• Title/Summary/Keyword: $3_{10}$-helix

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Ginsenosides Rb1 and Rg1 Decrease Proliferation but Increase Neuronal Differentiation of Hippocampal Neural Progenitor Cells (진세노사이드 Rb1과 Rg1에 의한 해마 신경전구세포의 분화 증가)

  • Yoon, Young-Ju;Lee, Jun-Seok;Kim, Young-Sook;Yang, Byung-Hwan;Son, Hyeon
    • Development and Reproduction
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    • v.10 no.3
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    • pp.169-175
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    • 2006
  • Ginseng is the best known and most popular herbal medicine used worldwide. In spite of reported beneficial effects of ginseng on the CNS, there is few scientific evidences established at the cellular level. Among more than 30 ginsenosides, Rb1 and Rg1, the active ingredients of ginseng, are regarded as the main compounds responsible for many pharmaceutical actions of ginseng. Daily treatment with Rb1 or Rg1 for 3 d significantly decreased the number of bromodeoxyuridine(BrdU)(+) cells in primary neural progenitor cells(NPCs) isolated from hippocampi at embryonic day 16.5(E16.5). In contrast, treatment with Rb1 or Rg1 greatly increased the number of microtubule associated protein(MAP2) (+) cells. In addition, the transcription factors, Ngn1 and Hes1, proneural members of the basic helix-loop-helix(bHLH) family, significantly increased in Rb1 or Rg1 treated-NPCs. Based on these results, we suggest for the first time that ginsenosides Rb1 and Rg1 decrease proliferation but promote neuronal differentiation of hippocampal NPCs.

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Rescuing p53 from mdm2 by a pre-structured motif in intrinsically unfolded SUMO specific protease 4

  • Kim, Do-Hyoung;Lee, Chewook;Kim, Bom;Lee, Si-Hyung;Han, Kyou-Hoon
    • BMB Reports
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    • v.50 no.10
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    • pp.485-486
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    • 2017
  • Many intrinsically unstructured/unfolded proteins (IUPs) contain transient local secondary structures even though they are "unstructured" in a tertiary sense. These local secondary structures are named "pre-structured motifs (PreSMos)" and in fact are the specificity determinants for IUP-target binding, i.e., the active sites in IUPs. Using high-resolution NMR we have delineated a PreSMo active site in the intrinsically unfolded mid-domain (residues 201-300) of SUMO-specific protease 4 (SUSP4). This 29-residue motif which we termed a p53 rescue motif can protect p53 from mdm2 quenching by binding to the p53-helix binding pocket in mdm2(3-109). Our work demonstrates that the PreSMo approach is quite effective in providing a structural rationale for interactions of p53-mdm2-SUSP4 and opens a novel avenue for designing mdm2-inhibiting anticancer compounds.

Backbone NMR Assignments and Secondary Structure Determination of a Cupin-family Protein YaiE from Escherichia coli

  • Lee, Sung-Hee;Sim, Dae-Won;Kim, Eun-Hee;Kim, Ji-Hun;Won, Hyung-Sik
    • Journal of the Korean Magnetic Resonance Society
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    • v.21 no.2
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    • pp.50-54
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    • 2017
  • Cupin-superfamily proteins represent the most functionally diverse groups of proteins and include a huge number of functionally uncharacterized proteins. Recently, YaiE, a cupin protein from Escherichia coli has been suggested to be involved in a novel activity of pyrimidine/purine nucleoside phosphorylase (PPNP). In the present study, we achieved a complete backbone NMR assignments of YaiE, by a series of heteronuclear multidimensional NMR experiments on its [$^{13}C/^{15}N$]-enriched sample. Subsequently, secondary structure analysis using the assigned chemical shift values identified 10 obvious ${\beta}-strands$ and a tentative $3_{10}-helix$. Taken all together, the results constitute the first structural characterization of a putative PPNP cupin protein.

