• Title/Summary/Keyword: $3_{10}$-helix

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Binding Specificity of Philyra pisum Lectin to Pathogen-Associated Molecular Patterns, and Its Secondary Structure

  • Park, Byung Tae;Kim, Byung Sun;Park, Heajin;Jeong, Jaehoon;Hyun, Hanbit;Hwang, Hye Seong;Kim, Ha Hyung
    • The Korean Journal of Physiology and Pharmacology
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    • v.17 no.6
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    • pp.547-551
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    • 2013
  • We recently reported a Philyra pisum lectin (PPL) that exerts mitogenic effects on human lymphocytes, and its molecular characterization. The present study provides a more detailed characterization of PPL based on the results from a monosaccharide analysis indicating that PPL is a glycoprotein, and circular dichroism spectra revealing its estimated ${\alpha}$-helix, ${\beta}$-sheet, ${\beta}$-turn, and random coil contents to be 14.0%, 39.6%, 15.8%, and 30.6%, respectively. These contents are quite similar to those of deglycosylated PPL, indicating that glycans do not affect its intact structure. The binding properties to different pathogen-associated molecular patterns were investigated with hemagglutination inhibition assays using lipoteichoic acid from Gram-positive bacteria, lipopolysaccharide from Gram-negative bacteria, and both mannan and ${\beta}$-1,3-glucan from fungi. PPL binds to lipoteichoic acids and mannan, but not to lipopolysaccharides or ${\beta}$-1,3-glucan. PPL exerted no significant antiproliferative effects against human breast or bladder cancer cells. These results indicate that PPL is a glycoprotein with a lipoteichoic acid or mannan-binding specificity and which contains low and high proportions of ${\alpha}$-helix and ${\beta}$-structures, respectively. These properties are inherent to the innate immune system of P. pisum and indicate that PPL could be involved in signal transmission into Gram-positive bacteria or fungi.

cDNA Cloning, Sequence Analysis and Molecular Modeling of a New Peptide from the Scorpion Buthotus saulcyi Venom

  • Nikkhah, Maryam;Naderi-Manesh, Hossein;Taghdir, Majid;Talebzadeh, Mehdi;Sadeghi-Zadeh, Majid;Schaller, Janatan;Sarbolouki, Mohamad N.
    • BMB Reports
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    • v.39 no.3
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    • pp.284-291
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    • 2006
  • In this study, the cDNA of a new peptide from the venom of the scorpion, Buthotus saulcyi, was cloned and sequenced. It codes for a 64 residues peptide (Bsaul1) which shares high sequence similarity with depressant insect toxins of scorpions. The differences between them mainly appear in the loop1 which connects the $\beta$-strand1 to the $\alpha$-helix and seems to be functionally important in long chain scorpion neurotoxins. This loop is three amino acids longer in Bsaul1 compared to other depressant toxins. A comparative amino acid sequence analysis done on Bsaul1 and some of $\alpha$-, $\beta$-, excitatory and depressant toxins of scorpions showed that Bsaul1 contains all the residues which are highly conserved among long chain scorpion neurotoxins. Structural model of Bsaul1 was generated using Ts1 (a $\beta$-toxin that competes with the depressant insect toxins for binding to $Na^+$ channels) as template. According to the molecular model of Bsaul1, the folding of the polypeptide chain is being composed of an anti-parallel three-stranded $\beta$-sheet and a stretch of $\alpha$-helix, tightly bound by a set of four disulfide bridges. A striking similarity in the spatial arrangement of some critical residues was shown by superposition of the backbone conformation of Bsaul1 and Ts1.

Stem Rot of English Ivy Caused by Phytophthora cinnamomi (Phytophthora cinnamomi에 의한 아이비줄기썩음병)

  • Kim, Hyung-Moo;Jin, Kyo-Hoon;Ko, Jung-Ae
    • Research in Plant Disease
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    • v.13 no.3
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    • pp.207-210
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    • 2007
  • A stem and root rot disease of English ivy (Hedera helix) was found in the flower market, Jeonju, Chonbuk province, Korea in May 2007. A Phytophthora species was isolated from the diseased part of the plant. Based on the mycological properties and pathogenesis the isolate was identified as Phytophthora cinnamomi. The fungus produce ovoid sporangium which was ovoid to spherical and obpyriform which is noncaducous, non-papillate and averaged $33.8{\times}16{\mu}m$ in dimension. Chlamydospores were abundantly produced on agar media and sized about $19.7{\mu}m$ in diameter. The fungus was heterothallic and A1 mating type. Oospores were measured $26.2{\mu}m$ in size. Optimum temperature for growth of the fungus was 25 to $30^{\circ}C$. Up to our knowledge, this is the first report demonstrating the stem rot on English ivy caused by P. cinnamomi in Korea.

