• Research in Plant Disease
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• v.15 no.2
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• pp.101-105
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• 2009

The biocontrol agent Serratia plymuthica A21-4 was selected and proved as an excellent inhibitor of Phytophthora blight of pepper through in vitro and in vivo experiments in previous studies. To enhance the colonizing density of S. plymuthica A21-4 on plant root and rhizosphere soil, some soil conditions might effect on the colonization of the bacteria were examined. The results obtained from the study indicated that the soils containing more sand were favorable to root colonization of S. plymuthica A21-4. Organic amendment such as 3% maize straw(w/w) was helpful to colonize the bacteria in root and soil. The soil temperature about $20^{\circ}C$, water content around 40%, and soil pH near to neutral or slightly acidic, were optimum condition for the colonization of S. plymuthica A21-4 in the rhizosphere soil and roots of pepper. In addition, existence of indigenous biotic entities was beneficial to the colonization of S. plymuthica A21-4.

• Journal of Soil and Groundwater Environment
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• v.20 no.4
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• pp.113-121
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• 2015

The contaminated soil at abandoned smelter areas present challenge for remediation, as the degraded materials are typically deficient in nutrients, and rich in toxic heavy metals and metalloids. Bioremediation technique is to isolate new strains of microorganisms and develop successful protocols for reducing metal toxicity with heavy metal tolerant species. The present study collected metal contaminated soil and characterized for pH and EC values, and heavy metal contents. The pH value was 5.80, representing slightly acidic soil, and EC value was 13.47 mS/m. ICP-AES analytical results showed that the collected soil samples were highly contaminated with various heavy metals and metalloids such as lead (183.0 mg/kg), copper (98.6 mg/kg), zinc (91.6 mg/kg), and arsenic (48.1 mg/kg), respectively. In this study, a bacterial strain, Bacillus cereus KM-15, capable of adsorbing the heavy metals was isolated from the contaminated soils by selective enrichment and characterized to apply for the bioremediation. The effects of heavy metal on the growth of the Bacillus cereus KM-15 was determined in liquid cultures. The results showed that 100 mg/L arsenic, lead, and zinc did not affect the growth of KM-15, while the bacterial growth was strongly inhibited by copper at the same concentration. Further, the ability of the bacteria to adsorb heavy metals was evaluated.

• Korean Journal of Medicinal Crop Science
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• v.23 no.3
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• pp.214-222
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• 2015

This study was conducted to evaluate the growth conditions and vegetation of Peucedanum japonicum habitat in uninhabited islands of Incheon Korea. The emergence area of Peucedanum japonicum was 4.9 m distance in coastline, and altitude and slope was 7.4m and 47.5%. Soil pH, organic matter and $P_2O_5$ of habitat were 7.1, 8.3% and 29.0 mg/kg, and contents of K, Ca, Mg and Na were 0.66, 4.9, 3.4 and $1.13cmol^+/kg$, respectively. Growth plants with Peucedanum japonicum were total 55 taxa, and Gakeuldo in uninhabited islands was the most as 25 taxa. In growth plants with Peucedanum japonicum, plants of over 25% frequence per plot were Miscanthus sinensis, Dendranthema boreale, Lilium lancifolium, Hemerocallis middendorffii, Elymus dahuricus, Cirsium japonicum var. maackii, Asparagus schoberioides, Gypsophila oldhamiana, Cocculus trilobus, Silene aprica var. oldhamiana, Artemisia capillaris, Crepidiastrum denticulatum and Sedum oryzifolium. The vegetation of Peucedanum japonicum habitat was classified into Aster spathulifolius community, Miscanthus sinensis community, Dendranthema boreale community, Setaria viridis var. pachystachys community, Cirsium japonicum var. maackii community and Hemerocallis middendorffii community. According to general condition of habitat, suitable growing areas was determined to slightly acidic from mild alkaline soils.

