• Korean Journal of Microbiology
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• v.52 no.3
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• pp.313-318
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• 2016

Bacteria in the viable but nonculturable (VBNC) state fail to produce colonies on routine bacteriological media, but are still alive in the state of very low metabolic activity. The aim of the present study was to induce the VBNC state of the Edwardsiella tarda using sea water microcosm under starvation conditions at $10^{\circ}C$ and to investigate resuscitation of the VBNC cells in temperatures changed from 10 to $25^{\circ}C$, with and without additives. E. tarda entered into the VBNC state within about 42-84 days of incubation in the microcosm. Throughout this period, the total cell counts as determined using acridine orange direct counting remained near the original inoculum level of ${\sim}10^8cells/ml$. The live cell counts measured with direct viable counting, on the other hands, declined to ${\sim}10^4cells/ml$. When the VBNC cells were incubated with addition of yeast extract, fish muscle extract or serum at $25^{\circ}C$, the ratios of resuscitated samples were 37%, 23%, and 37%, respectively. The characteristics of resuscitated E. tarda were consistent with those of the original E. tarda. When the resuscitated E. tarda were intraperitoneally injected into olive flounders, all fishes died within 5 days, indicating that the VBNC E. tarda might retain its pathogenic potential. Therefore, E. tarda under starvation conditions in the winter enter into the VBNC state and the VBNC E. tarda cells resuscitated at summer and autumn seawater temperature are considered to be pathogen continuously to olive flounder on the southern coast of Korea.

• Journal of Life Science
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• v.26 no.2
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• pp.198-203
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• 2016

This study aimed to isolate a novel agarase-producing marine bacterium and characterize its agarase, as agarases are known to produce biofunctional agarooligosaccharides or neo-agarooligosaccharides. A novel agar-degrading bacterium, SH-2, was isolated from the seawater of Namhae in Gyeongnam Province, Korea, and cultured in Marine agar 2216 medium. The 16S rRNA gene sequence represented 99% identity with that of the members of the Marinomonas genus; hence, the isolated bacterium was named Marinomonas sp. SH-2. The crude agarase was prepared from a culture medium of Marinomonas. sp SH-2, and exhibited maximum agarase activity at 170.2 units/l. The optimum conditions were pH 6.0 and 30℃ in 20 mM Tris-HCl buffer. The agarase activity of the bacterium was highly elevated from 20℃(42% relative activity) to 30℃(100%), and 82% activity was shown at 40℃. Its relative activities were less than 40% at over 40℃ after a 0.5 hr exposure. Relative activity was 100% at pH 6.0, while it was 72% and 48% at pH 5.0 and pH 7.0, respectively. The enzyme from Marinomonas sp. SH-2 degraded agarose to neoagarohexaose and neoagarotetraose, indicating that the enzyme is β-agarase. Thus, Marinomonas sp. SH-2 and its enzyme could be practical for applications in food, cosmetic, and medical research.

• Journal of the Korean Society of Fisheries and Ocean Technology
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• v.55 no.3
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• pp.217-232
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• 2019

It was turned out by shrimp beam trawl monthly survey from March, 2015 to February, 2016 that different species composition and abundance of the fish assemblages in Sacheon Bay and coastal waters off Namhae, Korea were compared. As a result of monthly measured sea temperature and salinity of Sacheon Bay and coastal waters off Namhae, sea temperature of both areas was changed seasonally; however, differences in sea temperature occurred during certain periods depending on the region. Salinity was generally low in Sacheon Bay affected by fresh water, and both areas was low in summer and high in winter. A total of 73 species representing 37 families were collected in Sacheon Bay. The dominant fish species in terms of numbers and biomass were Liparis tanakae, $23,077inds./km^2$, $332.1kg/km^2$. A total of 91 fish species representing 49 families were collected in coastal waters off Namhae. The dominant fish species in terms of numbers were Leiognathus nuchalis, $139,683inds./km^2$ and biomass were Chelidonichthys spinosus, $1,078.6kg/km^2$. Analysis of dendrogram of the clustering showed that Sacheon Bay and coastal waters off Namhae were distinctive featured (global R = 0.691, p = 0.017). And except of summer season (July-October), there was a distinctive feature seasonally (global R = 0.844, p = 0.001). The fish species that appeared in common in both areas, where fish species caught in Sacheon Bay, an important inner bay,were smaller than those caught in coastal waters off Namhae appeared. It presented that Sacheon Bay plays a more important role in spawning and nursery ground for fisheries resource than coastal waters off Namhae, Korea.

