified as a potential producer of biodegradable medium chain length polyhydroxyalkanoates. It exhibited a carbon assimilation pattern quite different from other known P. putida strains, but a more similar pattern with P. oleovorans, which assimilates the carbon sources mainly through ${\beta}$-oxidation rather than the fatty acid biosynthesis pathway. The PHA synthesis gene cluster from P. putida KCTC1639 was composed of two gene loci; the PHA synthase gene locus and granule-associated gene locus, which were cloned and deposited in the GenBank under accession numbers AY286491 and AY750858 as a new nucleotide sequence, respectively. The molecular structure and amino acid homology of the new gene cluster were compared with those from Pseudomonas species, including other P. putida strains and P. oleovorans, and a higher than $90\%$ homology was observed.

• Mycobiology
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• v.41 no.3
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• pp.139-144
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• 2013

Makgeolli is a traditional cloudy-white Korean rice wine with an alcohol content of 6~7%. The present study investigated the morphological characteristics, carbon-utilizing ability, fatty acid composition, alcohol resistance, glucose tolerance, and flocculence of Saccharomyces cerevisiae Y98-5 and Pichia anomala Y197-13, non-S. cerevisiae isolated from Nuruk, which is used in brewing Makgeolli. Similar morphological characteristics were observed for both isolated wild yeast strains; and the carbon source assimilation of Y197-13 differed from that of other P. anomala strains. Strain Y197-13 was negative for D-trehalose, mannitol, arbutin, I-erythritol, and succinic acid. The major cellular fatty acids of strain Y197-13 included C18:2n6c (33.94%), C18:1n9c (26.97%) and C16:0 (20.57%). Strain Y197-13 was Crabtree-negative, with 60% cell viability at 12% (v/v) ethanol. The flocculation level of strain Y197-13 was 8.38%, resulting in its classification as a non-flocculent yeast.

• Korean Journal of Remote Sensing
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• v.29 no.3
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• pp.275-291
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• 2013

Monitoring the global Gross Primary Pproduction (GPP) is relevant to understanding the global carbon cycle and evaluating the effects of interannual climate variation on food and fiber production. GPP, the flux of carbon into ecosystems via photosynthetic assimilation, is an important variable in the global carbon cycle and a key process in land surface-atmosphere interactions. The Moderate-resolution Imaging Spectroradiometer (MODIS) is one of the primary global monitoring sensors. MODIS GPP has some of the problems that have been proven in several studies. Therefore this study was to solve the regional mismatch that occurs when using the MODIS GPP global product over Korea. To solve this problem, we estimated each of the GPP component variables separately to improve the GPP estimates. We compared our GPP estimates with validation GPP data to assess their accuracy. For all sites, the correlation was close with high significance ($R^2=0.8164$, $RMSE=0.6126g{\cdot}C{\cdot}m^{-2}{\cdot}d^{-1}$, $bias=-0.0271g{\cdot}C{\cdot}m^{-2}{\cdot}d^{-1}$). We also compared our results to those of other models. The component variables tended to be either over- or under-estimated when compared to those in other studies over the Korean peninsula, although the estimated GPP was better. The results of this study will likely improve carbon cycle modeling by capturing finer patterns with an integrated method of remote sensing.

• Journal of Korean Society for Atmospheric Environment
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• v.17 no.6
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• pp.451-461
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• 2001

Backward trajectories were calculated from five urban areas in Korea in 1999 in order to assess the effects of long-range transport on the air quality variations on an annual basis. The five areas selected were Seoul, Mokpo, Cheju, Pohang, and Kangnung, which are evenly distributed along the shoreline in Korea. Meteorological fields used in the work were prepared by the Korea Meteorological Administration using the RDAPS(Regional Data Assimilation and Prediction System) with grid spacing of 40 km and 12-h intervals(0000 and 1200 UTC). Upwind regions around the Korean Peninsula were divided into five sectors including the region to the northeast(I), northern China (II), southern China(III), the northwestern Pacific(IV), and Japan(V). The influence of air flow from these sectors on the variations of carbon monoxide concentrations in the selected areas was investigated. The results showed that the influences of Sectors II and III were persistent although some influences of adjacent sectors were observed according to the location of the areas. In general, the concentration of carbon monoxide tended to go up under the influence of Sectors II and III but tended to go down under the influence of Sector I. However, the influences of other sectors were rather mixed. The importance of the long-range transport was examined when the whole country was uniformly influenced by Sectors II and III with strong synoptic winds. The effects of long-range transport were large in Mokpo and Cheju, close to Sectors II and III, where the local emissions were considered small. The effects of local emissions were significant in Pohang and Seoul; such effect was more distinct in Pohang located farther from Sectors II and III.

