• Title/Summary/Keyword: 전사체 반응

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Characterization of Four cDNA Clones Expressed in Late Root Nodules of Canavalia lineata (해녀콩의 후기 뿌리혹에서 발현되는 4개의 cDNA 특성)

  • 안정선
    • Journal of Plant Biology
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    • v.38 no.4
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    • pp.381-388
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    • 1995
  • Four cONA clones expressed in late root nodules of Canavalia lineata were isolated by differential screening using total RNA from uninfected roots, Clb1 and uricase II cONAs as competitors and named Cnod1, Cne2, Cne3 and Clb2, respectively. Cnod1, hybridized to 1450 nt mRNA, was highly homologous to cysteine proteinase gene from rice and showed nodule-specific expression, especially in late nodules. Cne2, hybrdized to 900 nt mRNA, was moderately homologous to Expressed Sequence Tag of rice and expressed mainly in root nodules. Its expression was increased at 13 OAI and subsequently remained at the same level. Cne3, hybridized to 1700 nt and 1400 ot mRNAs, was highly homologous to tonoplast membrane intrinsic protein TRG31 gene from pea and was expressed strongly in roots and nodules, but weakly in leaves. Temporal expression pattern of Cne3 was coincided with the life cycle of root nodules. Clb2, hybridized to 800 nt mRNA, was expressed from 8 OAI, amplified at 13 DAI and remained steady thereafter.eafter.

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Effect of methyl jasmonate on the glucosinolate contents and whole genome expression in Brassica oleracea (유묘기 양배추류에서 메틸자스모네이트에 의한 글루코시놀레이트 함량 변화 및 전사체 발현 분석)

  • Lee, Jeongyeo;Min, Sung Ran;Jung, Jaeeun;Kim, HyeRan
    • Journal of Plant Biotechnology
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    • v.46 no.3
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    • pp.189-204
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    • 2019
  • In this study, we analyzed the changes in glucosinolate content and gene expression in TO1000DH3 and Early big seedling upon methyl jasmonate (MeJA) treatment. Analysis of glucosinolate contents after MeJA treatment at $200{\mu}M$ concentration showed that the total glucosinolate content increased by 1.3-1.5 fold in TO1000DH3 and 1.3-3.8 fold in Early big compared to those before treatment. Aliphatic glucosinolates, progoitrin and gluconapin, were detected only in TO1000DH3, and the changes in the content of neoglucobrassicin were the greatest at 48 hours after MeJA treatment in TO1000DH3 and Early big. The transcriptomic analysis showed that transcripts involved in stress or defense reactions, or those related to growth were specifically expressed in TO1000DH3, while transcripts related to nucleosides or ATP biosynthesis were specifically expressed in Early big. GO analysis on transcripts with more than two-fold change in expression upon MeJA treatment, corresponding to 12,020 transcripts in TO1000DH3 and 13,510 transcripts in Early big, showed that the expression of transcripts that react to stimulus and chemical increased in TO1000DH3 and Early big, while those related to single-organism and ribosome synthesis decreased. In particular, the expression increased for all transcripts related to indole glucosinolate biosynthesis, which is associated with increase in glucobrassicin and neoglucobrassicin contents. Upon MeJA treatment, the expression of AOP3 (Bo9g006220, Bo9g006240), TGG1 (Bo14804s010) increased only in TO1000DH3, while the expression of Dof1.1 (Bo5g008360), UGT74C1 (Bo4g177540), and GSL-OH (Bo4g173560, Bo4g173550, Bo4g173530) increased specifically in Early big.

