• The KIPS Transactions:PartB
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• v.18B no.2
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• pp.67-72
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• 2011

Single nucleotide polymorphisms (SNPs) are a very important tool for the study of human genome structure. Cluster analysis of the large amount of gene expression data is useful for identifying biologically relevant groups of genes and for generating networks of gene-gene interactions. In this paper we compared the clusters of SNPs within asthma group and normal control group obtained by using hierarchical cluster analysis method with entropy distance. It appears that the 5-cluster collections of the two groups are significantly different. We searched the best set of SNPs that are useful for diagnosing the two types of asthma using representative SNPs of the clusters of the asthma group. Here support vector machines are used to evaluate the prediction accuracy of the selected combinations. The best combination model turns out to be the five-locus SNPs including one on the gene ALOX12 and their accuracy in predicting aspirin tolerant asthma disease risk among asthmatic patients is 66.41%.

• Journal of Animal Science and Technology
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• v.47 no.4
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• pp.491-500
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• 2005

To test applicability to the Hanwoo traceability system, twenty microsatellite markers were selected and analyzed. MSA, CERVUS, FSTAT, GENEPOP, API_CALC and PHYLIP software was employed serially to estimate heterozygosity, polymorphic information content, F-statistics, identity probability, exclusion probability and genetic distance. Eleven microsatellite markers(TGLA53, TGLA227, ETH185, TGLA122, BM4305, INRA23, ILSTS013, BMS1747, BM2113, BL1009, and ETH3) were selected based on their high heterozygosity values. Identity probability using these markers is one hundred times higher than when using StockMakersTM of Applied Biosystems. This indicates the selected microsatellite markers are appropriate and effective for use in the Hanwoo traceability system. Additionally, estimates of DA genetic distance and pairwise-FST can be utilized to identify genetic relationships between adjacent farms.

• Journal of Life Science
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• v.16 no.5
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• pp.740-745
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• 2006

Inter simple sequence repeat (ISSR) markers were performed in order to analyse the phylogenetic relationships of four taxa of Castor-aralia (Kalopanax pictus): K. pictus, K. pictus var. magnificus, K. pictus var. maximowiczii, and thornless K. pictus. The 11 primers were produced 64 reproducible ISSR bands. Analysis of ISSR from individual plants of Korean K. pictus resulted in 41 polymorphic bands with 64.1%. When species were grouped by four taxa, within group diversity was 0.115 $(H_S)$, while among group diversity was 0.467 $(G_{ST})$ on a per locus basis. The estimated gene flow (Nm) for K. pictus var. maximowiczii and K. pictus var. magnificus were very higher than K. pictus. It is suggested that the isolation of geographical distance and reproductive isolation among K. pictus populations may have played roles in shaping the population structure of this species. In phenetic tree, ISSR markers are very effective in classifying natural populations as well as taxon levels of genus Kalopanax in Korea.

• Korean Journal of Plant Resources
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• v.27 no.1
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• pp.89-94
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• 2014

Varietal distances were measured by Mahalanobis's $D^2$ statistics in 190 possible comparisons among twenty varieties of Prunus mume with twelve characters such as seed weight, length, width, and diameter, fruit weight, and number of sepals, petals, pistils, and stigmas, and leaf length and width. A complete linkage cluster analysis based on the Mahalanobis's distance ($D^2$) was attempt. Twenty varieties of Prunus mume were largely classified into five subgroups. Group I, II, III, IV and V included two, four, five, five and four varieties, respectively. Most of the varietal groups were not associated with their geographical origins. Number of stigmas, and leaf length and width among the twelve characters were the largest contributors to the $D^2$ in both intra-and inter groups.

