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The Prediction of the Expected Current Selection Coefficient of Single Nucleotide Polymorphism Associated with Holstein Milk Yield, Fat and Protein Contents

  • Lee, Young-Sup;Shin, Donghyun;Lee, Wonseok;Taye, Mengistie;Cho, Kwanghyun;Park, Kyoung-Do;Kim, Heebal
    • Asian-Australasian Journal of Animal Sciences
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    • 제29권1호
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    • pp.36-42
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    • 2016
  • Milk-related traits (milk yield, fat and protein) have been crucial to selection of Holstein. It is essential to find the current selection trends of Holstein. Despite this, uncovering the current trends of selection have been ignored in previous studies. We suggest a new formula to detect the current selection trends based on single nucleotide polymorphisms (SNP). This suggestion is based on the best linear unbiased prediction (BLUP) and the Fisher's fundamental theorem of natural selection both of which are trait-dependent. Fisher's theorem links the additive genetic variance to the selection coefficient. For Holstein milk production traits, we estimated the additive genetic variance using SNP effect from BLUP and selection coefficients based on genetic variance to search highly selective SNPs. Through these processes, we identified significantly selective SNPs. The number of genes containing highly selective SNPs with p-value <0.01 (nearly top 1% SNPs) in all traits and p-value <0.001 (nearly top 0.1%) in any traits was 14. They are phosphodiesterase 4B (PDE4B), serine/threonine kinase 40 (STK40), collagen, type XI, alpha 1 (COL11A1), ephrin-A1 (EFNA1), netrin 4 (NTN4), neuron specific gene family member 1 (NSG1), estrogen receptor 1 (ESR1), neurexin 3 (NRXN3), spectrin, beta, non-erythrocytic 1 (SPTBN1), ADP-ribosylation factor interacting protein 1 (ARFIP1), mutL homolog 1 (MLH1), transmembrane channel-like 7 (TMC7), carboxypeptidase X, member 2 (CPXM2) and ADAM metallopeptidase domain 12 (ADAM12). These genes may be important for future artificial selection trends. Also, we found that the SNP effect predicted from BLUP was the key factor to determine the expected current selection coefficient of SNP. Under Hardy-Weinberg equilibrium of SNP markers in current generation, the selection coefficient is equivalent to $2^*SNP$ effect.

염증이 유발된 인간기관지상피세포에서 오미자가 Microarray를 이용한 유전자 발현 분석에 미치는 영향 (Microarray Analysis of Gene Expression Profile by Treatment of Schizandrae fructus Extract in Inflammation-induced Human Epithelial A549 Cells)

  • 정진용;정승기;정희재;이형구
    • 대한한방내과학회지
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    • 제29권3호
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    • pp.543-553
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    • 2008
  • Objective: The goal of this study was to determine the anti-asthma mechanism of SF on TNF-${\alpha}$ induced activation on A549 (human type II-like epithelial) cells. Using oligonucleotide microarray, we sought to establish the molecular mechanism of the protective effects of SF on A549 cells. Material & Methods : Cells were cultured in three different conditions: 1) negative control group was cultured in normal condition of DMEM, 2) positive control group was activated with TNF-${\alpha}$, IL-4. and IL-1${\beta}$, and 3) SF treated group was previously treated with 0.1${\mu}g/ml$ SF after TNF-${\alpha}$, IL-4. and IL-1 activation. Cells of positive control and SF treated groups were cultured for 30 min, 1hr, 3hr and 6hr. Results : The comparative analysis of the gene expression profile revealed that proinflammatory cytokines such as IL1F8, IL1F9, IL1R1. IL1RN, IL1RAPL1, IL8, TNFRSF4, TNFSF10c, TNFSF13, TRAF5, and TRAF7 and inflammation-related genes including MMP2, MMP11, MMP14, MMP15, MMP16, MMP19, MMP25, and MMP27 were down regulated with SF treatment. Cell adhesion molecule genes such as ITGB1, ITGBL1, selectin P ligand, selectin E, ICAM2, ICAM3, VCAM1, PECAM, FCER1G and MMP28 genes were also down-regulated in SF treated A549 cells. Conclusion : These results suggest that the anti-asthmatic effects of SF could be mediated by regulating specific genes related with cell adhesion, proinflammatory cytokine and inflammation-related genes in A549 cells.

