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http://dx.doi.org/10.3839/jabc.2008.041

Stable C and N Isotopes: A Tool to Interpret Interacting Environmental Stresses on Soil and Plant  

Yun, Seok-In (Program in Applied Life Chemistry, Department of Agricultural Biotechnology and Research Institute of Agriculture and life Sciences, Seoul National University)
Ro, Hee-Myong (Program in Applied Life Chemistry, Department of Agricultural Biotechnology and Research Institute of Agriculture and life Sciences, Seoul National University)
Publication Information
Journal of Applied Biological Chemistry / v.51, no.6, 2008 , pp. 262-271 More about this Journal
Abstract
Natural abundances of stable isotopes of nitrogen and carbon (${\delta}^{15}N$ and ${\delta}^{13}C$) are being widely used to study N and C cycle processes in plant and soil systems. Variations in ${\delta}^{15}N$ of the soil and the plant reflect the potentially variable isotope signature of the external N sources and the isotope fractionation during the N cycle process. $N_2$ fixation and N fertilizer supply the nitrogen, whose ${\delta}^{15}N$ is close to 0%o, whereas the compost as. an organic input generally provides the nitrogen enriched in $^{15}N$ compared to the atmospheric $N_2$. The isotope fractionation during the N cycle process decreases the ${\delta}^{15}N$ of the substrate and increases the ${\delta}^{15}N$ of the product. N transformations such as N mineralization, nitrification, denitrification, assimilation, and the $NH_3$ volatilization have a specific isotope fractionation factor (${\alpha}$) for each N process. Variation in the ${\delta}^{13}C$ of plants reflects the photosynthetic type of plant, which affects the isotope fractionation during photosynthesis. The ${\delta}^{13}C$ of C3 plant is significantly lower than, whereas the ${\delta}^{13}C$ of C4 plant is similar to that of the atmospheric $CO_2$. Variation in the isotope fractionation of carbon and nitrogen can be observed under different environmental conditions. The effect of environmental factors on the stomatal conductance and the carboxylation rate affects the carbon isotope fractionation during photosynthesis. Changes in the environmental factors such as temperature and salt concentration affect the nitrogen isotope fractionation during the N cycle processes; however, the mechanism of variation in the nitrogen isotope fractionation has not been studied as much as that in the carbon isotope fractionation. Isotope fractionation factors of carbon and nitrogen could be the integrated factors for interpreting the effects of the environmental factors on plants and soils.
Keywords
stable isotope; isotope fractionation; environmental stress;
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  • Reference
1 Choi WJ, Ro HM, and Chang SX (2005a) Carbon isotope composition of Phragmites australis in a constructed saline wetland. Aquat Bot 82, 27-38   DOI   ScienceOn
2 Choi WJ, Lee SM, Chang SX, and Ro HM (2005c) Variations of $\delta^{13}C$ and $\delta^{15}N$ in Pinus densiflora tree-rings and their relationship to environmental changes in Eastern Korea. Water Air Soil Poll 164, 173-187   DOI
3 Handley LL, Austin AT, Robinson D, Scrimgeour CM, Heaton THE, Raven JA, Schmidt S, and Stewart GR (1999) The 15N-natural abundance $(\delta^{15}N)$ of ecosystem samples reflects measures of water availability. Aust J Plant Physiol 26, 185-199   DOI   ScienceOn
4 Hoefs J (1997) In Stable Isotope Geochemistry. pp. 1-26, Springer. New York
5 Hubner H (1986) Isotope effects of nitrogen in the soil and biosphere. In Handbook of Environmental Isotope Geochemistry. vol. 2B. Fritz P, Fontes JC (eds), pp. 361- 425, Elsevier, Amsterdam
6 Ledgard SF (1989) Nutrition, moisture and rhizobial strain influence isotopic fractionation during $N_2$ fixation in pasture legumes. Soil Biol Biochem 21, 65-68   DOI   ScienceOn
7 O'Leary MH (1981) Carbon isotope fractionation in plants. Phytochemistry 20, 553-567   DOI   ScienceOn
8 Paneth P and O'Leary MH (1985) Carbon isotope effect on dehydration of bicarbonate ion catalyzed by carbonic anhydrase. Biochemistry 24, 5143-5147   DOI   ScienceOn
9 Steele KW, Bonish BM, Daniel RM, and O'Hara GW (1983) Effect of rhizobial strains and host plant on nitrogen isotopic fractionation in legumes. Plant Physiol 72, 1001-1004   DOI   ScienceOn
10 Wellman RP, Cook FD, and Krouse HR (1968) Nitrogen-15: microbial alteration of abundance. Science 161, 269-270   DOI   ScienceOn