• Electrical & Electronic Materials
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• v.6 no.5
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• pp.461-469
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• 1993

본 논문에서는 대기상태에서 불평등 전계를 형성하는 봉대봉 전극사이에 절연판 장벽을 삽입하였을 때 절연특성이 개선되는 장벽효과를 실험적으로 연구하였다. 본 실험에서 전극사이에 각각 절연 장벽을 삽입하였을 때와 삽입하지 않았을 때의 섬락정압을 측정하고 또 여러 종류의 장벽 재료에 대해 장벽의 높이와 두께를 변화 시켰을 때의 섬락전압을 측정함으로써 장벽효과를 연구 검토하였다. 실험결과, 절연체 장벽을 각각 삽입하였을 때와 삽입하지 않았을 때의 섬락전압의 비는 1.3-2.0 정도임을 확인하였고 또한 장벽의 높이가 전극간 거리와 같아질 때까지는 섬락전압이 상승하였으나 그 이상일 때에는 변화하지 않음을 알 수 있었다. 또 장벽이 두꺼울수록, 장벽 재료의 유전율이 작아질수록 섬락정압이 상승하였다.

• Proceedings of the Korean Institute of Information and Commucation Sciences Conference
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• 2001.05a
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• pp.493-496
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• 2001

본 논문에서는 선박에서 사용하는 유수 경계면 및 온도 검출기 센싱 모듈을 설계하였다. 설계된 모듈들은 구체적으로 세부분으로 나눌 수 있다. 첫째는 유수 경계면 검출부분이고, 둘째는 온도 건출부분, 셋째는 전체를 제어하는 제어부분으로 나눌 수 있다. 처음으로 유수 경계면 검출부분은 각 물질의 고유한 유전율을 이용하여 설계하였다. 이것을 이용하여 추출된 경계면의 값은 제어부에서 스피커를 통해 사람이 들을 수 있는 신호음으로 나타난다. 두 번째는 온도 검출부분이다. 기름이나, 가스는 온도에 따라 부피가 변하게 된다. 이러한 온도를 측정함으로써 실제 부피를 정확하게 계산할 수 있다. 마지막으로 전체를 제어하는 제어부분이다. 위에서 언급한 것처럼 제어부는 PIC16F84를 사용하여 유수면 경계검출부분과 온도 검출부분을 통합적으로 제어한다. 설계된 모듈들의 결과를 보면 우선 유수 경계면 검출을 오차 $\pm$2mm 내에서 거리 측정이 이루어지며, 온도 검출은 0.2$^{\circ}C$의 정확도를 가지는 성능을 보였다.

• Proceedings of the Korean Vacuum Society Conference
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• 2011.02a
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• pp.226-226
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• 2011

소형 대기압 플라즈마 소스는 그 형태에 따라 DBD (Dielectric Barrier Discharge)나 Plasma Needle, 혹은 Plasma Jet 등으로 구별되며, 구동 파형의 특성에 따라 DC, RF (Radio Frequency), 혹은 Pulsed 방식 등으로 나뉜다. 또한 코로나 방전도 소형 대기압 플라즈마 장치에서 사용된다. DBD는 1857년 Siemens에 의해 최초로 보고 되었고 산업 분야에서 대규모로 사용되어 왔다. 본 연구에서는 대향 방전 DBD 대신 유전체 양쪽 면에 전극이 도포된 면방전 형태의 DBD 구조 내부로 He 가스가 흐를 때의 방전에 대한 광학적 진단을 수행하였다. 전극간의 거리와 가스 유속의 변화에 따라 방전 특성이 어떻게 달라지에 대해서 Optical Emission Spectroscopy (OES)를 통하여 생성되는 radical 종의 변화를 측정하고 ICCD (intensified charge coupled device) image를 통해 방전이 시간에 따라 어떻게 진행되는지를 진단하였다.

