• Title/Summary/Keyword: Bio data

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Model Evaluation for Predicting the Full Bloom Date of Apples Based on Air Temperature Variations in South Korea's Major Production Regions (기온 변화에 따른 우리나라 사과 주산지 만개일 예측을 위한 모델 평가)

  • Jae Hoon Jeong;Jeom Hwa Han;Jung Gun Cho;Dong Yong Lee;Seul Ki Lee;Si Hyeong Jang;Suhyun Ryu
    • Journal of Bio-Environment Control
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    • v.32 no.4
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    • pp.501-512
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    • 2023
  • This study aimed to assess and determine the optimal model for predicting the full bloom date of 'Fuji' apples across South Korea. We evaluated the performance of four distinct models: the Development Rate Model (DVR)1, DVR2, the Chill Days (CD) model, and a sequentially integrated approach that combined the Dynamic model (DM) and the Growing Degree Hours (GDH) model. The full bloom dates and air temperatures were collected over a three-year period from six orchards located in the major apple production regions of South Korea: Pocheon, Hwaseong, Geochang, Cheongsong, Gunwi, and Chungju. Among these models, the one that combined DM for calculating chilling accumulation and the GDH model for estimating heat accumulation in sequence demonstrated the most accurate predictive performance, in contrast to the CD model that exhibited the lowest predictive precision. Furthermore, the DVR1 model exhibited an underestimation error at orchard located in Hwaseong. It projected a faster progression of the full bloom dates than the actual observations. This area is characterized by minimal diurnal temperature ranges, where the daily minimum temperature is high and the daily maximum temperature is relatively low. Therefore, to achieve a comprehensive prediction of the blooming date of 'Fuji' apples across South Korea, it is recommended to integrate a DM model for calculating the necessary chilling accumulation to break dormancy with a GDH model for estimating the requisite heat accumulation for flowering after dormancy release. This results in a combined DM+GDH model recognized as the most effective approach. However, further data collection and evaluation from different regions are needed to further refine its accuracy and applicability.

Comparison of Seedling Quality of Cucumber Seedlings and Growth and Production after Transplanting according to Differences in Seedling Production Systems (육묘 생산 시스템 차이에 따른 오이 모종의 묘소질과 정식 후 생육 비교)

  • Soon Jae Hyeon;Hwi Chan Yang;Young Ho Kim;Yun Hyeong Bae;Dong Cheol Jang
    • Journal of Bio-Environment Control
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    • v.33 no.2
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    • pp.88-98
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    • 2024
  • This study provides basic data on the growth and production of seedlings produced in plant factories with artificial lighting by comparing seedling quality, growth and fruit characteristics, and production after transplanting cucumber seedlings according to environmental differences between plant factories with artificial lighting and conventional nurseries in greenhouse. The control group consisted of greenhouse seedlings (GH) grown in the conventional nursery before transplanting. Plant factory to greenhouse seedlings (PG) were grown for 9 days in a plant factory with artificial lighting and for 13 days in an conventional nursery. Plant factory seedlings (PF) were grown in a plant factory with artificial lighting for 22 days until planting. In terms of seedling quality, PFs had the highest relative growth rate and compactness and the best root zone development. After transplanting PFs tended to grow faster, the first harvest date was 2 days earlier than that of GHs, and the growing season ended 1 day earlier. The female flower flowering rate of the PFs was high, and the fruit set rate was of PF the lowest. The production per unit area was highest for PFs at 10.23kg Performance index on the absorption basis, the most sensitive chlorophyll fluorescence parameter, was highest at 4.14 for PFs at 4 weeks after transplantation. By comparing the maximum quantum yield of primary PS II photochemistry and dissipated energy flux per PS II reaction center electron at 4 weeks after transplantation, PFs tended to be the least stressed. PFs had the best seedling quality, growth, and production after planting, and fruit quality was consistent with that of greenhouse seedlings. Therefore, plant factory seedlings can be used in the field.