• Journal of Microbiology and Biotechnology
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• v.18 no.5
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• pp.805-814
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• 2008

Liming of acidic soils can prevent aluminum toxicity and improve crop production. Some maize lines show aluminum (Al) tolerance, and exudation of organic acids by roots has been considered to represent an important mechanism involved in the tolerance. However, there is no information about the impact of liming on the structures of bacterial and fungal communities in Cerrado soil, nor if there are differences between the microbial communities from the rhizospheres of Al-tolerant and Al-sensitive maize lines. This study evaluated the effects of liming on the structure of bacterial and fungal communities in bulk soil and rhizospheres of Al-sensitive and Al-tolerant maize (Zea mays L.) lines cultivated in Cerrado soil by PCR-DGGE, 30 and 90 days after sowing. Bacterial fingerprints revealed that the bacterial communities from rhizospheres were more affected by aluminum stress in soil than by the maize line (Al-sensitive or Al-tolerant). Differences in bacterial communities were also observed over time (30 and 90 days after sowing), and these occurred mainly in the Actinobacteria. Conversely, fungal communities from the rhizosphere were weakly affected either by liming or by the rhizosphere, as observed from the DGGE profiles. Furthermore, only a few differences were observed in the DGGE profiles of the fungal populations during plant development when compared with bacterial communities. Cloning and sequencing of 16S rRNA gene fragments obtained from dominant DGGE bands detected in the bacterial profiles of the Cerrado bulk soil revealed that Actinomycetales and Rhizobiales were among the dominant ribotypes.

• Journal of Applied Biological Chemistry
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• v.49 no.1
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• pp.28-32
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• 2006

Effect of organic-C on immobilization and nitrification patterns in acidic soil was examined during 20 weeks incubation period to verify if organic amendments such as composted material can increase soil retention of N by stimulating microbial immobilization of $NH_4^+$. Four treatments were laid out: control without fertilizer N and glucose (treatment code: S), ammonium sulfate (SN), ammonium sulfate with single glucose at the commencement (0 week) of incubation (SNG), and ammonium sulfate with double glucose at 0 and 4 weeks of incubation (SNGG). Glucose application (SNG) significantly increased microbial immobilization of $NH_4^+$ within 1 week of incubation over SN. Immobilization was followed by remineralization thereafter; however, second-application of glucose (SNGG) restored $NH_4^+$ immobilization. At the same time, nitrification was significantly inhibited by glucose application as indicated by consistently low $NO_3^-$ concentration in SNG and SNGG soils, suggesting that microbial assimilation of $NH_4^+$ is predominant compared to nitrification when available C-source is abundant. These results suggest application of chemical fertilizer-N with organic amendment would have beneficial effect on soil-N retention and environmental conservation by reducing production of $NO_3^-$ which is likely to be lost through leaching or denitrification.

• Korean Journal of Agricultural Science
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• v.47 no.4
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• pp.1049-1056
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• 2020

Ultrafine dust causes asthma and respiratory and cardiovascular diseases when inhaled. Ammonia (NH3) plays a big role in ultrafine dust formation in the atmosphere by reacting with nitrogen oxides (NOx) and sulfur oxides (SOx) emitted from various sources. The agricultural sector is the single largest contributor of NH3, with the vast majority of emissions ensuing from fertilizers and livestock sector. Interest in using biochar to attenuate these NH3 emissions has grown. This experiment was conducted to study the effects of using rice hull biochar pyrolyzed at three different temperatures of 250℃ (BP 4.6, biochar pH 4.6), 350℃ (BP 6.8), and 450℃ (BP 10.3) on the emission of ammonia from soil fertilized with urea. The emissions of NH3 initially increased as the experiment progressed but decreased after peaking at the 84th hour. The amount of emitted NH3 was lower in soil with biochar amendments than in that without biochar. Emissions amongst biochar-amended soils were lowest for the BP 6.8 treatment, followed in an ascending order by BP 10.3 and BP 4.6. Since BP 6.8 biochar with neutral pH resulted in the lowest amount of NH3 emitted, it can be concluded that biochar's pH has an effect on the emissions of NH3. The results of this study, therefore, indicate that biochar can abate NH3 emissions and that a neutral pH biochar is more effective at reducing gaseous emissions than either alkaline or acidic biochar.

• Structural Monitoring and Maintenance
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• v.11 no.3
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• pp.187-202
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• 2024

For the problems of high compressibility and low strength of peat soil formed by lake-phase deposition in Dianchi Lake, microbial-induced calcium carbonate deposition (MICP), phyto-urease-induced calcium carbonate deposition (EICP) and phyto-urease-induced calcium carbonate deposition combined with lignin (EICP combined with lignin) were used to reinforce the peat soil, the changes in mechanical properties of the soil before and after the reinforcement of the peat soil were experimentally investigated, and the effect and mechanism of peat soil reinforcing by the three reinforcing techniques were tested and analyzed using X-ray diffraction (XRD) and scanning electron microscope (SEM). The results show that: compared to the unreinforced remolded peat soil specimens, the unconfined compressive strength (UCS), cohesion and internal friction angle of the specimens reinforced by MICP, EICP and EICP combined with lignin techniques have been greatly improved, and the permeability resistance has been improved by two, two and three orders of magnitude, respectively; the different methods of reinforcing generate different calcium carbonate crystalline phases, with the EICP combined with lignin technique generating the most stable calcite, and the MICP and EICP techniques generating a mixed phase of calcite and spherulitic chalcocite. Analyses showed that for peat soil reinforcement, the acidic environment of peat soil inhibited the growth and reproduction of bacteria, EICP technology was superior to MICP technology, and the addition of lignin solved the defect of the EICP technology that did not have a "nucleation site", so EICP combined with lignin reinforcement was preferred for the improvement of peat soil.

