• Title/Summary/Keyword: Bio-analysis

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Super Resolution Performance Analysis of GAN according to Feature Extractor (특징 추출기에 따른 SRGAN의 초해상 성능 분석)

  • Park, Sung-Wook;Kim, Jun-Yeong;Park, Jun;Jung, Se-Hoon;Sim, Chun-Bo
    • Proceedings of the Korea Information Processing Society Conference
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    • 2022.11a
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    • pp.501-503
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    • 2022
  • 초해상이란 해상도가 낮은 영상을 해상도가 높은 영상으로 합성하는 기술이다. 딥러닝은 영상의 해상도를 높이는 초해상 기술에도 응용되며 실현은 2아4년에 발표된 SRCNN(Super Resolution Convolutional Neural Network) 모델로부터 시작됐다. 이후 오토인코더 (Autoencoders) 구조로는 SRCAE(Super Resolution Convolutional Autoencoders), 합성된 영상을 실제 영상과 통계적으로 구분되지 않도록 강제하는 GAN (Generative Adversarial Networks) 구조로는 SRGAN(Super Resolution Generative Adversarial Networks) 모델이 발표됐다. 모두 SRCNN의 성능을 웃도는 모델들이나 그중 가장 높은 성능을 끌어내는 SRGAN 조차 아직 완벽한 성능을 내진 못한다. 본 논문에서는 SRGAN의 성능을 개선하기 위해 사전 훈련된 특징 추출기(Pre-trained Feature Extractor) VGG(Visual Geometry Group)-19 모델을 변경하고, 기존 모델과 성능을 비교한다. 실험 결과, VGG-19 모델보다 윤곽이 뚜렷하고, 실제 영상과 더 가까운 영상을 합성할 수 있는 모델을 발견할 수 있을 것으로 기대된다.

Analysis of intracellular amino acids in the fermentation of Pichia pastoris X-33 and KM71H

  • Han, Kyung-Ah;Kim, Sun-Yong;Rhee, Jong-Il
    • 한국생물공학회:학술대회논문집
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    • 2005.10a
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    • pp.651-654
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    • 2005
  • Analysis of extra- and intra- cellular metabolites is very important to study cell metabolish. Intracellular amino acids in yeast are of great interest as precursors of desired products in biomass production of the feed industries and the production of glutamate. In this study, the fermentations of P. pastoris X-33 and KM71H were carried out in shake flasks. After centrifugation, the harvested cells were mechanically disrupted by using glass bead. The supernatants were used to analyze intracellular amino acid by HPLC system. For HPLC analysis, Resolve C18 column was used with Fluorescence detector. The OPA(o-phthalaldehyde) derivation reaction was employed for analysing amino acids at 30 $^{\circ}C$, 1 ml/min and gradient mode. The concentration of intracellular protein was measured by spectrophotometer.

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Prediction of Cobb-angle for Monitoring System in Adolescent Girls with Idiopathic Scoliosis using Multiple Regression Analysis

  • Seo, Eun Ji;Choi, Ahnryul;Oh, Seung Eel;Park, Hyun Joon;Lee, Dong Jun;Mun, Joung H.
    • Journal of Biosystems Engineering
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    • v.38 no.1
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    • pp.64-71
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    • 2013
  • Purpose: The purpose of this study was to select standing posture parameters that have a significant difference according to the severity of spinal deformity, and to develop a novel Cobb angle prediction model for adolescent girls with idiopathic scoliosis. Methods: Five normal adolescents girls with no history of musculoskeletal disorders, 13 mild scoliosis patients (Cobb angle: $10^{\circ}-25^{\circ}$), and 14 severe scoliosis patients (Cobb angle: $25^{\circ}-50^{\circ}$) participated in this study. Six infrared cameras (VICON) were used to acquire data and 35 standing parameters of scoliosis patients were extracted from previous studies. Using the ANOVA and post-hoc test, parameters that had significant differences were extracted. In addition, these standing posture parameters were utilized to develop a Cobb-angle prediction model through multiple regression analysis. Results: Twenty two of the parameters showed differences between at least two of the three groups and these parameters were used to develop the multi-linear regression model. This model showed a good agreement ($R^2$ = 0.92) between the predicted and the measured Cobb angle. Also, a blind study was performed using 5 random datasets that had not been used in the model and the errors were approximately $3.2{\pm}1.8$. Conclusions: In this study, we demonstrated the possibility of clinically predicting the Cobb angle using a non-invasive technique. Also, monitoring changes in patients with a progressive disease, such as scoliosis, will make possible to have determine the appropriate treatment and rehabilitation strategies without the need for radiation exposure.