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Ginsenoside Rg1 activates ligand-independent estrogenic effects via rapid estrogen receptor signaling pathway

  • Gao, Quan-Gui;Zhou, Li-Ping;Lee, Vien Hoi-Yi;Chan, Hoi-Yi;Man, Cornelia Wing-Yin;Wong, Man-Sau
    • Journal of Ginseng Research
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    • 제43권4호
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    • pp.527-538
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    • 2019
  • Background: Ginsenoside Rg1 was shown to exert ligand-independent activation of estrogen receptor (ER) via mitogen-activated protein kinase-mediated pathway. Our study aimed to delineate the mechanisms by which Rg1 activates the rapid ER signaling pathways. Methods: ER-positive human breast cancer MCF-7 cells and ER-negative human embryonic kidney HEK293 cells were treated with Rg1 ($10^{-12}M$, $10^{-8}M$), $17{\beta}$-estradiol ($10^{-8}M$), or vehicle. Immunoprecipitation was conducted to investigate the interactions between signaling protein and ER in MCF-7 cells. To determine the roles of these signaling proteins in the actions of Rg1, small interfering RNA or their inhibitors were applied. Results: Rg1 rapidly induced $ER{\alpha}$ translocation to plasma membrane via caveolin-1 and the formation of signaling complex involving linker protein (Shc), insulin-like growth factor-I receptor, modulator of nongenomic activity of ER (MNAR), $ER{\alpha}$, and cellular nonreceptor tyrosine kinase (c-Src) in MCF-7 cells. The induction of extracellular signal-regulated protein kinase and mitogen-activated protein kinase kinase (MEK) phosphorylation in MCF-7 cells by Rg1 was suppressed by cotreatment with small interfering RNA against these signaling proteins. The stimulatory effects of Rg1 on MEK phosphorylation in these cells were suppressed by both PP2 (Src kinase inhibitor) and AG1478 [epidermal growth factor receptor (EGFR) inhibitor]. In addition, Rg1-induced estrogenic activities, EGFR and MEK phosphorylation in MCF-7 cells were abolished by cotreatment with G15 (G protein-coupled estrogen receptor-1 antagonist). The increase in intracellular cyclic AMP accumulation, but not Ca mobilization, in MCF-7 cells by Rg1 could be abolished by G15. Conclusion: Ginsenoside Rg1 exerted estrogenic actions by rapidly inducing the formation of ER containing signalosome in MCF-7 cells. Additionally, Rg1 could activate EGFR and c-Src ER-independently and exert estrogenic effects via rapid activation of membrane-associated ER and G protein-coupled estrogen receptor.

Heme Oxygenase-1 Determines the Differential Response of Breast Cancer and Normal Cells to Piperlongumine