Assessment of the Specificity of A Hybridization of Surfactant Protein A by Addition of Non-specific Rat Spleen RNA (Surfactant Protein A mRNA을 이용한 유전자 재결합 반응에서 비특이성 RNA의 첨가에 의한 특이성 검정)

  • Kim, Byeong Cheol;Kim, Mi Ok;Kim, Tae-Hyung;Sohn, Jang Won;Yoon, Ho Joo;Shin, Dong Ho;Park, Sung Soo
    • Tuberculosis and Respiratory Diseases
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    • v.56 no.4
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    • pp.393-404
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    • 2004
  • Background : Nucleic acid hybridization has become an essential technique in the development of our understanding of gene structure and function. The quantitative analysis of hybridization has been used in the measurement of genome complexity and gene copy number. The filter hybridization assay is rapid, sensitive and can be used to measure RNAs complementary to any cloned DNA sequence. Methods : The authors assessed the accuracy, linearity, correlation coefficient and specificity of the hybridization depending on the added dose(0, 1, 5, and $10{\mu}g$) of non-specific rat spleen RNA to hybridization of surfactant protein A mRNA. Filter hybridization assays were used to obtain the equation of standard curve and thereby to quantitate the mRNA quantitation. Results : 1. Standard curve equation of filter hybridization assay between counts per minute (X) and spleen RNA input (Y) was Y=0.13X-19.35. Correlation coefficient was 0.98. 2. Standard curve equation of filter hybridization assay between counts per minute (X) and surfactant protein A mRNA transcript input (Y) was Y=0.00066X-0.046. Correlation coefficient was 0.99. 3. Standard curve equation of filter hybridization assay between counts per minute (X) and surfactant protein A mRNA transcript input (Y) after the addition of $1{\mu}g$ spleen RNA was Y=0.00056X-0.051. Correlation coefficient was 0.99. 4. Standard curve equation of filter hybridization assay between counts per minute (X) and surfactant protein A mRNA transcript input (Y) after the addition of $5{\mu}g$ spleen RNA was Y=0.00065X-0.088. Correlation coefficient was 0.99. 5. Standard curve equation of filter hybridization assay between counts per minute (X) and surfactant protein A mRNA transcript input (Y) after the addition of $10{\mu}g$ spleen RNA was Y=0.00051X-0.10. Correlation coefficient was 0.99. Conclusions : Comparison of cpm/filter in a linear range allowed accurate and reproducible estimation of surfactant protein A mRNA copy number irrespective of the addition dosage of non-specific rat spleen RNA over the range $0-10{\mu}g$.

Fabrication of membrane electrode assemblies by low temperature decal methods (저온 전사법을 이용한 고성능 MEA 제조)

  • Cho, Jae-Hyoung;Kim, Jang-Mi;Prabhuram, Joghee;Hwang, Sang-Youp;Ahn, Dong-June;Ha, Heung-Yong;Kim, Soo-Kil
    • 한국신재생에너지학회:학술대회논문집
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    • 2008.10a
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    • pp.37-39
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    • 2008
  • 본 연구에서는 저온 데칼 전사법을 이용하여 막 전극 접합체(Membrane Electrode Assembly, MEA)를 제조하였다. 제조된 MEA는 직접 메탄올 연료 전지(Direct Methanol Fuel Cell, DMFC)를 이용하여 성능 테스트를 하였다. 저온 데칼 전사법은 $140^{\circ}C$의 낮은 온도에서 촉매 층을 데칼 기판에서 멤브레인으로 전사시키고, 전사된 촉매 층의 표면에 형성되는 것으로 알려진 이오노머 스킨 층의 형성을 막기 위해 이오노머/촉매/카본/기판의 구조로 되어 있는 데칼 기판을 사용한다. 저온 데칼 전사법으로 제조 된 카본 층이 있는 MEA의 DMFC 성능이 카본 층이 없이 데칼 전사법으로 제조된 MEA나 전통적인 고온 데칼 전사법으로 제조된 MEA, 또는 직접 스프레이 코팅법으로 제조된 MEA의 성능보다 높게 나온 것을 알 수 있다. 저온 데칼 전사법으로 제조된 MEA의 DMFC 성능이 향상된 것은 촉매 층 위에 이오노머 스킨이 형성되지 않아 반응물의 확산이 원활하게 이루어지기 때문이다. 이를 위한 특성 분석으로 EIS, CV를 측정하였다.