Integrated Hybrid Device for High-Efficiency Size-Tunable Particle Separation (고효율 크기 가변적 입자 분리를 위한 통합 하이브리드 소자)

  • Choo, Seung Hee;Park, Jion;Kim, Tae Eun;Gang, Tae Gyeoung;An, Jun Seok;Oh, Gayeong;Kim, Yeojin;Park, Kyu Been;Park, Chaewon;Lee, Minjeong;Lim, Hyunjung;Nam, Jeonghun
    • Journal of Biomedical Engineering Research
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    • v.43 no.3
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    • pp.170-176
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    • 2022
  • Cell separation from a heterogenous mixture sample is an essential process for downstream analysis in biological, chemical, and clinical applications. This study demonstrates an integrated hybrid device of the viscoelastic focusing in a straight rectangular channel and subsequent size-based separation using acoustophoresis to attain high efficiency and separation tunability. For particle pre-alignment in a viscoelastic fluid, the flow rate higher than 10 μl/min was required. Surface acoustic wave-based lateral migration of particles with different sizes (13 and 27 ㎛) was examined at various applied voltages and flow rate conditions. Therefore, the flow rate of 100 μl/min and the applied voltage of 20 Vpp can be used for size-based particle separation.

The Fermentation Analysis of Mungyeong Green Apple (문경 풋사과를 활용한 발효 연구)

  • Kwon, Soon Goo;Choi, Sun Mi;Woo, Ji Hee;Supeno, Destiani;Choi, Won Sik
    • Journal of the Korean Society of Industry Convergence
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    • v.19 no.4
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    • pp.231-236
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    • 2016
  • In this study, Green apple from Mungyeong area was used as material in the fermentation process. In apple fruit growing process, to produce a high quality apple fruit, some Green apple should be removed. Since the removed Green apple fruit is inedible, it doesn't have any economical value. To solve this problem, this paper proposed fermentation process to increase the economical value of raw apple as a fermentation product. This research conducted seven days, and the pH and brix value analysis was done every 12 hours during fermentation process. The experimental results show that the fermentation product under blender treatment is better than cutting treatment and without cutting treatment. Initial brix 25% is the best treatment for fermentation because produce fermentation product with a good taste and aroma than other treatment.

The Role of High-throughput Transcriptome Analysis in Metabolic Engineering

  • Jewett, Michael C.;Oliveira, Ana Paula;Patil, Kiran Raosaheb;Nielsen, Jens
    • Biotechnology and Bioprocess Engineering:BBE
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    • v.10 no.5
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    • pp.385-399
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    • 2005
  • The phenotypic response of a cell results from a well orchestrated web of complex interactions which propagate from the genetic architecture through the metabolic flux network. To rationally design cell factories which carry out specific functional objectives by controlling this hierarchical system is a challenge. Transcriptome analysis, the most mature high-throughput measurement technology, has been readily applied In strain improvement programs in an attempt to Identify genes involved in expressing a given phenotype. Unfortunately, while differentially expressed genes may provide targets for metabolic engineering, phenotypic responses are often not directly linked to transcriptional patterns, This limits the application of genome-wide transcriptional analysis for the design of cell factories. However, improved tools for integrating transcriptional data with other high-throughput measurements and known biological interactions are emerging. These tools hold significant promise for providing the framework to comprehensively dissect the regulatory mechanisms that identify the cellular control mechanisms and lead to more effective strategies to rewire the cellular control elements for metabolic engineering.

