• Title/Summary/Keyword: Accessions

Search Result 484, Processing Time 0.022 seconds

Oil content and Fatty Acids Composition of 83 Groundnut (Arachis hypogaea L.) Genetic resources

  • Jae Eun Lee;Awraris Derbie Assefa;Young Jee Kim;Ae jin Hwang;Bich Saem Kim
    • Proceedings of the Plant Resources Society of Korea Conference
    • /
    • 2020.08a
    • /
    • pp.95-95
    • /
    • 2020
  • The groundnut (Arachis hypogaea L.), also known as peanut, is a high amount of good-quality vegetable oil in seeds cultivated worldwide. The aim of this study was to evaluate and analyze oil composition of 83 groundnut accessions collected from 7 countries include Korea and Philippines. Total oil contents were recovered by Soxhlet extraction and the fatty acid compositions were analyzed by using gas chromatography. Total oil contents of 83 groundnut accessions showed a significant variability among the entire domain of collections and rangerd from 44.59 to 57.58 %. The averages of palmitic and stearic acid were 11.36 and 3.39 % ranged from 8.77 to 13.65 %, and 1.88 to 7.22 %, respectively. Oleic and linoleic acid showed a wide variation which ranged from 40.32 to 61.67 %, and 22.54 to 41.99 %, respectively. Arachidic acid was ranged from 0.93 to 2.42 %. Significant negative correlation was observed between oleic and linoleic acid.

  • PDF

Identification of SNPs Related to 19 Phenotypic Traits Using Genome-wide Association Study (GWAS) Approach in Korean Wheat Mini-core Collection

  • Yuna Kang;Yeonjun Sung;Seonghyeon Kim;Changsoo Kim
    • Proceedings of the Korean Society of Crop Science Conference
    • /
    • 2020.06a
    • /
    • pp.120-120
    • /
    • 2020
  • Based on the simple sequence repeat (SSR) marker, a Korean wheat core collection were established with 616 wheat accessions. Among them, the SNP genotyping for the entire genome was performed using DNA chip array to clarify the whole genome SNP profiles. Consequently, a total of 35,143 SNPs were found and we re-established a mini-core collection with 247 accessions. Population diversity and phylogenetic analysis revealed genetic diversity and relationships from the mini core set. In addition, genome-wide association study (GWAS) was performed on 19 phenotypic traits; ear type, awn length, culm length, ear length, awn color, seed coat color, culm color, ear color, loading, leaf length, leaf width, seeding stand, cold damage, weight, auricle, plant type, heading stage, maturation period, upright habit, and degree of flag leaf. The GWAS was performed using the fixed and random model circulating probability unification (FarmCPU), which identified 14 to 258 SNP loci related to 19 phenotypic traits. Our study indicates that this Korean wheat mini-core collection is a set of germplasm useful for basic and applied research with the aim of understanding and exploiting the genetic diversity of Korean wheat varieties.

  • PDF

Population Genetic Structure and Marker - Trait Associations in a Collection of Traditional Rice (Oryza sativa L.) from Northern Vietnam

  • Ngoc Ha Luong;Le-Hung Linh;Kyu-Chan Shim;Cheryl Adeva;Hyun-Sook Lee;Sang-Nag Ahn
    • Proceedings of the Korean Society of Crop Science Conference
    • /
    • 2022.04a
    • /
    • pp.110-110
    • /
    • 2022
  • Rice is the world's most important food crop and a major source of nutrition for about two thirds of populations. Northern Vietnam is one of the most important centers of genetic diversity for cultivated rice. In this study, we determined the genetic diversity and population structure of 79 rice landraces collected from northern Vietnam and 19 rice accessions collected from different countries. In total, 98 rice accessions could be differentiated into japonica and indica with moderate genetic diversity and a polymorphism information content of 0.382. We also detected subspecies-specific markers to classify rice (Oryza sativa L.) into indica and japonica. Additionally, we detected five marker-trait associations and rare alleles that can be applied in future breeding programs. Most interestingly, analysis of molecular variance (AMOVA) found genetic differentiation was related to geographical regions with an overall PhiPT (analog of fixation index FST) value of 0.130. More emphasis was given to provide signatures and infer explanations about the role of geographical isolation and environmental heterogeneity in genetic differentiation among regions in landraces from northern Vietnam. Our results suggest that rice landraces in northern Vietnam have a dynamic genetic system that can create different levels of genetic differentiation among regions, but also maintain a balanced genetic diversity between regions.