DISEASE DIAGNOSED AND DESCRIBED BY NIRS

  • Tsenkova, Roumiana N.
    • Proceedings of the Korean Society of Near Infrared Spectroscopy Conference
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    • 2001.06a
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    • pp.1031-1031
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    • 2001
  • The mammary gland is made up of remarkably sensitive tissue, which has the capability of producing a large volume of secretion, milk, under normal or healthy conditions. When bacteria enter the gland and establish an infection (mastitis), inflammation is initiated accompanied by an influx of white cells from the blood stream, by altered secretory function, and changes in the volume and composition of secretion. Cell numbers in milk are closely associated with inflammation and udder health. These somatic cell counts (SCC) are accepted as the international standard measurement of milk quality in dairy and for mastitis diagnosis. NIR Spectra of unhomogenized composite milk samples from 14 cows (healthy and mastitic), 7days after parturition and during the next 30 days of lactation were measured. Different multivariate analysis techniques were used to diagnose the disease at very early stage and determine how the spectral properties of milk vary with its composition and animal health. PLS model for prediction of somatic cell count (SCC) based on NIR milk spectra was made. The best accuracy of determination for the 1100-2500nm range was found using smoothed absorbance data and 10 PLS factors. The standard error of prediction for independent validation set of samples was 0.382, correlation coefficient 0.854 and the variation coefficient 7.63%. It has been found that SCC determination by NIR milk spectra was indirect and based on the related changes in milk composition. From the spectral changes, we learned that when mastitis occurred, the most significant factors that simultaneously influenced milk spectra were alteration of milk proteins and changes in ionic concentration of milk. It was consistent with the results we obtained further when applied 2DCOS. Two-dimensional correlation analysis of NIR milk spectra was done to assess the changes in milk composition, which occur when somatic cell count (SCC) levels vary. The synchronous correlation map revealed that when SCC increases, protein levels increase while water and lactose levels decrease. Results from the analysis of the asynchronous plot indicated that changes in water and fat absorptions occur before other milk components. In addition, the technique was used to assess the changes in milk during a period when SCC levels do not vary appreciably. Results indicated that milk components are in equilibrium and no appreciable change in a given component was seen with respect to another. This was found in both healthy and mastitic animals. However, milk components were found to vary with SCC content regardless of the range considered. This important finding demonstrates that 2-D correlation analysis may be used to track even subtle changes in milk composition in individual cows. To find out the right threshold for SCC when used for mastitis diagnosis at cow level, classification of milk samples was performed using soft independent modeling of class analogy (SIMCA) and different spectral data pretreatment. Two levels of SCC - 200 000 cells/$m\ell$ and 300 000 cells/$m\ell$, respectively, were set up and compared as thresholds to discriminate between healthy and mastitic cows. The best detection accuracy was found with 200 000 cells/$m\ell$ as threshold for mastitis and smoothed absorbance data: - 98% of the milk samples in the calibration set and 87% of the samples in the independent test set were correctly classified. When the spectral information was studied it was found that the successful mastitis diagnosis was based on reviling the spectral changes related to the corresponding changes in milk composition. NIRS combined with different ways of spectral data ruining can provide faster and nondestructive alternative to current methods for mastitis diagnosis and a new inside into disease understanding at molecular level.

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A Study on an Estimated Location of Seongjae Ryu, Junggyo's Okgye Gugok in GaPyeong-Gun (성재 유중교의 가평 옥계구곡 위치추정 연구)

  • Kang, Kee-Rae;Lee, Hae-Ju;Lee, Hyun-Chae;Kim, Hee-Chae;Kim, Dong-Phil;Ha, Seung Kun
    • Journal of the Korean Institute of Traditional Landscape Architecture
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    • v.35 no.3
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    • pp.32-40
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    • 2017
  • The introduction of neo-Confucianism as the ideological foundation of Joseon, and its root Confucianism have become the origin of the life, scholarship and ideology of the Korean people. Additionally, it was considered the best to follow the teachings of the discipline's advocates including Confucius (孔子), Mencius (孟子), Zisi (子思), ZhuXi (朱子). Among these teachers, ZhuXi was the one who overtly presented the way of self-discipline, of which goal lies in attaining the character by the manifestation of vitality (氣 ki) and rationality (理 i) and contemplating on them. As he regarded natural places with mountains and waters as stages and tools for practicing toward the enlightenment, Confucian scholars in Joseon also followed his example in the spirit of honoring and studying ZhuXi (尊朱子, 學朱子), which became the basic thoughts and practical philosophy among them. Ryu, Junggyo, the neo-Confucian dogmatist, was no exception to applaud the nature, as he designated and ruled Okgye Gugok. On the basis of these backgrounds, this study aims to estimate the geographic places of Okgye Gugok, which was set by Ryu, Junggyo, a Confucian scholar in late-Joseon period, by collecting and analyzing the basic data, starting from Gareung-gun Okgye Sansugi(嘉陵郡玉溪山水記) which is the primary text authored by Seongjae Ryu, Junggyo. The literature study is followed by ten field trips to the estimated locations of Okgye Gugok, and verification of the estimations by three locals who were born and raised in Okgye Gugok. Coordinates and photographs were obtained as spatial data for each location of nine Gok(曲) estimated through this study. They will serve as a primary and critical data for story-telling and tourism resource in Okgye Gugok. The significance of this study is that it provides the primary data for designating the locations of Gok(曲) in Okgyeo Gugok.

