• Title/Summary/Keyword: Bio-analysis

검색결과 3,833건 처리시간 0.034초

바이오 패스웨이 다차원 분석 시스템 개발 (Development of Multidimensional Analysis System for Bio-pathways)

  • 서동민;최윤수;전선희;이민호
    • 한국콘텐츠학회논문지
    • /
    • 제14권11호
    • /
    • pp.467-475
    • /
    • 2014
  • 최근 유전체학의 발전, 웨어러블 디바이스의 확산, IT/NT의 발전 등에 따라 방대한 양의 바이오-메디컬 데이터가 생산되고, 이에 따라 빅데이터를 활용한 헬스케어 산업이 급속히 발달하고 있으며, 이와 관련된 빅데이터 기술은 국민의 건강 증대와 건강한 고령 삶을 제공하는 핵심 기술로 급부상하고 있다. 패스웨이(Pathway)는 단백질, 유전자, 세포 등의 생체적 요소 간의 역학관계 혹은 상호작용 등을 네트워크 형식으로 표현한 생물학적 심층지식으로, 바이오-메디컬 빅데이터 분석에 있어서 널리 활용되고 있다. 하지만 패스웨이는 매우 다양한 형태를 갖고 용량이 매우 큰 빅데이터로 이를 분석하는데 많은 시간이 소요되며, 현재까지도 다양한 패스웨이를 통합 분석할 수 있는 시스템은 전무하다. 그래서 본 논문에서는 세계적으로 가장 우수하고 방대한 양의 패스웨이를 제공하는 KEGG 패스웨이 데이터베이스로부터 사용자가 관심 갖는 패스웨이만을 자동 수집하고 패스웨이 간 계층구조를 기반으로 네트워크를 구성 후, 해당 패스웨이 네트워크에 대한 클러스터링과 핵심 패스웨이 선정을 통해 패스웨이 간의 역학관계 또는 상호작용을 직관적으로 분석할 수 시스템을 제안했다. 마지막으로, 다양한 성능 평가 결과를 통해 개발한 분석 시스템의 우수성을 입증한다.

Identification and Characterization of Hydrogen Peroxide-generating Lactobacillus fermentum CS12-1

  • Kang, Dae-Kyung;Oh, H.K.;Ham, J.-S.;Kim, J.G.;Yoon, C.H.;Ahn, Y.T.;Kim, H.U.
    • Asian-Australasian Journal of Animal Sciences
    • /
    • 제18권1호
    • /
    • pp.90-95
    • /
    • 2005
  • Lactic acid bacteria were isolated from silage, which produce high level of hydrogen peroxide in cell culture supernatant. The 16S rDNA sequences of the isolate matched perfectly with that of Lactobacillus fermentum (99.9%), examined by a 16S rDNA gene sequence analysis and similarity search using the GenBank database, thus named L. fermentum CS12-1. L. fermentum CS12-1 showed resistance to low pH and bile acid. The production of hydrogen peroxide by L. fermentum CS12-1 was confirmed by catalase treatment and high-performance liquid chromatography. L. fermentum CS12-1 accumulated hydrogen peroxide in culture broth as cells grew, and the highest concentration of hydrogen peroxide reached 3.5 mM at the late stationary growth phase. The cell-free supernatant of L. fermentum CS12-1 both before and after neutralization inhibited the growth of enterotoxigenic Escherichia coli K88 that causes diarrhea in piglets.

The Inhibitory Effect of Baicalin on the Short-Term Food Intake in C57BL/6J Mice

  • Kim, Eun-Ho;Son, Rak-Ho;Myoung, Hyeon-Jong;Mar, Woong-Chon;Kim, Won-Ki;Nam, Kung-Woo
    • Biomolecules & Therapeutics
    • /
    • 제18권2호
    • /
    • pp.171-177
    • /
    • 2010
  • Appetite is inhibited by the anorexigenic neuropeptides POMC (proopiomelanocortin) and CART (cocaine-amphetamine-regulated transcript) in the hypothalamus. The present study was performed to examine the inhibitory effects of baicalin against food intake and the upregulation of POMC/CART. Short-term food intake (48 h) was significantly inhibited by treatment with baicalin (10 mg/kg, p<0.05) in C57BL/6 mice. Immunohistochemical analysis showed that baicalin upregulated POMC and CART levels in the arcuate nucleus of the hypothalamus. These effects were also examined using an in vitro system. pPOMC-Luc or pCART-Luc plasmids were transformed into mouse N29-2 neuronal and human SH-SY5Y cells, and the activities of baicalin were examined in these cells. Baicalin increased POMC and CART promoter-driven luciferase activity in a dose-dependent manner without cytotoxic effects. These results suggest that baicalin downregulates short-term food intake while upregulating POMC and CART expression.