• Journal of the Korean Society of Marine Environment & Safety
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• v.25 no.2
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• pp.229-236
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• 2019

The effects of temperature, salinity and irradiance on the growth of dinoflagellate Alexandrium affine were examined. A maximum specific growth rate ($0.69day^{-1}$) was observed with a combination of $25^{\circ}C$ and 25 psu. Optimal growth (80 % of the maximum specific growth rate) was obtained at $20-26^{\circ}C$ with salinities of 20-35 psu. The results indicated that A. affine is relatively stenothermal of given high water temperature and is a euryhaline species. The irradiance-growth curve found can be described as ${\mu}=0.75(I-4.25)/(I+65.47)$. The compensation photon flux density ($I_c$) and half-saturation photon flux density ($K_I$) were $4.25{\mu}mol\;m^{-2}s^{-1}$ and $57.0{\mu}mol\;m^{-2}s^{-1}$, respectively. In conclusion, A. affine has advantageous physiological characteristics that enable it to be a dominant species in coastal areas with high water temperature and a large salinity gradient, in spite of relatively low irradiance.

• Journal of Life Science
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• v.32 no.10
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• pp.778-783
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• 2022

This study isolated a new agarase-producing bacterium and characterized its agarase. A new agar-degrading strain was isolated from the seashore of Namhae in Gyeongnam province, Korea, and was purely cultured using the Marine Agar 2216 media. The isolated bacterium was identified as Simiduia sp. SH-2 after 16S rRNA gene sequencing. The crude agarase was obtained from the culture medium of the Simiduia sp. SH-2 strain, and the agar-degrading activity was measured. The highest level of activity of the Simiduia sp. SH-2-derived agar-degrading enzyme was 625 U/l. Agar degradation activity was most significant at 40℃ and pH 7.0. Compared to the activity at 40℃, the relative activity was 31% at 20℃ and 71% at 30℃. Compared to the activity at pH 7.0, the relative activity was 94% and 89% at pH 6.0 and pH 8.0, respectively. Residual activity was greater than 96% after exposure to 20℃ and 30℃ for 2 hr and more than 49% after exposure to 40℃ for 2 hr. Simiduia sp. SH-2 was identified as a strain producing β-agarase that creates neoagarooligosaccharides, such as neoagarotetraose and neoagarohexaose. Therefore, the Simiduia sp. SH-2 strain and its β-agarase are expected to be useful functional material producers in the food, cosmetic, and pharmaceutical industries.

• Korean Journal of Environmental Biology
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• v.37 no.4
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• pp.707-718
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• 2019

Ecklonia cava Kjellman, which has recently gained popularity due to the spread of farming techniques, is expected to be developed in various varieties in the future. There exist increased needs for research on the basis of natural populations and inter-regional morphological variations. We compared the morphology of the aquaculture and natural populations from 16 coastal areas in Korea. The 18 traits found suitable for distinguishing varieties were selected from 14 measurement traits and 4 ratios related to the main morphology and characteristics of primary blade, secondary blade, and stipe. In the cluster analysis, Janggil (E4) and Sorok (S7) showed significant differences from those of the same coastal region. Two groups, including Suyou (Q6, Q8, and Q10) which was the second year of farming, of the rest of the populations from East sea and southern coast were distinguished. Three populations of Jeju were divided into a regional group. In the principal component analysis (PCA), a large number of populations from East sea and Southern coast appeared in the center with aquaculture populations. PC1 and PC2 associated with traits of secondary blade index, stipe length and diameter, stipe length/primary blade length, primary blade length and width, secondary blade number, secondary blade length and width, divided E4, S7 and populations of Jeju region. As a result, the 18 characters of this study were found to be useful as criteria for discrimination of populations with significant differences in each coastal region, and these populations were expected to be candidates for new varieties.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.24 no.3
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• pp.177-184
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• 1991