Radiotherapy Incidents Analysis Based on ROSIS: Tendency and Frequency (ROSIS 자료 기반 방사선 사고 사례 분석 : 경향과 빈도)

  • Koo, Jihye;Yoon, MyongGeun;Chung, Won Kuu;Kim, Dong Wook
    • Progress in Medical Physics
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    • v.25 no.4
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    • pp.298-303
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    • 2014
  • In this study, we examine the trends and types of incidents frequently occur during radiation therapy by using the data from the radiation oncology safety information system (ROSIS), according to discovery method explores the development direction of future research accident cause factor control method. This study was carried out analysis of incident data in ROSIS nearly 1163 cases in last 11 years from 2003 to 2013. We categorized into treatment methods, found the time, discoverer of occupations and finding ways to analyze the data. Then, we calculate the percentage and the classification for each item. About 1163 cases of incident cases including the near miss cases, external radiation therapy, brachytherapy and other were 97%, 2% and 1%. In the case was improperly planned dose delivery was 44% (497 cases) which 429 cases (86%) was found before 3 fractions and 13 cases were found after 11 fractions. The investigation was found to be distributed in various a found times. Approximately 42% of found time was during treatment and 29% of patients were found the problem during inspection chart. Occupation to discover the most radiation accidents was the radiation therapist (53%) who works in treatment room. Among 1163 incidence cases, 24% cases were found the accident before the treatment, therefore most of accident were found after of during the treatment (70%, 813 cases). This trend is acquired through ROSIS analysis, is expected to be not significantly different in the case of Korea, so it is necessary more diverse and systematic research for the prevention and early detection by using the ROSIS data.

Analysis of Trans-splicing Transcripts in Embryonic Stem Cell (배아줄기세포에서 트랜스 스플라이싱 전사체의 분석)

  • Ha, Hong-Seok;Huh, Jae-Won;Kim, Dae-Soo;Park, Sang-Je;Bae, Jin-Han;Ahn, Kung;Yun, Se-Eun;Kim, Heui-Soo
    • Journal of Life Science
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    • v.19 no.4
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    • pp.549-552
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    • 2009
  • Genetic mutations by gene fusion result from chromosomal rearrangement, trans-splicing, and intergenic splicing. Trans-splicing is a phenomenon in which two pre-mRNAs grow together into one. We analyzed the trans-splicing products in embryonic stem cells. By using bioinformatic tools, 70 trans-splicing transcripts were identified. They are classified into 6 types according to fusion pattern: 5'UTR-5'UTR, 5'UTR-3'UTR, 3'UTR-3'UTR, 5'UTR-CDS, 3'UTR-CDS, CDS-CDS. The fusion products are more abundant in CDS regions than in UTR regions, which contain multiple intron numbers. Chromosome analysis showing gene fusion via trans-splicing indicated that chromosomes 17 and 19 were activated. These data are of great use for further studies in relation to fusion genes and human diseases.

Factors Influencing Frequency of Abnormal Peak in the Measurement of HbA1c by HPLC (HPLC법을 이용한 HbA1c 측정시 Abnormal Peak의 빈도와 원인)

  • Kim, Sun-Kyung;Bae, Ae-Young;Choi, Dae-Yong;Kim, Myung-Soo;Yoo, Kwang-Hyun;Ki, Chang-Seok
    • Korean Journal of Clinical Laboratory Science
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    • v.37 no.2
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    • pp.71-77
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    • 2005
  • We experienced the specimen that contains a hemoglobin variant known as interference from HbAS in October 2003. It was the first case of Hb variants since Samsung Medical Center began conducting glycohemoglobin College of American Pathologists surveys in 1997. The purpose of this study is to share our experience with the specimen and promote the understanding of Hb variants & derivatives. We've performed cross checks to examine HbA1c by using two pieces of equipment; the TOSHOH G7 and BIO-RAD VARIANT-T(turbo), and Automatic High Performance Liquid Chromatography(HPLC) as an analytic measurement method. HPLC provides different fractional information of hemoglobin with a two-dimensional graph as well as numeric results. We have been performing a "Systematic Checking Process". Three specimen suspicious of Hb variants & derivatives were found through this process. College of American Pathologists notified that it is important for users to be aware of the limitation of their glycohemoglobin method to avoid reporting incorrect results due to interference from hemoglobin variants or hemoglobin adducts. Therefore, laboratory findings of Hb variants & derivatives are very important. The experience of qualified technicians with professional knowledge in Hb variants is the most important aspect in finding Hb variants. Korea is homogeneous in race and is not in an area with a higher finding rate of Hb variants. While 1,024 cases of Hb variants have been found in Japan, we do not have specific data on how many cases of Hb variants have been found in Korea. Considering Hb variant cases in Japan, which is geographically close to us, it is presumed that there must be various Hb variant cases in Korea. If domestic laboratories set a systemic protocol and build a network to share our experience in Hb variants, I expect the Korean Hb variants could also be listed on the world's Hb variant list.