  • Lee, Ha-Na;Jin, Hyeon-Ok;Park, Jin-Ah;Kim, Jin-Hee;Kim, Ji-Young;Kim, BoRa;Kim, Wonki;Hong, Sung-Eun;Lee, Yun-Han;Chang, Yoon Hwan;Hong, Seok-Il;Hong, Young Jun;Park, In-Chul;Surh, Young-Joon;Lee, Jin Kyung
    • Molecules and Cells
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    • 제38권4호
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    • pp.327-335
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    • 2015
  • Piperlongumine, a natural alkaloid isolated from the long pepper, selectively increases reactive oxygen species production and apoptotic cell death in cancer cells but not in normal cells. However, the molecular mechanism underlying piperlongumine-induced selective killing of cancer cells remains unclear. In the present study, we observed that human breast cancer MCF-7 cells are sensitive to piperlongumine-induced apoptosis relative to human MCF-10A breast epithelial cells. Interestingly, this opposing effect of piperlongumine appears to be mediated by heme oxygenase-1 (HO-1). Piperlongumine upregulated HO-1 expression through the activation of nuclear factor-erythroid-2-related factor-2 (Nrf2) signaling in both MCF-7 and MCF-10A cells. However, knockdown of HO-1 expression and pharmacological inhibition of its activity abolished the ability of piperlongumine to induce apoptosis in MCF-7 cells, whereas those promoted apoptosis in MCF-10A cells, indicating that HO-1 has anti-tumor functions in cancer cells but cytoprotective functions in normal cells. Moreover, it was found that piperlongumine-induced Nrf2 activation, HO-1 expression and cancer cell apoptosis are not dependent on the generation of reactive oxygen species. Instead, piperlongumine, which bears electrophilic ${\alpha},{\beta}$-unsaturated carbonyl groups, appears to inactivate Kelch-like ECH-associated protein-1 (Keap1) through thiol modification, thereby activating the Nrf2/HO-1 pathway and subsequently upregulating HO-1 expression, which accounts for piperlongumine-induced apoptosis in cancer cells. Taken together, these findings suggest that direct interaction of piperlongumine with Keap1 leads to the upregulation of Nrf2-mediated HO-1 expression, and HO-1 determines the differential response of breast normal cells and cancer cells to piperlongumine.

산후우울증 환자에서 혈장 Cytokine의 농도변화에 대한 전향적 연구 (Plasma Levels of Cytokines in Patients with Postpartum Depression)

  • 이윤정;김용구;김계현;이분희
    • 정신신체의학
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    • 제28권2호
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    • pp.177-184
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    • 2020
  • 연구목적 산후우울증은 일반적으로 산모의 10~15%에서 발병하는 질환으로 그 원인으로는 정신사회적인 요인과 산과적인 요인이 모두 관계 있다고 알려져 있다. 감염, 손상, 악성종양, 자가면역질환, 스트레스에 의해 면역체계가 자극되면 proinflammatory cytokine과 anti-inflammatory cytokine이 생성되고 분비된다고 알려져 있다. 본 연구에서는 산후우울증이 있는 경우 산후우울증이 없는 군에 비해 혈중 Transforming growth factor-β1(TGF-β1), Insulin-like growth factor-1 (IGF-1), β-Nerve growth factor (β-NGF), Interleukin-2 (IL-2), IL-4, IL-6, Tumor necrosis factor-α (TNF-α), Interferon-γ (IFN-γ)의 농도가 상승되어 있을 것이라 가정하고, 임산부에서의 우울증의 경과에 따라 cytokine의 농도의 변화를 알아보고자 한다. 방 법 본 연구는 총 104 명의 임산부와 60명의 임신을 하지 않은 정상 대조군을 대상으로 하였다. 우울 증상은 임신 24주, 출산 1주, 출산 6주에 에딘버러 산후 우울 척도(EPDS)를 사용하여 평가하였다. EPDS의 총 점수가 10 이상인 경우, 우울증상이 있는 것으로 판단하였으며 EPDS 점수 변화에 따라 임산부 정상대조군, 출산 후 우울-회복군, 출산 후 우울군 세 그룹으로 나누었다. 결 과 임신군과 비임신 정상대조군을 비교하였을 때 TGF-β1, IGF-1의 혈장 농도는 임신군에서 비임신 정상대조군보다 더 높았다(TGF-β1 ; p<0.01, IGF-1 ; p=0.026). 그러나 β-NGF, IL-2, IL-4, IL-6, IFN-γ, TNF-α는 비임신 여성대조군에 비해 임산부 정상대조군에서 그 농도가 낮게 측정되었다(β-NGF ; p=0.001, IL-2 ; p<0.01, IL-4 ; p<0.01, IL-6 ; p<0.01, IFN-γ ; p<0.01, TNF-α ; p<0.01) 임신 24주에 TGF-β1, IGF-1, β-NGF, IL-2, IL-4, IL-6, IFN-γ, TNF-α의 농도를 살펴보면 임산부 정상대조군, 출산 후 우울-회복군, 출산 후 우울군 세 군간에 유의한 차이가 없었으며 출산 6주에도 역시 유의한 차이가 관찰되지 않았다. 또한 임신 24주, 출산 6주에 시간에 따른 농도 차이를 비교해 보았을 때 세 군에서 모두 그 통계적으로 유의한 차이는 없었다. 결 론 본 연구는 비임신 정상대조군과 임신군간의 혈장 cytokine 농도에서 유의한 차이를 발견했으나 산후우울증군과 정상 임신대조군간의 혈장 cytokine 농도는 유의한 차이를 밝혀내지는 못했다.

