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Construction of Transformation Method for Streptomyces scabiei ATCC 49173 Producing Phytotoxin (식물독소를 생산하는 Streptomyces scabiei ATCC 49173의 형질전환법 구축)

  • Jang, Bo-Youn;Ha, Heon-Su;Choi, Sun-Uk
    • KSBB Journal
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    • v.25 no.2
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    • pp.167-172
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    • 2010
  • Streptomyces scabiei producing phytotoxin called thaxtomin, which cause scab disease on economically important crops such as potato. For molecular genetics study of S. scabiei an effective transformation method was established based on conjugal transfer from Escherichia coli ET12567 (pUZ8002) using a phiC31-derived integration vector, pSET152, containing oriT and attP fragments. The high frequency was obtained on MS medium containing 50 mM $MgCl_2$. In addition, the sequence and location of the chromosomal integration attB site of S. scabiei was identified for the first time in the strains producing thaxtomin by the southern blot analysis of exconjugants and the sequencing of plasmid containing DNA flanking the insertion sites from exconjugant chromosome. Similar to the case of Streptomyces species, a single phiC31 attB site of S. scabiei is present within an ORF encoding a pirin-homolog.

A Study on Outflow and Pollutant Loading in Nam River Dam Basins (남강댐 유역의 유출량과 오염부하량 연구)

  • Kim, Jong-Oh;Kim, Ok-Sun;Kim, Hong-Chul
    • Journal of Wetlands Research
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    • v.2 no.1
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    • pp.87-94
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    • 2000
  • The purpose of this study was to analysis the pollutant loading of Chin yang Reservoir according to the variation of outflow. Regression equation of the pollutant loading and outflow was represented as $L=a\;Q^b$ in which L = pollutant loading(kg/day), a and b = regression coefficient, and Q = outflow($m^3/day$). Regression coefficients ($R^2$) of Sanchung, Sinan and Changchon site was in range of 0.8376 to 0.9818. Therefore the pollutant loading was good correlated with outflow. Changchon site had minimum b value because outflow of pollutant was little compared with rainfall. The SS was the highest b value 1.621~1.7834 among water quality parameters because the pollutant loading of SS was much affected by outflow. Also, the pollutant loadings per area could be calculated and compared in case of the dry season, normal season and flood season. The pollutant loading in the normal and flood season except the dry season were higher in order of Sanchung, Sinan and Changchon site. Pollutant loading per area were higher in order of Sinan, Sanchung and Changchon site. When it compared with pollutant loading per area calculated using pollutant unit loading, T-N was much different each other.

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Analysis of antigenic sites on the VP4 of porcine rotavirus, Gottfried strain (돼지 로타바이러스(Gottfried 주)의 VP4 항원구조분석)

  • Song, Yun-kyung;Kim, Won-yong;Kang, Shien-young
    • Korean Journal of Veterinary Research
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    • v.41 no.3
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    • pp.343-350
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    • 2001
  • The neutralization epitopes of the outer capsid protein VP4 of a porcine rotavirus, Gottfried strain, were studied using neutralizing monocolonal antibodies(N-MAbs). Eight N-MAbs which are specific for the VP4 of Gottfried strain were used for analyzing the antigenic sites of VP4. Three different approaches were used for this analysis; i)testing the serological reactivity of each N-MAb against different G and P types of human and animal rotavirusese ii) analyzing N-MAb-resistant viral escape mutants and iii) performing nucleotide sequence analysis of the VP4 gene of each N-MAb-resistant viral escape mutant. From experimental results, at least four antigenic sites(I, II, III, and IV) were identified. Antigenic site I recognized by N-MAbs 24B9, 23G10, and 26A2 was separated from antigenic site II recognized by N-MAbs 30H5, 32B3, and 29B3. However, these antigenic sites were overlapped with antigenic site III recognized by N-MAb 21A1. The other antigenic site IV recognized by N-MAb 16D2 was separated from antigenic sites I, II, and III.