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Research on the modified algorithm for improving accuracy of Random Forest classifier which identifies automatically arrhythmia (부정맥 증상을 자동으로 판별하는 Random Forest 분류기의 정확도 향상을 위한 수정 알고리즘에 대한 연구)

  • Lee, Hyun-Ju;Shin, Dong-Kyoo;Park, Hee-Won;Kim, Soo-Han;Shin, Dong-Il
    • The KIPS Transactions:PartB
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    • v.18B no.6
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    • pp.341-348
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    • 2011
  • ECG(Electrocardiogram), a field of Bio-signal, is generally experimented with classification algorithms most of which are SVM(Support Vector Machine), MLP(Multilayer Perceptron). But this study modified the Random Forest Algorithm along the basis of signal characteristics and comparatively analyzed the accuracies of modified algorithm with those of SVM and MLP to prove the ability of modified algorithm. The R-R interval extracted from ECG is used in this study and the results of established researches which experimented co-equal data are also comparatively analyzed. As a result, modified RF Classifier showed better consequences than SVM classifier, MLP classifier and other researches' results in accuracy category. The Band-pass filter is used to extract R-R interval in pre-processing stage. However, the Wavelet transform, median filter, and finite impulse response filter in addition to Band-pass filter are often used in experiment of ECG. After this study, selection of the filters efficiently deleting the baseline wandering in pre-processing stage and study of the methods correctly extracting the R-R interval are needed.

Human Exposure Assessment of Pesticide Residues in Cattle by-product Fed the Rice Straw (농약이 잔류된 볏짚조사료을 급여한 소의 부산물 섭취에 따른 인체노출평가)

  • Gil, Geun-Hwan;Paik, Min-Kyoung;Kim, Jin-Bae;Kim, Chan-Sub;Son, Kyung-Ae;Im, Geon-Jae;Ihm, Yang-Bin;Lee, Kyu-Seung
    • The Korean Journal of Pesticide Science
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    • v.17 no.4
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    • pp.249-255
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    • 2013
  • The objective of this study was to investigate the exposure assessment of Korean consumers to edifenphos and tricyclazole in cattle product fed the rice straw, using a probabilistic approach. We used tricyclazole and edifenphos residue data in rice straw reported by National Academy of Agricultural Science (NAAS) for the 1998, 1999, 2001 and 2010 monitoring study and National Agricultural Products Quality Management Service (NAQS) for 2009 monitoring study. The mean exposures of edifenphos and tricyclazole for all of Korean consumers were 0.027% and 0.0006% of ADI and $99%^{th}$ percentile exposures were 0.034% and 0.0007% of ADI respectively. The group of 1~6 years old consumers has the lowest exposure of edifenphos and tricyclazole. The group of 19~29 years old consumers has the highest exposure of edifenphos and tricyclazole.

BIO-PSYCHOSOCIAL STUDY OF EMOTIONAL BEHAVIORAL PROBLEMS IN KOREAN ELEMENTARY SCHOOL CHILDREN (I) - An Epidemiological Study of Emotional Behavioral Problems in Korean Elementary School Children by Rutter's Questionnaire - (국민학교아동의 정서행동문제에 대한 생물${\cdot}$정신사회학적 연구 (I) - Rutter의 아동행동평가표에 의한 국민학교아동의 정서행동문제조사 -)

  • Jang, Kyung-June;Lee, Chung-Kyoon;Hong, Kang-E
    • Journal of the Korean Academy of Child and Adolescent Psychiatry
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    • v.1 no.1
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    • pp.94-107
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    • 1990
  • The survey of emotional behavioral problems in elementary school children provide baseline data for understanding, treating and preventing emotional behavioral problems in children. Since children can show different behaviors at home and at school, parents' information alone can lead to underestimate severity and prevalence rate of emotional behavioral problems in children. Thus, the author investigated the different the pattern of emotional behavioral problems in elementary school children by various socio-enviornmental factors in urban(Seoul) and rural area, by employing both parents' and teachers' questionnaire. The results were as follows ; Analysis of Rotter's questionnaire, in which high scores mean more serious emotional behavioral problems than low scores. The mean total problems scores for rural elementary school children were higher than those of Seoul elementary school children, and boys showed higher scores than girls. In relation to grade, mena total problems scores diminished as grade increased up to 4th or 5th, and then relatively high score for the 6th grade. Parent's education had significant effect on the total problem scores, that children of less educated parents showed higher score than children of more educated parents. Likewise the highest score was observed in children of unemployed parents. These results demonstrated that emotional behavioral children are related to various socio-environment factors.

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