New Boron Compound, Silicon Boride Ceramics for Capturing Thermal Neutrons (Possibility of the material application for nuclear power generation)

  • Matsushita, Jun-ichi
    • 한국재료학회:학술대회논문집
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    • 한국재료학회 2011년도 춘계학술발표대회
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    • pp.15-15
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    • 2011
  • As you know, boron compounds, borax ($Na_2B_4O_5(OH)_4{\cdot}8H_2O$) etc. were known thousands of years ago. As for natural boron, it has two naturally occurring and stable isotopes, boron 11 ($^{11}B$) and boron 10 ($^{10}B$). The neutron absorption $^{10}B$ is included about 19~20% with 80~81% $^{11}B$. Boron is similar to carbon in its capability to form stable covalently bonded molecular networks. The mass difference results in a wide range of ${\beta}$ values between the $^{11}B$ and $^{10}B$. The $^{10}B$ isotope, stable with 5 neutrons is excellent at capturing thermal neutrons. For example, it is possible to decrease a thermal neutron required for the nuclear reaction of uranium 235 ($^{235}U$). If $^{10}B$ absorbs a neutron ($^1n$), it will change to $^7Li+^1{\alpha}$ (${\alpha}$ ray, like $^4He$) with prompt ${\gamma}$ ray from $^{11}B$ $^{11}B$ (equation 1). $$^{10}B+^1n\;{\rightarrow}\;^{11}B\;{\rightarrow}\; prompt \;{\gamma}\;ray (478 keV), \;^7Li+4{\alpha}\;(4He)\;\;\;\;{\cdots}\; (1)$$ If about 1% boron is added to stainless steel, it is known that a neutron shielding effect will be 3 times the boron free steel. Enriched boron or $^{10}B$ is used in both radiation shielding and in boron neutron capture therapy. Then, $^{10}B$ is used for reactivity control and in emergency shutdown systems in nuclear reactors. Furthermore, boron carbide, $B_4C$, is used as the charge of a nuclear fission reaction control rod material and neutron cover material for nuclear reactors. The $B_4C$ powder of natural B composition is used as a charge of a control material of a boiling water reactor (BWR) which occupies commercial power reactors in nuclear power generation. The $B_4C$ sintered body which adjusted $^{10}B$ concentration is used as a charge of a control material of the fast breeder reactor (FBR) currently developed aiming at establishment of a nuclear fuel cycle. In this study for new boron compound, silicon boride ceramics for capturing thermal neutrons, preparation and characterization of both silicon tetraboride ($SiB_4$) and silicon hexaboride ($SiB_6$) and ceramics produced by sintering were investigated in order to determine the suitability of this material for nuclear power generation. The relative density increased with increasing sintering temperature. With a sintering temperature of 1,923 K, a sintered body having a relative density of more than 99% was obtained. The Vickers hardness increased with increasing sintering temperature. The best result was a Vickers hardness of 28 GPa for the $SiB_6$ sintered at 1,923K for 1 h. The high temperature Vickers hardness of the $SiB_6$ sintered body changed from 28 to 12 GPa in the temperature range of room temperature to 1,273 K. The thermal conductivity of the SiB6 sintered body changed from 9.1 to 2.4 W/mK in the range of room temperature to 1,273 K.