  • PDF

Variation of Seed Characteristic, Oil Content and Fatty Acid Composition in Sunflower Germplasm (해바라기 유전자원의 종실특성과 지방함량 및 지방산조성 변이)

  • Lee, Yun-Ho;Song, Hang-Lin;Piao, Xiang-Min;Park, Kyeong-Ho;Nam, Sang-Young;Kim, In-Jae;Choi, Sung-Yeol;Jang, Young-Seok;Kim, Hong-Sig
    • KOREAN JOURNAL OF CROP SCIENCE
    • /
    • v.55 no.3
    • /
    • pp.245-252
    • /
    • 2010
  • The objective of this study was to obtain the basic informations on variability of germplasm and cultivation practice for the production of biodiesel in sunflower. A total of 275 accessions obtained from the National Agrobiodiversity Center (34 landraces from Korea, 219 and 22 introductions from America and other countries, respectively) were screened to evaluate variations of seed characteristics, oil content and fatty acid composition. Seed types were classified into 4 types (broad ovoid, narrow ovoid, rounded and elongated). The broad ovoid type was the highest proportion of 40.4%, while the elongated type was the lowest proportion of 5.0% among accessions. Also, the seed colors were classified into 4 colors (gray, brown, black and white). Gray and brown seed color showed the highest distribution and white seed color showed the lowest among accessions, respectively. Hundred and one liter seed weight ranged 2.9~15.5g and 178~439g with averages of 6.3g and 322.0g, respectively. Oil content ranged from 11.7% to 45.6% with an average of 25.5%. The frequency distribution of oil content showed the highest in range of 22~28% and the lowest in range of over 40%. Three promising accessions with higher oil content than 40.0% were IT031967, IT031970 and IT031965 introduced from America. Palmitic and stearic acid contents, saturated fatty acid, ranged 3.1~7.6% and 1.3~4.1% with averages of 4.7% and 2.2%, respectively, and a total content of saturated fatty acid ranged 5.4~9.4% with an average of 6.9%. Oleic and linoleic acid contents, unsaturated fatty acid, ranged 18.1~75.7% and 18.1~74.1% with averages of 55.2% and 38.0%, respectively. Five accessions, IT031831, IT031669, IT031895, IT031938 and IT031694, showed higher oleic acid content than 70%. A total content of unsaturated fatty acid ranged 89.6~94.8% with an average of 93.0%.

Comparison Analysis of Aromatic Compounds in the Aromatic Rice Germplasm by Gas Chromatography and Mass Spectrometry (Gas Chromatography-Mass Spectrometry에 의한 향미 유전자원의 방향성 화합물 비교분석)

  • Kim, Jeong-Soon;Cho, Jum-Rae;Gwag, Jae-Gyun;Kim, Tae-San;Ahn, Sang-Nag;Lee, Sok-Young
    • KOREAN JOURNAL OF CROP SCIENCE
    • /
    • v.54 no.1
    • /
    • pp.88-103
    • /
    • 2009
  • The volatile and semi-volatile compounds of 5 accessions of domestic scented and 25 accessions of introduced scented were extracted by solid phase microextraction (SPME) and analyzed by gas chromatographymass spectrum (GC-MS). A total of 156 volatile and semivolatile compounds were identified from 30 accessions of aromatic rice, including 32 alcohols, 25 acids, 25 ketones, 21 hydrocarbon, 18 esters, 16 aldehydes, 4 ethers, 5 amines, 2 phenols, 2 bases, and 8 miscellaneous compounds. By UPGMA/Neighbor-join tree analysis, the thirty accessions of aromatic rice could be classified into seven groups according to the major odor or aroma compounds. Group I included indica type of Basmati varieties. Group II and Group IV included japonica type introduced scented. Group III consisted only Hyangmibyeo1ho in domestic scented. Group V and Group VII included indica type of Basmati and non-Basmati varities. Group VI included four of domestic scented of seven accessions excepted Basmati6129, Basmati 6311, and Seratus Malam.