Stem Rot of English Ivy Caused by Phytophthora nicotianae (Phytophthora nicotianae에 의한 아이비줄기썩음병)

  • Kim, Hyung-Moo;Jin, Kyo-Hoon;Ko, Jung-Ae
    • Research in Plant Disease
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    • v.14 no.2
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    • pp.122-126
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    • 2008
  • A stem and leaf rot disease of English ivy(Hedera helix) was found in the flower market, Jeonju, Chonbuk province, Korea in July 2007. A Phytophthora species was isolated from the diseased part of the plant. Based on the mycological properties and pathogenesis the isolate was identified as Phytophthora nicotianae. The fungus produce ovoid sporangium which was ovoid to spherical which is noncaducous, papillate and averaged $35.4{\times}25.2{\mu}m$ in dimension. Chlamydospores were abundantly produced on agar media and sized about 28.5 ${\mu}m$ in diameter. The fungus was heterothallic and A1 mating type. Oospores were measured 23.3 ${\mu}m$ in size. Optimum temperature for growth of the fungus was 25 to $30^{\circ}C$. Up to our knowledge, this is the first report demonstrating the stem rot on English ivy caused by P. nicotianae in Korea.

Characterization of the rcsA Gene from Pantoea sp. Strain PPE7 and Its Influence on Extracellular Polysaccharide Production and Virulence on Pleurotus eryngii

  • Kim, Min Keun;Lee, Sun Mi;Seuk, Su Won;Ryu, Jae San;Kim, Hee Dae;Kwon, Jin Hyeuk;Choi, Yong Jo;Yun, Han Dae
    • The Plant Pathology Journal
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    • v.33 no.3
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    • pp.276-287
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    • 2017
  • RcsA is a positive activator of extracellular polysaccharide (EPS) synthesis in the Enterobacteriaceae. The rcsA gene of the soft rot pathogen Pantoea sp. strain PPE7 in Pleurotus eryngii was cloned by PCR amplification, and its role in EPS synthesis and virulence was investigated. The RcsA protein contains 3 highly conserved domains, and the C-terminal end of the open reading frame shared significant amino acid homology to the helix-turn-helix DNA binding motif of bacterial activator proteins. The inactivation of rcsA by insertional mutagenesis created mutants that had decreased production of EPS compared to the wild-type strain and abolished the virulence of Pantoea sp. strain PPE7 in P. eryngii. The Pantoea sp. strain PPE7 rcsA gene was shown to strongly affect the formation of the disease symptoms of a mushroom pathogen and to act as the virulence factor to cause soft rot disease in P. eryngii.

POSITION VECTORS OF A SPACELIKE W-CURVE IN MINKOWSKI SPACE 𝔼13

  • Ilarslan, Kazim;Boyacioglu, Ozgur
    • Bulletin of the Korean Mathematical Society
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    • v.44 no.3
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    • pp.429-438
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    • 2007
  • In this paper, we study the position vectors of a spacelike W-curve (or a helix), i.e., curve with constant curvatures, with spacelike, timelike and null principal normal in the Minkowski 3-space $\mathbb{E}_1^3$. We give some characterizations for spacelike W - curves whose image lies on the pseudohyperbolical space $\mathbb{H}_0^2$ and Lorentzian sphere $\mathbb{S}_1^2$ by using the positions vectors of the curve.

ASCL2 Gene Expression Analysis and Its Association with Carcass Traits in Pigs

  • Cheng, H.C.;Zhang, F.W.;Deng, C.Y.;Jiang, C.D.;Xiong, Y.Z.;Li, F.E.;Lei, M.G.
    • Asian-Australasian Journal of Animal Sciences
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    • v.20 no.10
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    • pp.1485-1489
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    • 2007
  • Achaete-scute like 2 (ASCL2) gene encodes a member of the basic helix-loop-helix transcription factor which is essential for the maintenance of proliferating trophoblasts during placental development. ASCL2 gene preferentially expresses the maternal allele in the mouse. However, it escapes genomic imprinting in the human. In this study, the complete open reading frame consisting of 193 amino acids of ASCL2 gene was obtained. Sequence analysis indicated that a C-G mutation existed in the 3' region between Meishan and Large White pigs. The polymorphism was used to determine the monoallelic or biallelic expression with RT-PCR-RFLP in pigs of Large $White{\times}Meishan$ $F_1$ hybrids. Imprinting analysis indicated that the ASCL2 gene expression was biallelic in all the tested tissues (heart, liver, spleen, lung, kidney, stomach, small intestine, skeletal muscle, fat, uterus, ovary and pituitary). PCR-RFLP was used to detect the polymorphism in 270 pigs of the "$Large\;White{\times}Meishan$" $F_2$ resource population. The statistical results showed highly significant associations of the genotypes and fat meat percentage (FMP), lean meat percentage (LMP) and ratio of lean to fat (RLF) (p<0.01), and significant associations of the genotypes and loin eye area (LEA) and internal fat rate (IFR) (p<0.05).