Monitoring of Veterinary Antibiotics in Animal Compost and Organic Fertilizer with CHARM II System

  • Kim, Ki-Hyun;Hong, Young Kyu;Park, Saet Byul;Kwon, Soon Ik;Kim, Sung-Chul
    • 한국토양비료학회지
    • /
    • 제47권2호
    • /
    • pp.133-139
    • /
    • 2014
  • Veterinary antibiotics (VAs) in animal compost and organic fertilizer can have adverse effect on ecosystem and eventually human health. The main purpose of this research was to evaluate feasibility of Charm II system for monitoring residuals of VAs in animal compost and organic fertilizer. Four different VAs (Tetracyclines: TCs, Sulfonamides: SAs, Macrolides: MLs, and ${\beta}$-lactams: ${\beta}$-LTs) were analyzed and total of 100 samples were monitored. Results reveled that SAs in animal compost showed the highest detection frequency (64%) with exceeded concentration of criteria. However, very low detection frequency (0-12%) for ${\beta}$-LTs was observed in animal compost and organic fertilizer. Depending on physicochemical properties of each VAs, detection frequency of VAs was determined. In conclusion, charm II system can be utilized to screen if residual of VAs is in animal compost and organic fertilizer. Also, more research is necessary to establish standard method for analysis of VAs in complex matrix and to minimize adverse effect of VAs from source to environment.

Two-year field monitoring shows little evidence that transgenic potato containing ABF3 significantly alters its rhizosphere microbial community structure

  • Nam, Ki Jung;Kim, Hyo-Jeong;Nam, Kyong-Hee;Pack, In Soon;Kim, Soo Young;Kim, Chang-Gi
    • Journal of Ecology and Environment
    • /
    • 제41권3호
    • /
    • pp.99-106
    • /
    • 2017
  • Background: Plants over-expressing Arabidopsis ABF3 (abscisic acid-responsive element-binding factor 3) have enhanced tolerance to various environmental stresses, especially drought. Using terminal restriction fragment length polymorphism (T-RFLP) analysis, we compared the rhizosphere-associated structures of microbial communities for transgenic potato containing this gene and conventional "Jopoong" plants. Results: During a 2-year field experiment, fungal richness, evenness, and diversity varied by year, increasing in 2010 when a moderate water deficit occurred. By contrast, the bacterial richness decreased in 2010 while evenness and diversity were similar in both years. No significant difference was observed in any indices for either sampling time or plant line. Although the composition of the microbial communities (defined as T-RF profiles) changed according to year and sampling time, differences were not significant between the transgenic and control plants. Conclusions: The results in this study suggest that the insertion of ABF3 into potato has no detectable (by current T-RFLP technique) effects on rhizosphere communities, and that any possible influences, if any, can be masked by seasonal or yearly variations.

열수가압탄화 공정에 의한 음식물폐기물로부터의 Bio Solid Reuse Fuel (Bio-SRF) 연료제조에 관한 실증연구 (A Study on the Manufacture of Bio-SRF from the Food Waste by Hydrothermal Carbonization (HTC) Process)

  • 한단비;염규인;박성규;조욱상;백영순
    • 한국수소및신에너지학회논문집
    • /
    • 제28권4호
    • /
    • pp.426-432
    • /
    • 2017
  • Hydrothermal carbonization (HTC) is an effective and environment friendly technique; it possesses extensive potential towards producing high-energy density solid fuels. it is a carbonization method of thermochemical process at a relatively low temperature ($180-250^{\circ}C$). It is reacted by water containing raw material. However, the production and quality of solid fuels from HTC depends upon several parameters; temperature, residence time, and pressure. This study investigates the influence of operating parameters on solid fuel production during HTC. Especially, when food waste was reacted for 2 hours, 4 hours, and 8 hours at $200^{\circ}C$ and 2.0-2.5 MPa, Data including heating value, proximate analysis and water content was consequently collected and analyzed. It was found that reaction temperature, residence time are the primary factors that influence the HTC process.