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Comparative secretome analysis of human follicular dermal papilla cells and fibroblasts using shotgun proteomics

  • Won, Chong-Hyun;Kwon, Oh-Sang;Kang, Yong-Jung;Yoo, Hyeon-Gyeong;Lee, Dong-Hun;Chung, Jin-Ho;Kim, Kyu-Han;Park, Won-Seok;Park, Nok-Hyun;Cho, Kun;Kwon, Sang-Oh;Choi, Jong-Soon;Eun, Hee-Chul
    • BMB Reports
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    • 제45권4호
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    • pp.253-258
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    • 2012
  • The dermal papilla cells (DPCs) of hair follicles are known to secrete paracrine factors for follicular cells. Shotgun proteomic analysis was performed to compare the expression profiles of the secretomes of human DPCs and dermal fibroblasts (DFs). In this study, the proteins secreted by DPCs and matched DFs were analyzed by 1DE/LTQ FTICR MS/MS, semi-quantitatively determined using emPAI mole percent values and then characterized using protein interaction network analysis. Among the 1,271 and 1,188 proteins identified in DFs and DPCs, respectively, 1,529 were further analyzed using the Ingenuity Pathway Analysis tool. We identified 28 DPC-specific extracellular matrix proteins including transporters (ECM1, A2M), enzymes (LOX, PON2), and peptidases (C3, C1R). The biochemically-validated DPC-specific proteins included thrombospondin 1 (THBS1), an insulin-like growth factor binding protein3 (IGFBP3), and, of particular interest, an integrin beta1 subunit (ITGB1) as a key network core protein. Using the shotgun proteomic technique and network analysis, we selected ITGB1, IGFBP3, and THBS1 as being possible hair-growth modulating protein biomarkers.

Effect of all-trans retinoic acid on casein and fatty acid synthesis in MAC-T cells

  • Liao, Xian-Dong;Zhou, Chang-Hai;Zhang, Jing;Shen, Jing-Lin;Wang, Ya-Jing;Jin, Yong-Cheng;Li, Sheng-Li
    • Asian-Australasian Journal of Animal Sciences
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    • 제33권6호
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    • pp.1012-1022
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    • 2020
  • Objective: Caseins and fatty acids of milk are synthesized and secreted by the epithelial cells of the mammary gland. All-trans retinoic acid (ATRA), an active metabolite of vitamin A, has been shown to promote mammary development. This study was conducted to determine the effect of ATRA on casein synthesis and fatty acid composition in MAC-T cells. Methods: MAC-T cells were allowed to differentiate for 4 d, treated with ATRA (0, 1.0, 1.5, and 2.0 μM), and incubated for 3 d. We analyzed the fatty acid composition, the mRNA expression of casein and fatty acid synthesis-related genes, and the phosphorylation of casein synthesis-related proteins of MAC-T cells by gas chromatography, quantitative polymerase chain reaction, and western blotting, respectively. Results: In MAC-T cells, ATRA increased the mRNA levels of αS1-casein and β-casein, janus kinase 2 (JAK2) and E74-like factor 5 of the signal transducer and activator of transcription 5 β (STAT5-β) pathway, ribosomal protein S6 kinase beta-1 (S6K1) and eukaryotic translation initiation factor 4E binding protein 1 of the mammalian target of rapamycin (mTOR) pathway, inhibited the mRNA expression of phosphoinositide 3-kinase and eukaryotic initiation factor 4E of the mTOR pathway, and promoted the phosphorylation of STAT5-β and S6K1 proteins. Additionally, ATRA increased the de novo synthesis of fatty acids, reduced the content of long-chain fatty acids, the ratio of monounsaturated fatty acids to saturated fatty acids (SFA), the ratio of polyunsaturated fatty acids (PUFA) to SFA, and the ratio of ω-6 to ω-3 PUFA. The mRNA levels of acetyl-CoA carboxylase 1, fatty acid synthase, lipoprotein lipase, stearoyl-CoA desaturase, peroxisome proliferator-activated receptor gamma, and sterol regulatory element-binding protein 1 (SREBP1) were enhanced by ATRA. Conclusion: ATRA promotes the synthesis of casein by regulating JAK2/STAT5 pathway and downstream mTOR signaling pathway, and it improves the fatty acid composition of MAC-T cells by regulating SREBP1-related genes.

