Determination of Diversity, Distribution and Host Specificity of Korean Laccaria Using Four Approaches |
Cho, Hae Jin
(School of Biological Sciences and Institute of Microbiology, Seoul National University)
Park, Ki Hyeong (School of Biological Sciences and Institute of Microbiology, Seoul National University) Park, Myung Soo (School of Biological Sciences and Institute of Microbiology, Seoul National University) Cho, Yoonhee (School of Biological Sciences and Institute of Microbiology, Seoul National University) Kim, Ji Seon (School of Biological Sciences and Institute of Microbiology, Seoul National University) Seo, Chang Wan (School of Biological Sciences and Institute of Microbiology, Seoul National University) Oh, Seung-Yoon (Department of Biology and Chemistry, Changwon National University) Lim, Young Woon (School of Biological Sciences and Institute of Microbiology, Seoul National University) |
1 | Porter TM, Skillman JE, Moncalvo JM. Fruiting body and soil rDNA sampling detects complementary assemblage of Agaricomycotina (Basidiomycota, Fungi) in a hemlock-dominated forest plot in southern Ontario. Mol Ecol. 2008; 17(13):3037-3050. DOI |
2 | Wilson AW, Hosaka K, Perry BA, et al. Laccaria (Agaricomycetes, Basidiomycota) from Tibet (Xizang Autonomous Region, China). Mycoscience. 2013;54(6):406-419. DOI |
3 | Heijden MGA, Martin FM, Selosse M-A, et al. Mycorrhizal ecology and evolution: the past, the present, and the future. New Phytol. 2015;205(4): 1406-1423. DOI |
4 | Soto-Medina E, Bolano-Rojas AC. Hongos macroscopicos en un bosque de niebla intervenido, vereda Chicoral, Valle del Cauca, Colombia. Biota Colombiana. 2013;14(2):1-12. |
5 | Berkeley MJ, Broome CE. XLIII-notices of British fungi. J Nat Hist. 1883;12(72):370-374. |
6 | Wilson AW, Hosaka K, Mueller GM. Evolution of ectomycorrhizas as a driver of diversification and biogeographic patterns in the model mycorrhizal mushroom genus Laccaria. New Phytol. 2017; 213(4):1862-1873. DOI |
7 | Martin F, Aerts A, Ahren D, et al. The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis. Nature. 2008;452(7183):88-92. DOI |
8 | Mueller GM. Systematics of Laccaria (Agaricales) in the continental United States and Canada, with discussions on extralimital taxa and descriptions of extant types. Fieldiana Bot New Ser. 1992;30:158. |
9 | Bidartondo MI, Gardes M. Fungal diversity in molecular terms: profiling, identification, and quantification in the environment. Mycol Ser. 2005;23:215. DOI |
10 | Cho HJ, Lee H, Park MS, et al. Two new species of Laccaria (Agaricales, Basidiomycota) from Korea. Mycobiology. 2020;48(4):288-295. DOI |
11 | Schmidt PA, Balint M, Greshake B, et al. Illumina metabarcoding of a soil fungal community. Soil Biol Biochem. 2013;65:128-132. DOI |
12 | Jonsson L, Anders D, Tor-Erik B. Spatiotemporal distribution of an ectomycorrhizal community in an oligotrophic Swedish Picea abies forest subjected to experimental nitrogen addition: above- and below-ground views. For Ecol Manage. 2000; 132(2-3):143-156. DOI |
13 | Tedersoo L, Nilsson RH, Abarenkov K, et al. 454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases. New Phytol. 2010;188(1):291-301. DOI |
14 | Stakheev AA, Ryazantsev DY, Gagkaeva TY, et al. PCR detection of Fusarium fungi with similar profiles of the produced mycotoxins. Food Control. 2011;22(3-4):462-468. DOI |
15 | Tedersoo L, Suvi T, Larsson E, et al. Diversity and community structure of ectomycorrhizal fungi in a wooded meadow. Mycol Res. 2006;110(6):734-748. DOI |
16 | Guo Y, Li X, Zhao Z, et al. Prediction of the potential geographic distribution of the ectomycorrhizal mushroom Tricholoma matsutake under multiple climate change scenarios. Sci Rep. 2017;7: 46221. DOI |
17 | Ramos V, Morais J, Vasconcelos VM. A curated database of cyanobacterial strains relevant for modern taxonomy and phylogenetic studies. Sci Data. 2017;4(1):1-8. |
18 | Schmit JP, Lodge DJ. Classical methods and modern analysis for studying fungal diversity. Mycol Ser. 2005;23:193. DOI |
19 | Nilsson RH, Anslan S, Bahram M, et al. Mycobiome diversity: high-throughput sequencing and identification of fungi. Nat Rev Microbiol. 2019;17(2):95-109. DOI |
20 | Yaguchi T, Imanishi Y, Matsuzawa T, et al. Method for identifying heat-resistant fungi of the genus Neosartorya. J Food Prot. 2012;75(10): 1806-1813. DOI |
21 | Choung Y, Lee J, Cho S, et al. Review on the succession process of Pinus densiflora forests in South Korea: progressive and disturbance-driven succession. J Ecol Environ. 2020;44(1):1-17. DOI |
22 | Dahlberg A. Community ecology of ectomycorrhizal fungi: an advancing interdisciplinary field. New Phytol. 2001;150(3):555-562. DOI |