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Antigen Receptor-Mediated Induction of Cytolytic T cell-Specific Transcripts Expression (항원수용체자극에 의한 Cytolytic T cell 특이전사체 표현유도)

  • Kim, Gwan-Shik;Lancki, David W.;Kwon, Byoung-Se
    • The Korean Journal of Pharmacology
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    • v.23 no.1
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    • pp.45-49
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    • 1987
  • Employing the approach to isolate the genes expressed preferentially in cytolytic T cell (CTL) but not in other types of cell, 3 CTL-specific cDNAs were recently cloned. To characterize these cDNA clones in relation to CTL activation, their expression pattern after T cell antigen receptor (TCR) or interleukin 2 (IL-2) stimulation were investigated by RNA blot analysis of cloned CTL L3 cells. Transcripts level of two cDNA clones were markedly elevated by TCR stimulation but not by IL-2. In addition, transcripts expression of both clones were abrogated by cyclosporin A treatment. These results indicated that gene activation mediated by TCR is distinct from that mediated by IL-2 and imply that those two unidentified cDNA clones are related to TCR-mediated, IL-2-independent but cyclosporin A-sensitive pathway for CTL activation.

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Fabrication of SOFC cell by transcription-method (전사법을 이용한 SOFC Cell 제작 및 출력특성)

  • Koo, JaBin;Choi, ByeongHyeon;Ji, MiJeong;An, YongTae;Hwang, HaeJin
    • 한국신재생에너지학회:학술대회논문집
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    • 2011.11a
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    • pp.91.1-91.1
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    • 2011
  • 고체산화물 연료전지(Solid Oxide Fuel Cell이하 SOFC)는 연료가 갖는 화학에너지를 연소과정 없이, 공기와 H2, CO, CH4와 같은 환원성 가스를 공급받아 $600{\sim}1000^{\circ}C$에서 전기화학적 반응을 통하여 직접 전기를 얻는 방식이다. SOFC는 $700^{\circ}C$ 이상의 고온에서 고체산화물이 연료와 공기가 반응하여 전기와 열을 동시에 생산하기 때문에 carnot cycle의 제한을 받지 않아 발전효율이 40% 이상으로 고효율이고, NOx 및 SOx를 배출하지 않아 무공해이며, moving parts가 없어 소음이 나지 않고, 건설과 증설이 지역이나 기후 조건에 제약 없이 용이하고, 다양한 용량이 가능하며, 고가의 백금 촉매를 사용하지 않으며, 수소, 석탄가스, 천연가스 등의 연료를 사용할 수 있는 장점이 있음, 또한 다향한 형태로 제작할 수 있으며 전해질이 고체에서 전해질 손실 및 보충에 문제가 없고 타 연료전지에 비해 개질기가 필요 없어 발전시스템이 간단하고 경량화가 가능하다. 전사법은 paste를 제작하여 전사용지에 Screen printing하여 건조 후 coating하는 방법으로 기존의 여러 coating 방법보다 제작이 용이하고 소재의 크기, 두께조절이 간편하며, 구성층의 표면조도나 굴곡에 대응이 용이한 방법이다. 본 실험에서는 paste 제조, 전사법을 이용하여 Anode, AFL, Electrolyte, CFL, Cathode전사지를 제작하고 이를 세라믹 평관형 지지체에 변수로 두께 조건별 Coating 한 후 $1400^{\circ}C$ 소결을 진행하여 SEM 분석으로 미세구조 관찰, 출력특성 및 Impedance을 확인하였다.

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Regulation of Chicken FABP4 Transcription by Toll-Like Receptor 3 Activation in DF-1 Cells