• Korean Journal of Soil Science and Fertilizer
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• v.9 no.2
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• pp.77-81
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• 1976

On a newly reclaimed acidic soil, investigation was made to find out the influence of lime and phosphorus application by a large quantity on the uptake of zinc by corn and its distribution in leaves and stem, under a factorial combination with two levels of zinc, lime, and phosphorus with three kinds of soil texture. The results are summarized as following, 1. The concentration of zinc in stem reflected the zinc uptake status of corn better than the leaves. The concentration of zinc in stem responded clearly to the treatments of lime and zinc, while those of leaves tended to be constant regardless of the application of lime and zinc. 2. The zinc uptake was not improved by compost application though it increased the yield of corn significantly. 3. The application of lime for neutralization of soil with low level of phosphorus application affected the yield of dry matter differently among different soils, slight increase on sandy loam soil, slight decrease on loam soil, and significant decrease on clay loam soil. The yield decrease on clay soil is considered to be due to the decreased availability of applied phosphorus owing to the large amount of lime applied.

• Korean Journal of Microbiology
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• v.49 no.2
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• pp.184-190
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• 2013

Cave environment provides special ecosystems for evolution of lives distant from surface environments. We investigated bacterial and archaeal communities of wall biofilm obtained from of a volcanic cave (Daesubee) in Jeju, Republic of Korea. Bacterial and archaeal 16S rRNA genes were PCR-amplified and sequenced using pyrosequencing technologies. Unique prokaryotic communities with low diversities were observed. The main bacterial sequences (ca. 83% of total reads) were affiliated with Pseudonocardia mongoliensis of phylum Actinobacteria and clustered with clones obtained from various caves. Reflection of light on the wall surface of cave might be caused by formation of beads of water caused by hydrophobic filaments of actinobacterial colonies. Main archaeal sequences (ca. 65.7% of total reads) were related with those of I.1a-Associated group of phylum Thaumarchaeota. The sequences were related with that of Candidatus Nitrosotalea devanaterra which was known to oxidize ammonia under acidic condition (ca. pH 5.0). Nutrients leached through volcanic soils contribute formation of unique microbial communities of wall biofilm of cave Daesubee.

• The Korean Journal of Mycology
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• v.14 no.2
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• pp.109-119
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• 1986

The correlations between environmental influences on microorganisms in soil and its effects on disease development in ginseng field were studied to obtain some useful data for increasing ginseng production and effective preventive measures against the root rot caused by soil-borne pathogens. The diseased replanted ginseng fields were selected as the diseased field and the healthy plot in first planted field selected as control in three major Korean ginseng producing areas such as Kumsan, Goesan and Poonggi. The physicochemical characteristics of the soil were analyzed and microorganisms susceptible for root rot of ginseng, such as Fusarium spp. and general fungi were investigated for their population density in various soil conditions. Correlations between soil microbial populations and environmental factors were investigated. The numbers of Fusarium spp. propagules were abundant in fall in both soil conditions. The numbers of Fusarium spp. were 1.9 to 2.6 times higher in replanted field than first planted field except Goesan area. Relative ratio of Fusarium spp. to total fungi propagules in replanted field was 1.6 times higher in replanted field than first planted field indicating higher numbers of Fusarium spp. distributed in replanted field of soil. The numbers of propagules of total fungi were increased in June and July and there was no sensitive variation according to the temperature. There was no significant difference in vertical distributions of total fungi according to soil depth, while the total fungi were abundant in the surface layer and $10{\sim}15\;cm$ layer. The contents of organic matter and phosphate in healthy field were somewhat high, and phosphate/organic matter ratio and Mg contents were high in diseased field. All of the soils showed a weak acidic pH of 4.5 to 5.7. Soil moisture contents were increased during winter season, but did not show any significant changes during the growing periods, showing 24.6% in healthy field and 19.5% in diseased field respectively. Soil temperature was the highest in July and August and the lowest in January and February.