23 | Jang Y, Jang S, Min M, et al. Comparison of the diversity of basidiomycetes from dead wood of the Manchurian fir (Abies holophylla) as evaluated by fruiting body collection, mycelial isolation, and 454 sequencing. Microb Ecol. 2015;70(3):634-645. DOI |
24 | Torres-Calzada C, Tapia-Tussell R, Quijano-Ramayo A, et al. A species-specific polymerase chain reaction assay for rapid and sensitive detection of Colletotrichum capsici. Mol Biotechnol. 2011;49(1):48-55. DOI |
25 | Bahram M, Koljalg U, Courty PE, et al. The distance decay of similarity in communities of ectomycorrhizal fungi in different ecosystems and scales. J Ecol. 2013;101(5):1335-1344. DOI |
26 | Sota T, Kagata H, Ando Y, et al. 2014. Metagenomic approach yields insights into fungal diversity and functioning. In: Sota T, Kagata H, Ando Y, Utsumi S, Osono T, editors. Species diversity and community structure. Tokyo: Springer. p. 1-23. |
27 | Park MS, Oh SY, Fong JJ, et al. The diversity and ecological roles of Penicillium in intertidal zones. Sci Rep. 2019;9(1):1-11. DOI |
28 | Sanders IR. Plant and arbuscular mycorrhizal fungal diversity-are we looking at the relevant levels of diversity and are we using the right techniques? New Phytol. 2004;164(3):415-418. DOI |
29 | Singer R. 1986. The Agaricales in modern taxonomy. 4th ed. Koenigstein (Germany): Koeltz Scientific Books. p. 981. |
30 | Dahlberg A, Jonsson L, Nylund JE. Species diversity and distribution of biomass above and below ground among ectomycorrhizal fungi in an old-growth Norway spruce forest in south Sweden. Can J Bot. 1997;75(8):1323-1335. DOI |
31 | Buee M, Reich M, Murat C, et al. 454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity. New Phytol. 2009;184(2):449-456. DOI |
32 | Taberlet P, Coissac E, Pompanon F, et al. Towards next-generation biodiversity assessment using DNA metabarcoding. Mol Ecol. 2012;21(8): 2045-2050. DOI |
33 | Orgiazzi A, Dunbar MB, Panagos P, et al. Soil biodiversity and DNA barcodes: opportunities and challenges. Soil Biol Biochem. 2015;80:244-250. DOI |
34 | Vincenot L, Nara K, Sthultz C, et al. Extensive gene flow over Europe and possible speciation over Eurasia in the ectomycorrhizal basidiomycete Laccaria amethystina complex. Mol Ecol. 2012; 21(2):281-299. DOI |
35 | Mueller GM. The Swedish taxa of Laccaria (Tricholomataceae) with notes on their distribution. Nord J Bot. 1991;10(6):665-680. DOI |
36 | Wilson AW, May TW, Mueller GM. 2017. Biogeography of the ectomycorrhizal mushroom genus Laccaria. In: Tedersoo L, editor. Biogeography of mycorrhizal symbiosis. Ecological studies (analysis and synthesis). Vol. 230. Cham: Springer. p. 273-297. |
37 | Bastide PYDL, Piche Y, Kropp BR. Vegetative interactions among mycelia of Laccaria bicolor in pure culture and in symbiosis with Pinus banksiana. Can J Bot. 1995;73(11):1768-1779. DOI |
38 | Kohler A, Kuo A, Nagy LG, et al. Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists. Nat Genet. 2015;47(4):410-415. DOI |
39 | Lin Z, Xu S, Que Y, et al. Species-specific detection and identification of Fusarium species complex, the causal agent of sugarcane Pokkah Boeng in China. PloS One. 2014;9(8):e104195. DOI |
40 | Sheedy EM, Van de Wouw AP, Howlett BJ, et al. Multigene sequence data reveal morphologically cryptic phylogenetic species within the genus Laccaria in southern Australia. Mycologia. 2013; 105(3):547-563. DOI |
41 | Liu Y, Wang XY, Gao ZT, et al. Detection of Ophiocordyceps sinensis and its common adulterates using species-specific primers. Front Microbiol. 2017;8:1179. DOI |
42 | White TJ, Bruns T, Lee SJWT, et al. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR Protoc. 1990;18(1): 315-322. |
43 | Gardes M, Bruns TD. Community structure of ectomycorrhizal fungi in a Pinus muricata forest: above-and below-ground views. Can J Bot. 1996; 74(10):1572-1583. DOI |
44 | Baptista P, Martins A, Tavares RM, et al. Diversity and fruiting pattern of macrofungi associated with chestnut (Castanea sativa) in the Tras-os-Montes region (Northeast Portugal). Fungal Ecol. 2010; 3(1):9-19. DOI |
45 | Cho HJ, Park MS, Lee H, et al. A systematic revision of the ectomycorrhizal genus Laccaria from Korea. Mycologia. 2018;110(5):948-961. DOI |
46 | Jayasiri SC, Hyde KD, Ariyawansa HA, et al. The Faces of Fungi database: fungal names linked with morphology, phylogeny and human impacts. Fungal Diver. 2015;74(1):3-18. DOI |
47 | Roy M, Schimann H, Braga-Neto R, et al. Diversity and distribution of ectomycorrhizal fungi from Amazonian lowland white-sand forests in Brazil and French Guiana. Biotropica. 2016;48(1): 90-100. DOI |
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