• Korean journal of applied entomology
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• v.61 no.4
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• pp.641-649
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• 2022

Leaf-rolling moths were collected from soybean fields and identified as Matsumuraeses falcana and Matsumuraeses phaseoli by comparison with laboratory-reared species based on the nucleotide sequence (658 bp) of the mitochondrial cytochrome c oxidase 1 subunit gene (COX1). Ten haplotypes with 0.15-0.46% genetic distance from each other in COX1 were found in 47 samples of M. falcana, in which haplotype A was dominant (approximately 70%). Only one type of COX1 was found in 30 samples of M. phaseoli, and its sequence showed 4.11-4.61% genetic distance from those of M. falcana. Amino acid sequences translated from COX1 were identical in all samples of both species, and they showed synonymous substitutions. Larvae of both species caused damage to soybean leaves and pods and co-occurred simultaneously in the field. The average density of M. falcana was 1.5 times higher than that of M. phaseoli. The results clearly indicate that soybean was the host plant for both species. In addition, Elodia flavipalpis (Diptera: Tachinidae) was found to be a larval parasitoid of Matsumuraeses sp. through identification of the COX1 gene.

• Journal of Plant Biotechnology
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• v.29 no.3
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• pp.151-159
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• 2002

Genetic map and molecular marker have a great importance in improving and facilitating crop breeding program as well as in genome analysis and map-based cloning of genes representing desirable characters. This study aimed at developing RAPD markers and constructing a genetic linkage map using 82 BC$_1$F$_1$individuals originated from the cross between '835' and B$_2$in radish (Raphanus sativus L.). One of the parents for genetic linkage map construction, '835'(P$_1$) of egg type is susceptible to Fusarium wilt and have medium resistance to virus infection and the other parent, B$_2$(P$_2$) of round type, is susceptible to Fusarium wilt and virus, Screening of 394 RAPD primers in BC$_1$F$_1$) population resulted in selecting 128 polymorphic markers which displayed 1:1 segregation pattern. Two markers failed to display 1:1 segregation and showed the segregation ratio skewed to maternal genotype. Selected markers were categorized into 14 linkage group based on LOD score represented by MAPMAKER/EXP program. Five groups composed of single marker among them were excluded from the linkage map, and consequently, the remaining groups are well matched with the number of radish chromosome (n＝9). The linkage map constructed with 128 markers covers 1,688.3 cM and the average distance between markers was 13.8 cM. For developing STS marker, we determined the partial nucleotide sequence of OPE10 marker at both ends and designed a oligonucleotide primer pair based on this sequence. STS PCR using the primer pair displayed a single, clear band of which segregation is perfectly matched with that of OPE10 marker. This implies that RAPD markers could readily convert into clear and reliable STS markers.

• Korean Journal of Ichthyology
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• v.21 no.2
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• pp.67-75
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• 2009

Morphological and genetic variation of Cottus populations in Korea were compared to each other in the watershed. Morphological variation was analyzed by meristic and morphometric characters, and by fertilized egg sizes. Genetic variation was assessed by amplified fragment length polymorphism (AFLP) fingerprinting. Cottus koreanus populations of rivers and streams running towards the eastern coasts of the Korean Peninsula were significantly different in morphometric characters from populations in rivers and streams running towards the western and southern coasts of the Korean Peninsula, but did not differ in meristric characters and fertilized egg sizes. Cottus populations in the upper streams-Yangyangnamadae Stream, Jusu Stream and Samcheogosip Stream-were the same in meristic and genetic characters. However, the Cottus sp. population from Baebong Stream is related to C. hangiongensis in meristic characteristics and to C. koreanus in the morphometric characteristics of length of the ventral fin ray and in the fertilized egg size. Pairwise genetic distances assessed by the AFLP method among C. koreanus populations were in the range of 0.110 to 0.221. Genetic distances between C. hangiongensis and C. koreanus populations varied from 0.542 to 0.621, and those between the Cottus sp. population of Baebong Stream and C. koreanus populations from 0.222 to 0.304. The result of the UPGMA dendrogram shows the Cottus sp. population of Baebong Stream was clearly separated of other C. koreanus populations.