We have investigated geographical distribution and physico-chemical properties of water masses or water types at mid-bottom depth in the neighbouring sea of Cheju Island in August 1986. In 50m layer the Yellow Sea Bottom Cold Water(YSBCW) below $12^{\circ}C$ was observed in the northwestern area of Cheju Island, while the Tsushima Warm Water(TWW) with relatively high temperature$(>16^{\circ}C)$ and salinity more than 34.0 in its southeastern area extended as far as the coast of about 15km. Also, 50m layer at the outside stations of its southwestern area indicated relatively cold water temperature$(11-30^{\circ}C)$, probably due to southward transport of the Yellow Sea Bottom Cold Water(YSBCW . The Yellow Sea Warm Water(YSWW), the mixed water of the YSBCW and the TWW, ranged $13^{\circ}C$ to $16^{\circ}C$ in water temperature and was appeared mainly in the coastal and intermediate area of Cheju Island. And the relatively cold water in the southwestern area and the Tsushima Warm Water were more extensively distributed in 50m layer than the deeper layer. Horizontal distributions of nitrate and phosphate showed a pattern similar to that of water temperature. As it were, the Yellow Sea Bottom Cold Water had the highest concentration of nutrients, while southwestern outside stations had the lowest nutrient contents. Especially, the concentration of nitrate in the latter was remarkably low compared with the value at the other stations. It may be attributed to intensive vertical mixing by collision of the northward driven Tn with the southward driven YSBCW. Also, it was particular that the Tsushima Warm Water indicated relatively high silicate content corresponding to that of the Yellow Sea Bottom Cold Water. Based on the data of $\Delta Si/\Delta P$ ratio, it seems that the mid-bottom waters in this study area are younger than the surface or intermediate water in the Korean East Sea.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.32 no.1
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• pp.30-36
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• 1999

Seasonal variation in lipid classes and fatty acid compositions of total lipid (TL) of 12 species of Korean fish muscle, which caught off Tongyeong coast of the Southern Sea (Nam-Hae) from Mar, 1995 to Feb. 1996, was studied. Triglyceride (TG) and free sterol (ST) were prominent lipid classes of neutral lipid in all fish species. The percent of TG rose with increasing TL content by season, but that of ST fell. The prominent lipid classes of phospholipid were phosphatidylcholine (PC) and phosphatidylethanolamine (PE), percents of PC and PE were higher in the fish containing lower lipid. The prominent fatty acids in all fish species were 16:0 ($19.5\pm1.99\%$) 22:6 (n-3) ($16.6\pm7.46\%$), 18:1 (n-9) ($15.8\pm8.39\%$), 20:5 (n-3) ($8.46\pm3.70\%$), 16:1 (n-7) ($7.06\pm3.08\%$) and 14:0 ($3.80\pm2.15\%$). With increasing TL content by season, the percent of monounsaturated fatty acids (MUFA) such as 18:1 (n-9) and 16:1 (n-7) rose, but those of polyunsaturated fatty acids (PUFA) such as 22:6 (n-3) and 20:5 (n-3) fell. There was a negative correlation between the percent of the MUFA and the PUFA of total fatty acids. However, the PUFA content increased as the TL content increased by season. On the other hand, the percent of 16:0 almost unchanged by seasonal variation of lipid content.