  • Jae Rung So;Sujung Kim;Ki-Duk Song
    • Korean Journal of Poultry Science
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    • v.50 no.4
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    • pp.283-291
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    • 2023
  • Long-chain fatty acids (LCFAs) are vital in cellular compartments, primarily regulating lipid metabolism. Fatty Acid-Binding Proteins (FABPs) facilitate LCFA transport, lipid synthesis, storage, and act as signaling molecules influencing various pathways, including inflammation. FABP4, in particular, is linked to vascular and cardio-related diseases, and it plays a role in macrophage-mediated inflammatory responses. Previous studies have identified FABP4 as not only a representative biomarker for lipogenesis but also as having correlations with immune responses. This study aims to investigate the regulation of the chicken FABP4 (chFABP4) gene by toll-like receptor 3 (TLR3) activation and determine the signaling pathways that are involved in chFABP4 transcriptional regulation. We analyzed the transcriptional regulation of chFABP4 in TLR3-stimulated DF-1 cells. The results showed that chFABP4 was up-regulated upon stimulation with polyinosinic-polycytidylic acid (PIC), a TLR3 ligand. Notably, chFABP4 transcription was independently regulated in the NF-κB signaling pathway. It was up-regulated in p38 inhibition, demonstrating that the p38 signaling pathway might suppress the transcription of chFABP4 within TLR3-activated DF-1 cells. In contrast, chFABP4 expression was down-regulated in JNK signaling pathway inhibition, suggesting the positive regulation of JNK signaling pathway for chFABP4 transcription in DF-1 cells in response to TLR3 activation, consistent with findings in macrophages. MEK pathway inhibition resulted in a similar regulation to NF-κB signaling. These results suggest that each MAPK contributes differentially to the transcriptional regulation of chFABP4 by in DF-1 cells in response to TLR3 activation.

Analysis of Gene Expression in Larval Fat Body of Plutella Xylostella Under High Temperature (고온에서 배추좀나방 유충 지방체의 유전자 발현 변화 분석)

  • Kim, Kwang Ho;Lee, Dae-Weon
    • Korean Journal of Environmental Agriculture
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    • v.37 no.4
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    • pp.324-332
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    • 2018
  • BACKGROUND: Insects are ectothermic organisms in terrestrial ecosystems and play various roles such as controlling plant biomass and maintaining species diversity. Because insects are ectothermic, their physiological responses are very sensitive to environmental temperature which determines survival and distribution of insect population and that affects climate change. This study aimed to identification of genes contributing to fitness under high temperature. METHODS AND RESULTS: To identify genes contributing to fitness under high temperature, the transcriptomes of fat body in Plutella xyostella larva have been analyzed via next generation sequencing. From the fat body transcriptomes, structure-related proteins, heat shock proteins, antioxidant enzymes and detoxification proteins were identified. Genes encoding proteins such as structural proteins (cuticular proteins, chitin synthase and actin), stress-related protein (cytochrome P450), heat shock protein and antioxidant enzyme (catalase) were up-regulated at high temperature. In contrast expression of glutathione S transferase was down-regulated. CONCLUSION: Identifications of temperature-specific up- or down-regulated genes can be useful for detecting temperature adaptation and understanding physiological responses in insect pests.

Zero-Length Crosslinking Study on Interactions of TBP, GAL4-AH, and TFIIB in the Preinitiation Complex (전사개시전 복합체에서 TBP, GAL4-AH, TFIIB의 상호작용에 대한 Zero-Length Crosslinking 실험)

  • 권혁만
    • The Korean Journal of Zoology
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    • v.39 no.4
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    • pp.393-399
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    • 1996
  • A zero-Iength croessinking procedure for studying protein-protein interactlons in preinitiation complex has heen developed. Preinltiadon complexes were assembled with immobilized DNA templates coupled to metal beads. Pudfied complexes were dIrectly crosslinked by 1-ethyl-3.(3-dimethylaminopropyl)carbodlimide (EDC). The reaction was stopped by addition of $\beta$-mercaptoethanol, and the complexes were isolated from EDC immedIately. An appllcatlion of this method with a preinltlation complex assembled with TBP, TFIIB, and GAL4-AH demonstrated that ThP dIrectly interacts with GAL4-AH and TFIIB in the prelnitlatlon complex. However, croeslinked produd between GAL4-AH and ThilB was not observed. These resutts lndlcate that GAL4-AH does not stably Interact with TFIIB In the GAL4-AH-TFIIB-TBP-DNA prelnitlatlon complex.

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