Development of Marine Turning Gear Based on Helical Planetary Reducer (헬리컬 유성감속기 기반 선박용 터닝기어 개발)

  • Kim, Kun-Woo;Lee, Jae-Wook;Jang, Jin-Seok;Choi, Chang-Young;Hong, Jong-Hae;Lee, Kang-Jae
    • Journal of the Korean Society of Manufacturing Process Engineers
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    • v.19 no.10
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    • pp.36-43
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    • 2020
  • A marine turning gear is the main auxiliary machine that enables the disassembly of and maintenance on the main engines. In this study, a marine turning gear based on a helical planetary reducer was developed through analysis of a marine turning gear based on a spur planetary reducer. Nonlinear numerical analysis was performed to determine the ideal contact ratio between the sun gear and the idle gear. Based on this, the surface durability, tooth bending strength, and contact ratio were calculated. In addition, the helix direction was selected to utilize the existing bearings. Gears were manufactured based on the helical gear design values, and the turning gear was evaluated using the FTA standards of MAN Co. Ltd. As a result, a lifetime of 3,000 to 5,000 hours was verified, the maximum torque measured was 105kNm, and the efficiency was measured to be 87.4%.

Newborn English Bulldogs with Multiple Malformation Syndrome and Lethal Characters

  • Jang, Si-Jung;Kim, Minkyung;Lee, Hyeon-Jeong;You, Young-Sung;Lee, Jaehoon;Lee, Sung-Lim
    • Journal of Animal Reproduction and Biotechnology
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    • v.34 no.3
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    • pp.253-258
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    • 2019
  • A female English bulldog was gave birth two neonates by cesarean section on the sixty one days after mating, but both neonates were died soon after birth. The bodies of neonates were diagnosed using radiography, ultrasonography, computed tomography and necropsy immediately after death. Both neonates had caudal regression syndrome, butterfly vertebra, hydrocephalus, umbilical hernia, cleft palate and bow-legged hind-limb. At necropsy, neonates had mild fetal anasarca, cleft lip and the skull was remained non-union. At thoracic cavity, only three ribs and thoracic spines were existed and patent ductus arteriosus was found. At abnormal cavity, the renal ectopia was found with abnormal morphology. In the present case, those English bulldog neonates with multiple congenital malformation syndromes seriously suffered vertebral column anomalies and that may induced by neural tube defects in during embryonic period. To prevent congenital malformation occurring in English bulldog, further in depth studies are needed for the breed specific genetic diversity and for the reason of behind genetic abnormality in these breed.

Backbone NMR Assignments of a Putative p53-binding Domain of the Mitochondrial Hsp40, Tid1

  • Jo, Ku-Sung;Sim, Dae-Won;Kim, Eun-Hee;Kang, Dong-Hoon;Ma, Yu-Bin;Kim, Ji-Hun;Won, Hyung-Sik
    • Journal of the Korean Magnetic Resonance Society
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    • v.22 no.3
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    • pp.64-70
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    • 2018
  • Human Tid1, belonging to the family of the Hsp40/DnaJ, functions as a co-chaperone of cytosolic and mitochondrial Hsp70 proteins. In addition, the conserved J-domain and G/F-rich region of Tid1 has been suggested to interact with the p53 tumor suppressor protein, to translocate it to the mitochondria. Here, backbone NMR assignments were achieved for the putative p53-binding domain of Tid1. The obtained chemical shift information identified five ${\alpha}$-helices including four helices characteristic of J-domain, which are connected to a short ${\alpha}$-helix in the G/F-rich region via a flexible loop region. We expect that this structural information would contribute to our progressing studies to elucidate atomic structure and molecular interaction of the domain with p53.

Putative Histone H2A Genes from a Red Alga, Griffithsia japonica

  • Lee, Yoo-Kyung;Lee, Hong-Kum
    • ALGAE
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    • v.18 no.3
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    • pp.191-197
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    • 2003
  • Histones are important proteins that interact with the DNA double helix to form nucleosome. Two putative histone genes, GjH2A-1 and GjH2A-2 were isolated from a red alga Griffithsia japonica. The putative open reading frame of GjH2A-1 and GjH2A-2 shared high similarity with the previously reported amino acid sequences of histone H2As. They have a motif consisting of seven amino acids A-G-L-Q-F-P-V, which matches the histone H2A motif [AC]-G-L-x-F-P-V. Phylogenetic trees were constructed from amino acid sequences of 38 histone H2As. The histone H2As were divided into two groups: major H2As and H2A.F/Z variants. The major histone H2A group consisted of animals, fungi, plants + green algae, and red algae H2A subgroups. The animal histone H2A subgroup was divided into vertebrates, echinoderms, nematodes, insects, and segmented worms H2As. The putative red algal histone genes, GjH2A-1 and GjH2A-2, constituted an independent lineage. This is the first report on red algal histone genes.