• The Sea:JOURNAL OF THE KOREAN SOCIETY OF OCEANOGRAPHY
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• v.8 no.2
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• pp.111-120
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• 2003

To describe dinoflagellate cysts from Gwangyang Bay, surface sediment samples were collected at 20 sites by the TFO core sampler on 24 August 2001, in coupled with a phytoplankton investigation by surface seawater sampling. More than 17 genera, 36 species of dinoflagellate cysts were Identified from the sediment samples of Gwangyang Bay, consisting of 14 species of gonyaulacoid, 14 species of protoperidinioid, 3 species of diplopsalid, 2 species of gymnodinioid, 1 species of tuberculodinioid and calciodinellid, respectively. Cyst concentrations in Gwangyang Bay varied from 115 to 2,188 cysts/g, and generally increased toward a western part of the study area. The highest cyst concentration was observed at St. 11 located in the northwestern region with 11 genera and 19 species(2,188 cysts/g), while the lowest value with 6 genera and 9 species(115 cysts/g) was observed at St. 3 located in the center of the study area. The predominant dinoflagellate cyst was Spiniferites bulloideus, followed by Alexandrium sp., Brigantedinium simplex and S. delicatus. The motile forms of eight dinoflagellate cysts recorded in the sediment samples were also observed in the seawater: Polykrikos swartzii/kofoidii complex, Scripssiella trochoidea, Protoperidinium claudicans(cyst name: Votadinium spinosum), P. pentagonum(: Trinovantedinium capitatum capitatum), P. conicum(: Selenopemphix quanta), P. leonis(: Quinquecuspis concretum), P. conicoides(: Brigantedinium simplex), Gonyaulax spp.(: Spiniferites spp.). In this study, heterotrophic dinoflagellate cysts show the highest concentration at St. 6 where the highest density of diatoms simultaneously observed from surface water sample. This result suggests that the grazing of heterotrophic dinoflagellates on the diatoms in high concentration caused the higher concentration of heterotrophic dinoflagellate cysts.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.34 no.1
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• pp.57-69
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• 2001

The chemical, elemental and biochemical components of the suspended particulate matter (SPM) were investigated in order to quantify particulate organic matter (POM) and assess diet quality for suspension feeders in the southern coastal bay systems of Korea where the marine farming of the suspension feeders are most active, The intense field observation program was carried out seasonally in the three coastal bay systems of Chinhae, Gosung and Kangjin bays, The SPM was characterized as collective properties of organic carbon (POC), nitrogen (PON), phosphorus (PP) and more refined collective properties of protein (PPr), carbohydrate (PCHO) and chlorophyll a (Chl a) compound. Although the three coastal bays are regarded as phytoplankton based ecosystem, the SPM is not composed entirely with phytoplankton cells. Due to the shallow water depth, resuspension of bottom sediment contributes significantly to some of the regions. Therefore, concentration of SPM in the surface water did not co-vary with Chl a or PPr, PCHO. In general, temporal variation of POC, PON and Chl a contents in seawater were closely associated with phytoplankton biomass in the three coastal bays, However, PPr and PCHO contents in seawater were higher in Chinhae bay than in Gosung and Kangjin bays and Chl a PPr-N ratio was higher in Chinhae bay than in Kosung and Kangjin bays, since Chinhae bay is more eutrophicated than other bays. Average C : N ratios from regressions of POC and PON of SPM were 6.6, 6.6 and 5.0 in Chinhae, Gosung and Kangjin bays, respectively. SPM in Chinhae and Gosung bays appears to be made of largely phytoplankton cells and SPM in Kangjin bay appears to be contributed from the bacterial biomass due to the shallow water depth. N : P ratios from regressions of PON and PP of SPM were 10.8 and 14.7 in spring, and 18.2 and 24.6 in Chinhae and Gosung bays, respectively. With respect to the hypothetical Redfield molecule, phytoplankton appears to be limited by the lack of N and f in spring and summer, respectively, in the two bays, In Kangjin bay, N : P ratios from regressions of PON and PP of SPM were varied from 6.3 to 12.8 throughout the year. The low N : P ratio with resepct to the hypothetical Redfield molecule, phytoplankton growth appears to be limited by the lack of N-nutrients.