Classification and Expression Profiling of Putative R2R3 MYB Genes in Rice

  • Kim, Bong-Gyu;Ko, Jae-Hyung;Min, Shin-Young;Ahn, Joong-Hoon
    • Journal of Applied Biological Chemistry
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    • v.48 no.3
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    • pp.127-132
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    • 2005
  • MYB genes, comprising group of related genes found in animal, plant, and fungal genomes, encode common DNA-binding domains composed of one to four repeat motifs. MYB genes containing two repeats (R2R3) constitute largest MYB gene family in plants. R2R3 MYB genes play important roles in regulation of secondary metabolism, control of cell shape, disease resistance, and hormone response. Eight-four R2R3 MYB genes were retrieved from rice genome for functional characterization of MYB genes. Analysis of MYB domains revealed each MYB domain contains three ${\alpha}$-helices with regularly spaced tryptophan residues. R2R3 MYB genes were divided into four subfamilies based on phylogenic analysis result. Real-time PCR analysis of 34 MYB genes revealed 12 MYB genes were highly expressed in seeds than in leaves, whereas 4 genes were highly expressed in leaves.

A Study on the Establishment of Evaluation Indicator Standards on Development Stages of Rural Village (농촌마을 발전단계별 평가지표 기준 설정 연구)

  • Kim, Young-Taek;Choi, Soo-Myung;Cho, Eun-Jung;Yoon, Chi Wook;Im, Sang-Bong
    • Journal of Korean Society of Rural Planning
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    • v.20 no.3
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    • pp.131-141
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    • 2014
  • This study aimed at setting up the grading indicator standards on development stages for phasing the continuous development process. To achieve the objective of this study, after referring to the proposed cases derived from the reference analysis, the development stages were classified. Also grading criteria of indicators according to development stages were established through the statistical analysis and expert group checking. Development stages of rural village were stepped into 4-stages through the reviews and analysis of reference literature ; preparation-entry-development-advanced stage. Reasonable achievement level of each development stage was established by considering the necessary development period and benchmarking reference target together. On the basis of these clear stepwise development phases, the grading criteria were proposed for determination of the incumbent development stages.

Effect of Electron Beam Irradiation on the Interfacial and Thermal Properties of Henequen/Phenolic Biocomposites

  • Pang, Yansong;Yoon, Sung Bong;Seo, Jeong Min;Han, Seong Ok;Cho, Donghwan
    • Journal of Adhesion and Interface
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    • v.6 no.4
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    • pp.12-17
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    • 2005
  • Natural fiber/phenolic biocomposites with chopped henequen fibers treated at various levels of electron beam irradiation (EBI) were made by means of a matched-die compression molding method. The interfacial property was explored in terms of interfacial shear strength measured by a single fiber microbonding test. The thermal properties were studied in terms of storage modulus, tan ${\delta}$, thermal expansion and thermal stability measured by dynamic mechanical analysis, thermomechanical analysis and thermogravimetric analysis, respectively. The result showed that the interfacial and thermal properties depend on the treatment level of EBI done to the henequen fiber surfaces. The present result also demonstrates that 10 kGy EBI is most preferable to physically modify the henequen fiber surfaces and then to improve the interfacial property of the biocomposite, supporting earlier results studied with henequen/poly (butylene succinate) and henequen/unsaturated polyester biocomposites.

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Informatics for protein identification by tandem mass spectrometry; Focused on two most-widely applied algorithms, Mascot and SEQUEST

  • Sohn, Chang-Ho;Jung, Jin-Woo;Kang, Gum-Yong;Kim, Kwang-Pyo
    • Bioinformatics and Biosystems
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    • v.1 no.2
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    • pp.89-94
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    • 2006
  • Mass spectrometry (MS) is widely applied for high throughput proteomics analysis. When large-scale proteome analysis experiments are performed, it generates massive amount of data. To search these proteomics data against protein databases, fully automated database search algorithms, such as Mascot and SEQUEST are routinely employed. At present, it is critical to reduce false positives and false negatives during such analysis. In this review we have focused on aspects of automated protein identification using tandem mass spectrometry (MS/MS) spectra and validation of the protein identifications of two most common automated protein identification algorithms Mascot and SEQUEST.

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