DMT 제조 과정서 발생하는 MFB의 회수에 관한 연구 (Recovery of MFB Generated from Dimethyl Terephtalate Production Process)

  • 김선호;류영;김종천;김석찬
    • 공업화학
    • /
    • 제26권5호
    • /
    • pp.621-623
    • /
    • 2015
  • 본 연구는 Dimethyl terephtalate (DMT) 제조 공정에서 발생하는 반응 부산물로부터 고순도의 Methyl 4-formylbenzoate (MFB)를 정제하는 방법에 관한 내용이다. 반응 부산물에 포함된 MFB의 알데하이드 작용기와 메탄올을 반응시켜 아세탈 화합물로 전환하여 분리하고, 연속적으로 산 촉매 하에 가수분해하여 90% 수율로 MFB를 얻을 수 있었다. 얻어진 MFB는 $^1H$ NMR 및 $^{13}C$ NMR로 구조를 확인하였으며 또한 GC 분석을 통해서 99% 이상의 순도를 확인하였다.

콤바인 예취부 고장진단을 위한 예취 칼날부의 진단 시스템 개발(I) - 진동 및 부하 신호 분석 - (Development of Measurement System of Cutter Conditions for Combine Diagnosis (I) - Analysis of Vibration and Load Signals -)

  • 최창현;김용주;김종혁;문정환
    • Journal of Biosystems Engineering
    • /
    • 제32권3호
    • /
    • pp.190-196
    • /
    • 2007
  • The purpose of this study is to develop a measurement system of cutter conditions for combine header diagnosis during rice harvesting. A load cell was installed at the locker-arm to measure load fluctuation and an acceleration senor was used to monitor vibration signal of cutter bar. The data were collected from a paddy field during harvesting. The tests were conducted with a normal cutter, a loosened cutter, a broken cutter, and a worn-out connecter pin at the field. The vibration signals converted by FFT (Fast Fourier Transformation), filtered, and normalized. The load data and peak values of vibration signals in four different frequency ranges were used to determine the cutting operation and the cutter conditions of combine. The multiple comparison tests showed that the load data and peak values of vibration signals were important to monitor the cutting operation and cutter conditions of combine header.

Cloning, Sequencing and Characterization of Mitochondrial Control Region of the Domestic Silkwom, Bombyx mori

  • Lee, Jin-Sung;Kim, Ki-Hwan;Hoe, Hyang-Sook;Park, Jae-Heung;Kang, Seok-Woo;Lee, Sang-Han;Hwang, Jae-Sam
    • International Journal of Industrial Entomology and Biomaterials
    • /
    • 제2권1호
    • /
    • pp.87-89
    • /
    • 2001
  • The nucleotide sequence of the domestic silkworm (Bombyx mori) mitochondrial (mt) control region and its flanking genes was determined from PCR clones. The control region of the silkworm mt genome was located between the small ribosomal RNA gene and transfer RN $A^{Met}$. This 499 bp control region hale 95.4% A+T content. Extensive comparative analysis studies performed with similar control region of other insect genomes could not reveal a highly conserved region containing conserved motifs of animal mito-chondrial genome. The remarkable feature that found in this control region was the presence of tandem motifs containing nine repetitive sequences. The potential usefulness of this motif sequences for Bombyx species or their taxonomically related species is enhanced by its unique localization in the maternally inheritance mitochondrial molecule.e.

  • PDF

ASM3+Bio-P module을 이용한 기존 BNR공정 모사 (Modeling of Existing BNR Process using ASM3 and Modified Bio-P Module)

  • 노해연;길경익
    • 한국물환경학회지
    • /
    • 제23권3호
    • /
    • pp.309-313
    • /
    • 2007
  • In Activated Sludge Model, COD fraction of primary settled municipal wastewater was a very important parameter. In this study, the COD fraction was determined using the oxygen utilization rate experiments. Readily biodegradable COD ($S_S$) fraction was observed about 29.7% of influent TCOD. $S_I$, $X_I$, and $X_S$ were analyzed to be 7.6%, 7.3%, and 55.4% of TCOD, respectively. The model used in this study was developed based on ASM3 and modified Bio-P module in order to simulate the existing BNR process. Parameter estimation results showed that $Y_{STO,O2}$, $Y_{STO,NO}$, $Y_{H,O2}$, $Y_{H,NO}$, $Y_{PO4}$, ${\mu}_H$, $b_H$, ${\mu}_A$, $q_{PHA}$, $q_{PP}$ and ${\mu}_{PAO}$ were 0.7, 0.64, 0.61, 0.48, 0.31, 3.9, 0.1, 1.35, 4.98, 1.8 and 0.59, respectively. Using the presented model and the estimated parameters, the simulation of the existing BNR process was successfully conducted.