SOME INTEGRAL CURVES ASSOCIATED WITH A TIMELIKE FRENET CURVE IN MINKOWSKI 3-SPACE

  • Duldul, Bahar Uyar
    • Honam Mathematical Journal
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    • v.39 no.4
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    • pp.603-616
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    • 2017
  • In this paper, we give some relations related with a spacelike principal-direction curve and a spacelike binormal-direction curve of a timelike Frenet curve. The Darboux-direction curve and the Darboux-rectifying curve of a timelike Frenet curve in Minkowski 3-space $E^3_1$ are introduced and some characterizations related with these associated curves are given. Later we define the spacelike V-direction curve which is associated with a timelike curve lying on a timelike oriented surface in $E^3_1$ and present some results together with the relationships between the curvatures of this associated curve.

LOXODROMES AND TRANSFORMATIONS IN PSEUDO-HERMITIAN GEOMETRY

  • Lee, Ji-Eun
    • Communications of the Korean Mathematical Society
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    • v.36 no.4
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    • pp.817-827
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    • 2021
  • In this paper, we prove that a diffeomorphism f on a normal almost contact 3-manifold M is a CRL-transformation if and only if M is an α-Sasakian manifold. Moreover, we show that a CR-loxodrome in an α-Sasakian 3-manifold is a pseudo-Hermitian magnetic curve with a strength $q={\tilde{r}}{\eta}({\gamma}^{\prime})=(r+{\alpha}-t){\eta}({\gamma}^{\prime})$ for constant 𝜂(𝛄'). A non-geodesic CR-loxodrome is a non-Legendre slant helix. Next, we prove that let M be an α-Sasakian 3-manifold such that (∇YS)X = 0 for vector fields Y to be orthogonal to ξ, then the Ricci tensor 𝜌 satisfies 𝜌 = 2α2g. Moreover, using the CRL-transformation $\tilde{\nabla}^t$ we fine the pseudo-Hermitian curvature $\tilde{R}$, the pseudo-Ricci tensor $\tilde{\rho}$ and the torsion tensor field $\tilde{T}^t(\tilde{S}X,Y)$.

Effect of Applied Substrates on Foliage Growth in Hydro-Culture (수경재배 시 첨가매질이 관엽식물의 생장에 미치는 영향)

  • Jang, Hye-Sook;Lee, Sang-Gyu;Moon, Ji-Hye;Pak, Chun-Ho
    • Journal of Bio-Environment Control
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    • v.18 no.4
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    • pp.460-467
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    • 2009
  • This research was conducted for the purpose of investigating the influence substrates addition such as germanium or Granite porphyry gravel have on the growth of foliage, on the inorganic compositions of leaves as well as on root activity, in order to discover effective means of introducing plants to the indoors. Syngonium podophyllum, Dracaena sanderiana, Epipremnum aureum and Hedera helix were used as study subjects to which soil (mixed top-soil: Sunshine Mix No. 2, USA), tap water, tap water with germanium (300g), tap water with Granite porphyry gravel (300g) were added respectively and formulated. Studies on growth variations according to substrates addition indicate that growth of Syngonium podophyllum was most sluggish under tap water only treatment. Plant growth was most active under geranium-gravel treatment. In the case of Dracaena sanderiana, treatment of substrates addition had no meaningful influence on plant growth. However, the growth of Epipremnum aureum and Hedera helix was also shown to be most active under geranium-gravel treatment. Geranium-gravel treatment was shown to be particularly beneficial for root length, number of roots and dry weight. Root activity was analyzed on ten day intervals and there was discernable difference in the root activity of all the plants according to the varying treatments. In the case of the Syngonium podophyllum, the root activity was sluggish in all three types of treatment on the 10th day but improved gradually. On the 30th to the 50th day of the experiment, the root activity was found to be best under the Granite porphyry gravel treatment. In the case of the Dracaena sanderiana, the root activity was most active under the geranium-gravel treatment from the 10th to the 40th day but deteriorated from the 50th day. However, there was no significant different in all three treatments from the 60th day onwards. Analysis of the inorganic components of the leaves indicates that, while Ca and Mg were higher in the geranium than in the Granite porphyry gravel, they do not directly influence the content of inorganic components in the leaves. The results indicate that Epipremnum aureum and Hedera helix grow better under hydro-culture than when grown in soil and growth under hydro-culture is shown to increase when germanium is added to tap water.