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A study on the Effectiveness of Web sites of Food Services in Korea (국내 외식업체의 웹사이트 효율성에 관한 연구)

  • 강경재
    • Culinary science and hospitality research
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    • v.6 no.1
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    • pp.123-149
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    • 2000
  • As a result of their web sites about 25 food services, it shows that only 20% of food services are conducting transactions online. As a whole food services in general have mastered the basics of setting up a web site, and it is revealed that some web sites with high average score are using flash s/w, which has a considerable interest in graphic. Family restaurant is the highest in average score and icecream is the lowest. The best individual site is Tonyromas site of Family restaurant sector, the second best site is TGI Friday's of the same Family restaurant sector, the third Pizzahut of pizza sector, and the fourth Lotteria site of Fast food sector. It is suggest that this preliminary study could be advanced by extending the sample size and a program of more extensive statistical analysis by devising. Also it is shows that it is possible for B2B transaction and B2C transaction to be conducted more actively It is suggested that Pizza(60%) and Icecream(40%) of food products which are small in size and easy to be ordered and delivered can be feasible and successful in transactions online. In conclusion, it is very important to keep the contents of web sites up-to-date and attractive to customers, and to establish several ways which can enable customers to interact with food services to induce a dialogue with customers, and it is necessary to introduce new technologies for specific differences of their own sites.

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The Flow rate estimation of CSOs using EC Data (전기전도도를 이용한 CSO의 유량 추정)

  • Choi, Weon-Suk;Song, Chang-Soo
    • Journal of Korean Society of Water and Wastewater
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    • v.25 no.5
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    • pp.751-757
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    • 2011
  • The monitoring technique based on electrical conductivity (EC) can provide researchers with some advantages in maintenance management and is cost-effective as compared with existing CSOs monitoring. In this study, the flow rate estimation using EC data was executed in two sites where storm overflow chamber had installed. In the result of A-site, R2 of second order multinomial between dilution ratio of EC and observed flow rate was showed the range of 0.68 ~ 0.77. And $R^{2}$ of B-site was 0.62 ~ 0.81. On the other hand, cumulative frequency of A-site was 43.4 ~ 52.2% in the relative error level of under 20%. And B-site was 10.1 ~ 46.5%. The flow rate estimation formula was improved through consideration of some parameters including antecedent dry days and rainfall duration. And difference between estimated flow rate and observed flow rate in total rainfall event was very small.

Does Abdominal Quilting Suture Prevent Seroma in TRAM Flap Breast Reconstruction? (횡복직근피판술을 이용한 유방재건술 시 상복부의 누빔 봉합이 장액종을 예방하는가?)

  • Lee, Min-Young;Lee, Taik-Jong
    • Archives of Plastic Surgery
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    • v.38 no.3
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    • pp.241-244
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    • 2011
  • Purpose: Seroma formation is still major complication of abdominal donor site after TRAM flap surgery in spite of various efforts to reduce seroma formation such as closed suction drain. We performed a clinical study, that quilting suture at abdominal donor site can prevent seroma formation. Methods: Between May 2002 and September 2008, we performed 600 breast reconstructions using a unilateral TRAM flap except patients who has smoking history or abdominal scar. We performed 300 breast reconstructions without quilting sutures (A: Experimental group) until January 06, and after then 300 reconstructions with quilting sutures (B: Control group). We compared total drain output (mL), time to drain removal (days), and donor site complications between two groups. Results: There were no statistical difference at BMI (p=0.28) and time to remove suction drain between two group. (A: 8.37, B: 9.69) (p=0.40) But, total drain output was reduced with quilting suture. (A: 432.5, B: 495.2) (p=0.005) And also complication rate was decreased, such as seroma formation, epigastric bulging. (A: 1%, B: 7%) (p=0.005) Conclusion: Quilting suture is a simple and reliable method to reduce seroma formation and abdominal donor site complication.