Comparison of the Agronomic Characteristics of Perilla (Perilla ocimoides L.) Collected from Korean and Chinese Jilim Province (한국과 중국 길림성 재래종 들깨의 작물학적 특성 비교)

  • Kim In-Jae;Kim Min-Ja;Lee Cheol-Hee;Yun Tae;Park Sung-Gue;Lee Woo-Young;Nam Sang-Young
    • Korean Journal of Plant Resources
    • /
    • v.18 no.1
    • /
    • pp.179-185
    • /
    • 2005
  • This study was conducted to evaluate the major agronomic characteristics Korean of 85 and Chinese Jilim Province of 5 local varieties of perilla at Chungbuk Agricultural Research and Extension Services in 2001. Perilla accessions examined were classified into three maturity groups, i.e, early, medium, and late maturity group of $19\;(23\%),\;57\;(67\%)$, and $9\;(10\%)$ accessions, respectively. The early and late maturity groups mainly consisted of collections from middle-northern area and southern area, respectively, while the medium group consisted of accessions from all over the country. But chinese Jilim collection wad all mediumgroup. Average 1,000-seed weight(TSW) was 2.7 g. TSW of the collection from Hamyang was the greatest a 3.9g, while the TSW of Pyungchang collection was the smallest as 1.7g, and most of collections produced medium and small seeds. Perilla accessions with greate 1,000-seed weight seemed to be belonged to the late maturity group. Chinese collection was 2.2 to 3.19g and overage was 2.6g in average. Accodingly TSW hadn't more variegation than Korean. Seed coat colors of gorilla accessions were dark brown$(30\%)$, brown$(55\%)$ and gray brown$(6\%)$, respectively. Among seed coat colors, brown color consisted of $91\%$. Chinese was dark brown$(20\%)$, brown$(80\%)$ in color. Positively correlated that stem height, the number of nodes, branches and flower clusters with Korean and Chinese collection, capsules per flower cluster and the length of flower cluster with Korean collection and 1,000-seed weight and maturing period, flower clusters, stem height and the number of nodes with Chinese collection. And negatively correlated that the number of capsules per flower cluster and 1,000-seed weight with Korean collection and the length of flower cluster, stem height, branches, the number of nodes and flower clusters with Chinese collection.

Comparison on Antioxidant Activity of Ethanolic Extracts of Chinese Matrimony Vine (Lycium chinensis M.) (구기자 유전자원의 에탄올 추출물의 항산화활성 비교)

  • An, Tae-Hwan;Lee, Suk-Young;Cho, Jin-Woong
    • KOREAN JOURNAL OF CROP SCIENCE
    • /
    • v.57 no.1
    • /
    • pp.22-28
    • /
    • 2012
  • This experiment was conducted to find out high antioxidant activity varieties of chinese matrimony from the 131 accessions which conserved at Cheongyang Gugija Experiment Station. The status of the 131 accessions were composed 21 of local varieties, 20 of introduced species and 90 of improved races. The anti-oxidant activity using DPPH and $IC_{50}$, 45 accessions out of 90 showed high activity in free radical scavenging ability as less than $200{\mu}g/m{\ell}$ in improved races, while nine and six accessions from the introduced species and local varieties, respectively. At the stem part, the highest three anti-oxidant varieties among 131 accessions are "C0148-94", "D0148-72" and "Cheongdae", while China collection 1 in leaf part. Since "Cheongdae" is the progeny from the "Cheongyang Jaerae 5" and "Myungan" and those two varieties, "C0148-94" and "D0148-72" are from the Myungan and Cheongdae, high anti-oxidant activity can be inherited in Chinese matrimony vine.

Excessive Water Tolerance Test by Waterlogging Treatments on the Indian Corn Accessions (침수처리를 통한 인도 수집 옥수수의 내습성 검정)