Performance of Evaporation Heat Transfer Enhancement and Pressure Drop for Liquid Nitrogen (액체질소에 대한 증발 열전달 촉진 및 압력강하 성능)

  • Nam, Sang-Chul;Lee, Sang-Chun;Park, Byung-Duck
    • Transactions of the Korean Society of Mechanical Engineers B
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    • v.24 no.3
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    • pp.363-372
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    • 2000
  • An experiment was carried out to evaluate the heat transfer enhancement and the pressure drop characteristics for liquid nitrogen using wire-coil-insert technique under horizontal two-phase conditions. The tube inner diameters were 8 mm and 15 mm, respectively and the tube length was 4.7 m. The helix angle of the wire coil insert was $50^{\circ}$ and its length was 4.7 m. Heat transfer coefficients for both the plain and the enhanced test tubes were calculated from the measurements of temperatures, flow rates and pressure drops. A correlation in a power-law relationship of the Nusselt number, Reynolds number and Prandtl number for the heat transfer was proposed which can be available for design of cryogenic heat exchangers. The correlation showed that heat transfer coefficients for the wire-coil inserts were much higher than those for plain tubes, increased by more than $1.8{\sim}2.0$ times depending upon the range of the equivalent Reynolds number. The correlation was compared with other various correlations in the turbulent flow conditions.

Manufacturing Powder Extrusion Die and Experiment for Fabrication of Miniature Helical-Gears (소형 헬리컬 기어 제조를 위한 분말 압출 금형 제작 및 실험)

  • Hwang, D.W.;Lee, K.H.;Kim, B.M.
    • Transactions of Materials Processing
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    • v.19 no.5
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    • pp.283-289
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    • 2010
  • Extrusion process in the bulk material for fabrication of miniature helical gears has problems such as a high forming load and short tool life because the cross-section is complex and asymmetry. To overcome these problems, in this study, miniature helical gears were fabricated by Zn-22Al powder hot extrusion. The included die angle for minimum extrusion load and improving die filling was determined by FE-simulation. The Zn-22Al spheroidal powder produced by gasatomization were compacted and sintered for extrusion experiment. The dimension of helical-gear is 0.3mm in module, 3.35mm in pitch diameter, $15^{\circ}$ in helix angle and the number of teeth is 12. All of the extrusion experiments were performed with internal helical gear die which was machined by precision electric discharge machining using the electrode. The experiment was conducted at $190^{\circ}C$ to $310^{\circ}C$ to obtain extrusive and mechanical properties. The extruded helical gears were analyzed through extrusion load, Vickers hardness and SEM images for each extrusion temperature. The powder hot extrusion process was successfully applied to fabricate a miniature helical gear.

Violetonostoc minutum gen. et sp. nov. (Nostocales, Cyanobacteria) from a rocky substrate in China

  • Cai, Fangfang;Peng, Xin;Li, Renhui
    • ALGAE
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    • v.35 no.1
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    • pp.1-15
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    • 2020
  • Two strains isolated from a subtropical region in China, were morphologically identified as a Nostoc-like species, but its taxonomic identity was unknown. In this study, these two strains were taxonomically and phylogenetically characterized based on polyphasic approach combining morphological and genetic characteristics. Though both were virtually indistinguishable from Nostoc in field and cultured material, these two strains were phylogenetically distinct from Nostoc based on 16S rRNA phylogeny. The 16S-23S internal transcribed spacer rRNA secondary structure of these strains showed the unique pattern of D1-D1', Box-B, and V3 helix, which distinguished them from other Nostoc-like heterocytous genera. A unique cluster separated from Nostoc sensu stricto supports the establishment of Violetonostoc gen. nov. with the type species as Violetonostoc minutum sp. nov.