11 Melander L and Saunders WH (1980) In Reaction Rates of Isotopic Molecules. Wiley, New York
12 Keeling CD, Mook WG, and Tans P (1979) Recent trends in the $^{13}C/^{12}C$ ratio of atmospheric carbon dioxide. Nature 277, 121-123   DOI
13 O'Leary MH (1984) Measurement of the isotope fractionation associated with diffusion of carbon dioxide in aqueous solution. J Phys Chem 88, 823-825   DOI
14 Adams TS and Sterner RW (2000) The effect of dietary nitrogen content on trophic level $^{15}N$ enrichment. Limnol Oceanogr 45, 601-607
15 Bigeleisen J (1965) Chemistry of isotopes. Science 147, 463-471   DOI   ScienceOn
16 Melander L (1960) In Isotope Effects on Reaction Rates. Ronald Press, New York
17 Hersterberg R and Siegenthaler U (1991) Production and stable isotope composition of $CO_2$ in a soil near Bern, Switzerland. Tellus 43B, 197-205
18 Nadelhoffer JJ and Fry B (1994) Nitrogen isotope studies in forest ecosystems. In Stable isotopes in ecology and environmental science. Lajtha K, Michener R (eds), pp. 23-44, Blackwell Scientific Publications, Boston
19 Urey HC (1947) The thermodynamic properties of isotopic substances. J Chem Soc, 562-581   DOI
20 Farquhar GD (1983) On the nature of carbon isotope discrimination in C4 species. Aust J Plant Physiol 19, 205-226
21 Marlier JF and O'Leary MH (1984) Carbon kinetic isotope effects on the hydration of carbon dioxide and the dehydration of bicarbonate ion. J Am Chem Soc 106, 5054-5057   DOI   ScienceOn
22 Choi WJ, Han GH, Ro HM, Yoo SH, and Lee SM (2002) Evaluation of nitrate contamination sources of unconfined groundwater in the North Han River basin of Korea using nitrogen isotope ratios. Geosci J 6, 47-55   DOI   ScienceOn
23 Craig H (1957) Isotopic standards for carbon and oxygen and correction factors for mass-spectrometric analysis of carbon dioxide. Geochim Cosmochim Ac 12, 133-149   DOI   ScienceOn
24 Kerley SJ and Jarvis SC (1996) Preliminary studies of the impact of excreted N on cycling and uptake of N in pasture systems using natural abundance stable isotope discrimination. Plant Soil 178, 287-294   DOI
25 Letolle R (1980) Nitrogen-15 in the natural environment. In Handbook of Environmenal Isotope Geochemistry, vol. 1A. Fritz P, Fontes JC (eds), pp. 407-403, Elesevier, Amsterdam
26 Yeo AR (1983) Salinity resistance: physiologies and prices. Physiol Plantarum 58, 214-222   DOI
27 Choi WJ, Chang SX, Allen HL, Kelting DL, and Ro HM (2005b) Irrigation and fertilization effects on foliar and soil carbon and nitrogen isotope ratios in a loblolly pine stand. Forest Ecol Manag 213, 90-101   DOI   ScienceOn
28 Karamanos RE and Rennie DA (1978) N isotope fractionation during exchange reactions with soil clay. Can J Soil Sci 60, 337-344   DOI
29 Criss RE (1999) In Principles of Stable Isotope Distribution. pp. 15-83, Oxford University Press. New York
30 Hogberg P, Hogbom L, Schinkel H, Högberg M, Johannisson C, and Wallmark H (1996) $^{15}N$ abundance of surface soils, roots and mycorrhizas in profiles of European forest soils. Oecologia 108, 207-214   DOI
31 Robinson D, Handley LL, and Scrimgeour CM (1998) A theory for $^{15}N/^{14}N$ fractionation in nitrate-grown vascular plants. Planta 205, 397-406   DOI
32 Choi WJ and Ro HM (2003) Differences in isotopic fractionation of nitrogen in water-saturated and unsaturated soils. Soil Biol Biochem 35, 483-486   DOI   ScienceOn
33 Bigeleisen J and Wolfsberg M (1958) Theoretical and experimental aspects of isotope effects in chemical kinetics. Adv Chem Phys 1, 15-76
34 Mook WG, Bommerson JC, and Staverman WH (1974) Carbon isotope fractionation between dissolved bicarbonate and gaseous carbon dioxide. Earth Planet Sc Lett 22, 169-176   DOI   ScienceOn
35 Rundel PW, Ehleringer JR, and Nagy KA (1989) In Stable Isotopes in Ecological Research. Springer-Verlag, New York
36 Evans RD, Bloom AJ, Sukrapanna SS, and Ehleringer JR (1996) Nitrogen isotope composition of tomato (Lycopericon esculentum Mill. cv. T-5) grown under ammonium or nitrate nutrition. Plant Cell Environ 19, 121-137
37 Roeske CA and O'Leary MH (1984) Carbon isotope effects on the enzyme-catalyzed carboxylation of ribulose bisphosphate. Biochemistry 23, 6275-6284   DOI
38 Junk G and Svec H (1958) The absolute abundance of the nitrogen isotopes in the atmosphere and compressed gas from various sources. Geochim Cosmochim Ac 14, 234-243   DOI   ScienceOn
39 Troughton JH (1979) $\delta^{13}C$ as an indicator of carboxylation reactions. Encycl Plant Physiol, New Ser 6, 140-149