  • Jeon, Min Jae;Park, Min Jeong;Hur, Suel Hye;Min, Byung Whan
    • Journal of agriculture & life science
    • /
    • v.51 no.1
    • /
    • pp.35-43
    • /
    • 2017
  • This research was carried out to excessive water tolerance test among corn accessions collected from India to breed corn cultivars targeting India market. The corn accessions were 20 Inbred lines and cultivars from India as well as Korean cultivars Gwangpyungok and Chaloksusu. Excessive water tolerance test was done in the green house by immerging the pots containing corn seedlings for two weeks. Then, the plant heights were measured to compare the control plants that were not grown in the immerging state. The results showed that seven accessions of high tolerance in flooding; H2(92.9%), H18(88.8%), CN114A(98.1%), CN351A(94.3%), Super900M(95.3%), P3394(98.8%), 31N27(96.7%) in which the percent is comparison to the control plants. Whereas nine accessions showed high damage by immerging; H1(78.9%), H8(73.4%), H10(77.1%), H19(79.0%), H26(74.1%), H31(75.7%), H34(77.5%), H36(77.4%), H40(74.6%). However, the reduction on the contents of chlorophyll a, chlorophyll b, carotenoids in leaf revealed contrast results to the flooding tolerance. Particularly, H36($7.249{\mu}g{\cdot}mg^{-1}$) and H40($7.642{\mu}g{\cdot}mg^{-1}$) showed rapid reduction in the chlorophyll a content during the flooding treatment. Whereas two Indian commercial varieties 37N27($0.630{\mu}g{\cdot}mg^{-1}$) and P3394($1.208{\mu}g{\cdot}mg^{-1}$) showed slight reduction. The reduction of chlorophyll a and carotenoid contents was positively correlated during the excessive water stress.

Study on Waxy Maize Hybrid -III. Distribution of the Major Characteristics for the Collected Genetic Resources in Maize (교잡종 찰옥수수에 대한 연구 -III. 국내 옥수수 유전자원 수집종에 대한 주요 특성 분포)

  • Seo, Jung-Eun;Ju, Hyun-Min;Choi, Yun-Pyo;Hong, Bom-Young;Cho, Yang-Hee;Ju, Jung-Il;Ji, Hee-Chung;Lee, Hee-Bong
    • Korean Journal of Agricultural Science
    • /
    • v.34 no.2
    • /
    • pp.119-123
    • /
    • 2007
  • Germination ratio on the 300 collected genetic resources showed 80 to 100 percentage, but those of some accessions were very low as below 30 percentage. Early growth phase of most of these lines were very poor while some collected lines were very vigor. Range of stem height showed from 150 to 199cm, but that of some accessions showed below 100cm as five percentage and some of them was over 250cm as eight percentage. Number of tillers per plant appeared less one but some collected lines have two to three tillers per plant. In days to tasseling, some accessions showed more four per plant. Ear length of these accession showed above 60 percentage as 11 to 15cm, while that of some collected lines showed over 10 percentage as 16 to 20cm.

  • PDF

Genetic Relationship of Genus Rosa Germplasm and Genetic Diversity of Rosa rugosa in Korea (장미속 유전자원의 유전적 관계와 국내 해당화의 유전적 다양성)

  • Joung, Youn-Hwa;Kim, Seung-Tae;Kim, Gi-Jun;Lee, Ja-Hyun;Gi, Gwang-Yeon;Han, Tae-Ho
    • Horticultural Science & Technology
    • /
    • v.28 no.6
    • /
    • pp.1003-1013
    • /
    • 2010
  • Fifty-nine accessions of 23 species in genus Rosa were collected, and 15 accessions of Rosa rugosa were collected throughout 10 regions of Korea. Their genetic relationship was investigated by using morphological analysis and RAPD marker. The morphological analysis was measured for 7 quantitative and quantified for 4 qualitative traits. RAPD analysis obtained a total of 959 polymorphic bands by using twenty primers. Morphological analysis classified most according to the rose section system except for several species. The cluster analysis of genus Rosa based on RAPD data could identify the subgenus $Platyrhodon$ and $Eurosa$. The subgenus $Eurosa$ separated five sections; $Gallicanae$, $Cinnamomeae$, $Pimpinellifoliae$, $Synstylae$ and $Caninae$. Correlation analysis between morphological and RAPD analysis showed low significance ($r$ = 0.35). The accessions of R. rugosa belonged to the section $Cinnamomeae$ clustered into three groups at genetic distance ranging from 0.28 on the base of RAPD analysis. In conclusion, the genetic relationship of the genus Rosa was consistent to the previously reported rose section system, and domestic collections of $R.$ $rugosa$ were separated from 3 groups on the base of RAPD marker.