• Journal of Microbiology and Biotechnology
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• v.16 no.7
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• pp.1068-1077
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• 2006

Pseudomonas sp. PhCN strain, which has the potential to utilize phenol and cyanide as a sole carbon and nitrogen source, was isolated. A comparison of the effect of cyanide on phenol degradation and vice versa by strain PhCN showed that the degradation time was significantly delayed by an increase in either phenol or cyanide concentration, and the greatest activities were obtained in basal medium containing a low concentration of cyanide and phenol. This strain contained two plasmids of approximately 120 kb (pPhCN-1) and 110 kb (pPhCN-2). Plasmid curing experiments produced a plasmid-free strain as well as strains containing either the 120- or the 110 kb plasmid. The strains were tested for their ability to utilize phenol and KCN. The results demonstrated that the ability to utilize phenol was encoded by the 120 kb plasmid, whereas the ability to utilize cyanide appeared to be encoded by the chromosome.

• Journal of Microbiology and Biotechnology
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• v.2 no.4
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• pp.273-277
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• 1992

Treatment of poultry feces with Tolura sp. CH-30 produced a material that was significantly deodorized and showed a promotive effect on plant growth. Tolura sp. CH-30 grew on the poultry feces, deodorizing the feces by assimilation of volatile fatty acids, which are the source of the offensive odor, as a carbon source. Significant degradation of uric acid also occurred. In the treatment of feces with Tolura sp. CH-30, it was possible to deodorize feces in a short time, but reduction in the amount of urate-N was not enough. Urate-N inhibited plant growth due to an excessive nitrogen content produced as a result of rapid decomposition. Therefore, we propose a recycle-treatment plan using poultry feces treated with Tolura sp. CH-30. After the recycle-treatment, the amount of urate-N contained in the recycle-treated poultry feces was small and the recycle-treated poultry feces showed a promotive effect on plant growth when it was added at a nitrogen content of 1.6 g/600 g soil/pot.

• KSBB Journal
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• v.15 no.5
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• pp.474-481
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• 2000

The effects of growth substrates such as toluene and phenol on cometabolic biodegradation of trichloroethylene (TCE) by Burkholderia cepacia G4 were investigated. The dual effects of primary substrate on TCE biodegradation, stimulatory effects of toluene and phenol at low concentrations (0.5∼2 ppm & 0.1∼0.5 ppm, respectively) and a competitive inhibition at high concentration, were observed in batch experiments. These stimulatory effects of toluene and phenol were found to be due to the increments in the amount of reducing power like NADH which could be generated during the assimilation of toluene and phenol as the carbon and energy source. The efficiency of TCE biodegradation in trickling biofilm reactor (TBR) could be also enhanced up to the TCE removal efficiency of 58.1% by the supply of appropriate amounts of phenol (0.94∼4.7 ppm).

• Journal of Species Research
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• v.13 no.1
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• pp.105-110
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• 2024

The purpose of this study was to isolate and identify wild yeasts from soil samples collected in Seoul and Daejeon, Republic of Korea. To identify wild yeast strains, pairwise sequence comparisons of D1/D2 region of the 26S rRNA gene sequence were done using Basic Local Alignment Search Tool (BLAST). The cell morphologies were observed by phase contrast microscope and carbon source assimilation test were done using API 20C AUX kit. Among the 13 isolated strains, 11 strains were previously reported, but two strains have never been reported from Republic of Korea. The 13 strains were assigned to the phylum Basidiomycota. The two unrecorded yeast strains B2UV-201 and DJ1-5-B-10C belong to the genera Rhodotorula and Rhodosporidiobolus, respectively. The two unrecorded yeast strains are oval shaped and polar budding cells. This research focuses on the morphological and biochemical properties of the two unreported yeast species that have not officially been reported in Korea.

• Journal of Species Research
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• v.13 no.3
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• pp.288-292
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• 2024

In the course of our survey of microbial diversity, a total of seven basidiomycetous yeast strains were isolated from flowers sampled across the four provinces of the Republic of Korea, of which two strains were identified as an unrecorded species. Comparative analysis was conducted for identification of strains using the D1/D2 region of the large subunit(LSU) rRNA gene sequences, observation of cell morphologies, and carbon assimilation tests. Seven strains were classified within the phylum Basidiomycota. Two unrecorded strains, JRP1-10 (KACC 410703) and KC-1 (KACC 410704), were identified as Vishniacozyma pseudocarnescens, belonging to the family Bulleribasidiaceae, order Tremellales, class Tremellomycetes. Two strains had ellipsoidal-shaped and monopolar budding cells and smooth and cream-colored colonies after cultivation at 25℃ for 3 days. Here, we present the morphological and biochemical characteristics of the unrecorded yeast species, Vishniacozyma pseudocarnescens, in the Republic of Korea.