자구자(Hovenia dulcis Thunb) 추출물이 Streptozotocin으로 유발된 고혈당 생쥐에 미치는 영향 (Effect of Hovenia dulcis Thunb Extract on the Hyperglycemic Mice Induced with Streptozotocin)

  • 김정상;나창수;은종방
    • 한국식품영양과학회지
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    • 제34권5호
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    • pp.632-637
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    • 2005
  • 본 연구는 streptozotocin(STZ)을 투여하여 고혈당이 유발된 생쥐에 지구자(Hovenia dulcis) 추출물의 투여가 미치는 영향을 구명하기 위하여 수행하였다. 대조군(Con군)은 STZ로 고혈당을 유발한 후 생리식염수 2 mL/kg를 투여하였으며, 실험군은 고혈당이 유발된 생쥐에 지구자 추출물 0.01 g/kg(H1군)과 0.049/kg(H2군)를 매일 5주간 구강 투여하였다. 체중은 CG군이나 H1군에 비하여 H2군에서 가장 높았다. 혈당량은 대조군에 비하여 H1군과 H2군 모두에서 전반적으로 유의성있게 감소하였다. 당내성 검사 결과 대조군에 비하여 H1군과 H2군 모두에서 우수한 소견을 보여주었다. 인슐린 면역조직화학 결과 대조군 췌장의 췌장섬은 파괴되어 있었으나, H1군과 H2군에서는 인슐린-양성 세포들이 다수 관찰되었다. IGF-I과 II의 면역조직화학 결과 대조군에서는 소수의 샘포세포에서 양성반응을 보였으나, H2군에서는 다수의 샘포세포에서 아주 높은 면역반응성을 보여 주었다. 이상의 결과로 보아 지구자 추출물은 STZ로 유발된 손상으로부터 $\beta$-세포의 회복 또는 재생과 췌장 샘포세포의 IGF발현에 관여하는 것으로 사료되었다.

감잎차와 녹차의 항산화 및 항균 활성 비교 (Antioxidative and Antimicrobial Activities of Persimmon Leaf Tea and Green Tea)

  • 임정호;김범근;박찬은;박기재;김종찬;정진웅;정승원
    • 동아시아식생활학회지
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    • 제18권5호
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    • pp.797-804
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    • 2008
  • 시중에서 쉽게 구할 수 있고 즐겨 마시는 차로 이용되고 있는 감잎을 시료로 택하여 실제 음용 조건으로 추출하여 일반 성분, 클로로필 및 총 페놀 함량을 분석하였고, 전자공여능에 의한 항산화 활성, ACE 저해도, SOD 유사 활성, 아질산염 소거능 및 항균 활성을 조사하였다. 그 결과 녹차와 비교하였을 때 비슷한 수준의 높은 항산화 활성을 나타내었으며, ACE 저해도 역시 50% 이상의 높은 값을 나타내었다. SOD유사 활성 및 아질산염 소거능의 경우 오히려 녹차보다 더 우수한 것을 확인하였다. 항균 활성의 경우 4가지 균주 모두에 대하여 항균 활성이 있는 것을 확인하였으며, 특히 Staphylococcus aureus를 제외한 3가지 균주(Listeria monocytogenes, Escherichia coil, Salmonella typhimudum)에 대해서는 녹차 보다 우수한 활성을 나타내었다.

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