40 Yoshida N, Morimoto H, Harane M, Koike I, Matsuo S, Wada E, Saino T, and Hattori A (1989) Nitrification rates and $^{15}N$ abundances of $N_2O$ and $NO_3$ - in the western North Pacific. Nature 342, 895-897   DOI
41 O'Leary MH, Rife JE, and Slater JD (1981) Kinetic and isotope effect studies of maize phosphoenolpyruvate carboxylase. Biochemistry 20, 7308-7314   DOI
42 Shearer GB and Kohl DH (1986) $N_2$ fixation in field settings: estimations based on natural $^{15}N$ abundance. Aust J Plant Physiol 13, 699-757
43 Hogberg P (1997) Tansley review no. 95: $^{15}N$ natural abundance in soil-plant systems. New Phytol 137, 179-203   DOI   ScienceOn
44 Henderson SA, von Caemmerer S, and Farquhar GD (1992) Short-term measurements of carbon isotope discrimination in several C4 species. Aust J Plant Physiol 19, 263-285   DOI
45 Johannisson C and Hogberg P (1994) 1$^{15}N$ abundances of soils and plants along an experimentally induced forest nitrogen supply gradient. Oecologia 97, 322-325   DOI
46 O'Leary MH and Yapp CJ (1978) Equilibrium isotope effect on a decarboxylation reaction. Biochem Bioph Res Co 80, 155-160   DOI   ScienceOn
47 Bergersen FJ, Turner GL, Amarger N, Mariotti F, and Mariotti A (1986) Strain of Rhizobium lupinus determines the natural abundance of $^{15}N$ in root nodules of Lupinus spp. Soil Biol Biochem 18, 97-101   DOI   ScienceOn
48 Yoshida N (1988) $^{15}N$ depleted $N_2O$ as a product of nitrification. Nature 335, 528-529   DOI
49 Bryan BA, Shearer GB, Skeeters JL, and Kohl DH (1983) Variable expression of the nitrogen isotope effect associated with denitrification of nitrite. J Biol Chem 258, 8613-8617
50 O'Leary MH (1993) Biochemical basis of carbon isotope fractionation. In Stable Isotopes and Plant Carbon-water Relations. Ehleringer JR, Hall AE, Farquhar GD (eds), pp. 19-26, Academic press. London
51 Dijkstra P, LaViolette CM, Coyle JS, Doucett RR, Schwartz E, Hart SC, and Hungate BA (2008) $^{15}N$ enrichment as an integrator of the effects of C and N on microbial metabolism and ecosystem function. Ecol Lett 11, 389-397   DOI   ScienceOn
52 Zmora-Nahum S, Hadar Y, and Chen Y (2007) Physicochemical properties of commercial composts varying in their source materials and country of origon. Soil Biol Biochem 39, 1263-1276   DOI   ScienceOn
53 Delwiche CC and Steyn PL (1970) Nitrogen isotope fractionation in soils and microbial reactions. Environ Sci Technol 4, 925-935
54 Kohl DH and Shearer GB (1995) Using variations in natural $^{15}N$ abundance to investigate N cycle processes. In Stable Isotopes in the Biosphere. Wada E, Yoneyama T, Minagawa M, Ando T, Fry BD (eds), pp. 103-130, Kyoto University Press. Kyoto
55 Mariotti A, Germon GC, Hubert P, Kaiser P, Letolle R, Tardieux A, and Tardieux P (1981) Experimental determination of nitrogen kinetic isotope fractionation: some principles; illustrations for the denitrification and nitrification processes. Plant Soil 62, 413-430   DOI
56 Rayleigh JWS (1896) Theoretical considerations respecting the separation of gases by diffusion and similar processes. Philos Mag 42, 493   DOI
57 Robinson D, Handley LL, Scrimgeour CM, Gordon DC, Forster BP, and Ellis RP (2000) Using stable isotope natural abundances $(\delta^{15}N\;and\;\delta^{13}C) $to integrate the stress responses of wild barley (Hordeum spontaneum C. Koch.) genotypes. J Exp Bot 51, 41-50   DOI   ScienceOn
58 Yun SI, Ro HM, Choi WJ, and Chang SX (2006) Interactive effects of N fertilizer source and timing of fertilization leave specific N isotopic signatures in Chinese cabbage and soil. Soil Biol Biochem 38, 1682-1689   DOI   ScienceOn
59 Farquhar GD, O'Leary MH, and Berry JA (1982) On the relationship between carbon isotope discrimination and the inter-cellular carbon-dioxide concentration in leaves. Aust J Plant Physiol 9,121-137   DOI
60 Mariotti A, Germon GC, Leclerc A, Catroux G, and Letolle R (1982) Experimental determination of kinetic isotope fractionation of nitrogen isotopes during denitrification. In Stable isotopes. Schmidt HL, Förstel H, Heinzinger K (eds), Elsevier, New York
61 Farquhar GD, Ehleringer JR, and Hubick KT (1989) Carbon isotope discrimination and photosynthesis. Annu Rev Plant Phys 40, 503-537   DOI
62 O'Leary MH (1988) Carbon isotopes in photosynthesis. Bio-Science 38, 328-336   DOI   ScienceOn
63 Vogel JC (1980) Fractionation of the carbon isotopes during photosynthesis. Sitzungsber Heidelb Akad Wiss 3, 111-135