• Title/Summary/Keyword: Biological specimen

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Design of a specimen holder for living cell in the soft X-ray microscopy (연 X-선 현미경을 위한 생체시료 고정장치 설계)

  • 권영만;김경우;윤권하
    • Proceedings of the Korean Society of Precision Engineering Conference
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    • 2003.06a
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    • pp.705-708
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    • 2003
  • To observe a hydrated biological specimen, an environmental chamber was necessary to keep the specimen in a wet state under vacuum surroundings. The specimen holder is as follows designed consequently. The specimen holder consisted of two Si wafers, the centers of which were Si$_3$N$_4$(100nm thickness) windows of a 0.3mm square. The windows were made by a photo-lithographic method. The transmission of a window at 400eV is about 70%. A hydrated biological specimen was put between the two windows. When the chamber was closed, two wafers were contact at the metal mesh by the pressure of O-rings, and the specimen holder moved by the three micrometers.

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Neotypification of Veronica pusanensis (Scrophulariaceae)

  • Jang, Hyun-Do;Noh, Tae-Kwon
    • Journal of Species Research
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    • v.9 no.4
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    • pp.375-376
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    • 2020
  • A type specimen is the specimen originally used to name a new species; thus, it is one of the most significant materials for taxonomic study. In our study on the inventory and management of endemic species in Korea, we checked the type materials for Pseudolysimachion pusanensis (Y. Lee) Y. Lee, combination name Veronica pusanensis Y. Lee, recorded as deposited at the herbaria of the Ewha Womans University and the National Institute of Biological Resources, and failed to find any specimens. Thus, we concluded that all type specimens of V. pusanensis have since been misplaced. According to articles 9.11 and 9.13 of the International Code of Nomenclature for algae, fungi, and plants, it is necessary to select a neotype if the holotype is missing and no other original material exists. Therefore, we designate the neotype maintained in the herbarium of the National Institute of Biological Resources of the Republic of Korea.

Determination of Diversity, Distribution and Host Specificity of Korean Laccaria Using Four Approaches

  • Cho, Hae Jin;Park, Ki Hyeong;Park, Myung Soo;Cho, Yoonhee;Kim, Ji Seon;Seo, Chang Wan;Oh, Seung-Yoon;Lim, Young Woon
    • Mycobiology
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    • v.49 no.5
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    • pp.461-468
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    • 2021
  • The genus Laccaria (Hydnangiaceae, Agaricales) plays an important role in forest ecosystems as an ectomycorrhizal fungus, contributing to nutrient cycles through symbiosis with many types of trees. Though understanding Laccaria diversity and distribution patterns, as well as its association with host plants, is fundamental to constructing a balanced plant diversity and conducting effective forest management, previous studies have not been effective in accurately investigating, as they relied heavily on specimen collection alone. To investigate the true diversity and distribution pattern of Laccaria species and determine their host types, we used four different approaches: specimen-based analysis, open database search (ODS), NGS analysis, and species-specific PCR (SSP). As a result, 14 Laccaria species have been confirmed in Korea. Results regarding the species distribution pattern were different between specimen-based analysis and SSP. However, when both were integrated, the exact distribution pattern of each Laccaria species was determined. In addition, the SSP revealed that many Laccaria species have a wide range of host types. This study shows that using these four different approaches is useful in determining the diversity, distribution, and host of ECM fungi. Furthermore, results obtained for Laccaria will serve as a baseline to help understand the role of ECM fungi in forest management in response to climate change.

New Record of the Stone Cockscomb Alectrias alectrolophus (Perciformes: Stichaeidae) from off Gangneung City, East Sea, Korea (Alectrias속 어류의 1 미기록종, Alectrias alectrolophus)

  • Cho, Hyun-Geun;Kweon, Seon-Man
    • Korean Journal of Ichthyology
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    • v.26 no.4
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    • pp.331-335
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    • 2014
  • A single specimen of the stone cockscomb, Alectrias alectrolophus (Pallas, 1811) was collected from off Gangneung-si, East Sea, Korea. The present Korean specimen is characterized in having a dermal crest on dorsal median line of head, LXIII dorsal fin rays, I, 44 anal fin rays, 68 vertebrae, slender and flexible dorsal spines in its anterior parts, and scales on the posterior portion of body, and fused gill membranes forming a free fold across the isthmus. We report A. alectrolophus based on a single specimen collected from the Korean water as the first record from Korea.

A new record of a sea star, Henricia aspera Fisher, 1906 (Asteroidea: Spinulosida: Echinasteridae) from Jeju Island, Korea

  • Michael Dadole Ubagan;Sook Shin
    • Journal of Species Research
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    • v.12 no.2
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    • pp.154-157
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    • 2023
  • A specimen of Henricia was collected from the adjacent waters of Moseulpo, Jeju Island, Korea, using fishing nets. The specimen was identified as Henricia aspera Fisher, 1906, which belongs to the family Echinasteridae of the order Spinulosida. This species can be distinguished from other Henricia species by its broad arms (R/r=4.1), swollen arm base, three to seven short abactinal spines, and close-meshed formation of the actinal skeleton. This study has newly recorded H. aspera inhabiting the Korean fauna, bringing the total number of known Henricia species in Korea to 16. This study provides a description of the morphological characteristics of H. aspera with photographs of each part. Additionally, a table is presented that compares the morphological characteristics of H. aspera with closely related Henricia species.