No Relevance of NF-${\kappa}B$ in the Transcriptional Regulation of Human Nanog Gene in Embryonic Carcinoma Cells

  • Seok, Hyun-Jeong;Kim, Young-Eun;Park, Jeong-A;Lee, Young-Hee
    • Development and Reproduction
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    • v.15 no.1
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    • pp.25-30
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    • 2011
  • Embryonic stem (ES) cells can self-renew maintaining the undifferentiated state. Self renewal requires many factors such as Oct4, Sox2, FoxD3, and Nanog. NF-${\kappa}B$ is a transcription factor involved in many biological activities. Expression and activity of NF-${\kappa}B$ increase upon differentiation of ES cells. Reportedly, Nanog protein directly binds to NF-${\kappa}B$ protein and inhibits its activity in ES cells. Here, we found a potential binding site of NF-${\kappa}B$ in the human Nanog promoter and postulated that NF-${\kappa}B$ protein may regulate expression of the Nanog gene. We used human embryonic carcinoma (EC) cells as a model system of ES cells and confirmed decrease of Nanog and increase of NF-${\kappa}B$ upon differentiation induced by retinoic acid. Although deletion analysis on the DNA fragment including NF-${\kappa}B$ binding site suggested involvement of NF-${\kappa}B$ in the negative regulation of the promoter, site-directed mutation of NF-${\kappa}B$ binding site had no effect on the Nanog promoter activity. Furthermore, no direct association of NF-${\kappa}B$ with the Nanog promoter was detected during differentiation. Therefore, we conclude that NF-${\kappa}B$ protein may not be involved in transcriptional regulation of Nanog gene expression in EC cells and possibly in ES cells.

Characterization of Site-Specific Recombination by the Integrase MJ1 from Enterococcal Bacteriophage ${\Phi}FC1$

  • Park, Mi-Ok;Lim, Ki-Hong;Kim, Tae-Hyung;Chang, Hyo-Ihl
    • Journal of Microbiology and Biotechnology
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    • v.17 no.2
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    • pp.342-347
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    • 2007
  • Bacteriophage ${\Phi}FC1$ integrase (MJ1) was previously shown to perform a site-specific recombination between a phage attachment site (attP) and a host attachment site (attB) in its host, Enterococcus faecalis, and also in a non-host bacterium, Escherichia coli. Here, we investigated biochemical features of MJ1 integrase. First, MJ1 integrase could perform in vitro recombination between attP and attB in the absence of additional factors. Second, MJ1 integrase interacted with att sites. Electrophoretic mobility shift assays and DNase I footprinting revealed that MJ1 integrase could efficiently bind to all the att sites and that MJ1 integrase recognized relatively short sequences (${\sim}50bp$) containing an overlapping region within attB and attP. These results demonstrate that MJ1 integrase indeed catalyzes an integrative recombination between attP and attB, the mechanism of which might be simple and unidirectional, as found in serine integrases.

Formation Condition and Ferroelectric Properties of Niobate Tetragonal Tungsten Bronze (TTB) Type Ferroelectrics

  • Naoki Wakiya;Wang, Ju-Kai;Kazuo Shinozaki;Nobuyasu Mizutani
    • The Korean Journal of Ceramics
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    • v.6 no.4
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    • pp.380-384
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    • 2000
  • Crystal structure of $Ba_5-5X$Y$_10/3$Nb$_10$O$_30$ was tried to determine by Rietveld analysis using powder X-ray diffraction data. This compound has tetragonal tungsten bronze (TTB) structure with general formula, (Al)$_2$(A2)$_4$(B1)$_2$(B2)$_8$(O1)$_8$(O2)$_8$(O3)$_4$(O4)$_2$(O5)$_4$(O6)$_4$. However, it was difficult to determine the distribution of Ba and Y in Al and A2 sites by the analysis only. Combination of Rietveld analysis and site potentials calculation as well as lattice energy calculations helped to determine the distribution. As the result, it was clarified that $Ba^2+$ cations occupy A2 (pentagonal tunnel site) and $Y^3+$ cations occupy Al (cubic site). The distribution of cations at each site coincides with the distribution estimated by the difference of ionic radii. This supports the formation condition of TTB which was proposed in our previous report. $Ba_5-5X$Y$_10X/3$Nb$_10$O$_30$ shows ferroelectric characteristics. In this compound, remanent polarization decreases slightly with the composition X. On the other hand, the result of crystal structure determination reveals that atomic positions along c-axis for A1, A2, B1 and B2 cations are also decreased with the composition X. This would suggest that the dependence of remanent polarization on composition X is derived by the dependence of atomic coordinates on composition X.

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