Study on Surface Damage of Specimen for Transmission Electron Microscopy(TEM) Using Focused Ion Beam(FIB) (집속 이온빔을 이용한 투과 전자 현미경 시편의 표면 영향에 관한 연구)

  • Kim, Dong-Sik
    • 전자공학회논문지 IE
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    • v.47 no.2
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    • pp.8-12
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    • 2010
  • TEM is a powerful tool for semiconductor material analyses in structure or biological sample in micro structure. TEM observation need to make to coincide specimens for special purpose. in this paper, we have experimented for minimum surface damage on bulk wafer and patterned specimen by various conditions such as accelerating energy, depth of ion beam, ion milling types, and etc. in various specimen preparation methods by FIB (Focus Ion Beam). The optimal qualified specimens are contain low mounts of surface damage(about 5 nm) on patterned specimen.

Specimen of Storage and Analysis for Genomic Epidemiology (유전체 역학 연구를 위한 시료의 보관과 분석)

  • Lee, Kwan-Hee;Hong, Yun-Chul
    • Journal of Preventive Medicine and Public Health
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    • v.36 no.3
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    • pp.209-212
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    • 2003
  • Because of advances of technologies in the field of genmic epidemiology in the recent years, specimen collection, storage and analysis became an essential part of research methodologies. DNA is now being used in epidemiologic studies to evaluate genetic risk factors and specimens other than the fresh whole blood can De used for PCR. Therefore, All nucleated cells, such as buccal swabs and urine specimens, are suitable for DNA analysis. For an unlimited source of genomic DNA, EBV transformation of lymphocytes can be used for immortalization. However, the type of specimen collected in genomic epidemiologic studies will depend on the study where the epidemiologist play a leading role for the design. We also briefly described various finds of analysis for SNP that is an essential part of the genomic epidemiology.

Mechanical Properties of Apple and Pear (사과 및 배의 기계적 특성)

  • 김만수;정현모;박종민;이영희
    • Journal of Biosystems Engineering
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    • v.24 no.3
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    • pp.243-252
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    • 1999
  • The damage caused in the processes and distributions after harvesting the fruits and vegetables is attributed to the mechanical factors such as compressive and impact forces. Compression tests of biological materials provide an objective method for determining the apparent modulus of elasticity and mechanical properties which are significant in quality evaluation and control, and them maximum allowable compressive forces for minimizing mechanical damage. This study was performed to determine the mechanical properties of apple and pear, and to investigate effect of specimen shapes on the mechanical properties of them. A computer program was developed for measuring the mechanical properties and analyzing the data obtained from the measurement. Compression tests on the sample were performed with then replications at each treatment and at 25 mm/min loading rate. Mechanical properties of the apple was generally shown the higher value than those of the pear, and it was though that data obtained form the cylindrical specimen removed from the sample was more reliable than from the specimen cut in half.

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Newly recorded sea star Henricia hayashii(Asteroidea: Spinulosida: Echinasteridae) in the East Sea, Korea

  • Ubagan, Michael Dadole;Shin, Sook
    • Korean Journal of Environmental Biology
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    • v.39 no.3
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    • pp.289-292
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    • 2021
  • Henricia specimen was collected from the East Sea of Korea using fishing nets. The specimen was identified as Henricia hayashii (Djakonov 1961), belonging to the family Echinasteridae of the order Spinulosida. This species can be distinguished from other Henricia species by slender arms (R/r=7.4), constricted arm base, six to thirty-five slender spinelets, open-meshed, reticulated abactinal skeleton comprising semi-triangular, rod-like form, and small ossicles present inside the papular areas. This species superficially resembles H. reniossa in terms of its body size but differs in the shape and arrangement of the abactinal and actinal plates. To date, two genera of Echinasteridae, Aleutihenricia and Henricia, including a total of 14 species, have been reported in Korea. Herein, the morphological characteristics of H. hayashii are described, and photographs are provided.

New record of a sea star of genus Henricia (Asteroidea: Spinulosida: Echinasteridae) from Jeju Island, Korea

  • Ubagan, Michael Dadole;Shin, Sook
    • Korean Journal of Environmental Biology
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    • v.37 no.1
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    • pp.68-71
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    • 2019
  • An asteroid specimen that belongs to the genus Henricia was collected from the waters near Ongpo harbor, Jeju Island using fishing net on 24 January 2017. The specimen was identified as Henricia anomala Hayashi, 1973, which belongs to the family Echinasteridae and order Spinulosida. Henricia anomala was first described by Hayashi, 1973, who captured it from Sagami Bay at a depth of 110-116 m. This species can be distinguished from other Henricia species by short arms (R/r=4), abactinal spines lining the abactinal plates and bearing about two to five spinelets, closely meshed abactinal skeleton, composed of small rod-like and subtriangular plates, a narrow papular area containing one or two papulae, and adambulacral armature composed of five to seven bluntly pointed spinelets. This is the first report of Henricia anomala in Korea.