• 제목/요약/키워드: $\beta$-tubulin gene

검색결과 109건 처리시간 0.024초

경기도 연천비무장지대 근역에서 분리한 국내 미기록 Eupenicillium, Mortierella, Trichoderma 진균 종 보고 (Undescribed Fungal Species of Eupenicillium, Mortierella, and Trichoderma Isolated in the Vicinity of Demilitarized Zone in Yeoncheon-gun, Gyeonggi-do, Korea)

  • 안금란;김지은;오윤석;이경민;진협;김민욱;김준영;김성환
    • 한국균학회지
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    • 제46권4호
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    • pp.359-367
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    • 2018
  • 비무장지대 일원의 진균 다양성을 연구하기 위한 일환으로 경기도 연천군 마전리에 있는 산과 황진리에 있는 임진강변에서 11가지 식물체 시료와 토양시료 2개를 채집하여 진균을 분리 동정하였다. 그 결과 총 18속 23종의 진균을 확인하였다. 이 중 Eupenicilliumsaturniforme, Mortierellasclerotiella, M. sossauensis, M. verticillate, Trichoderma hispanicum등 5종의 진균이 국내에 보고가 되어있지 않는 미기록 종이었다. 본 연구에서 이들의 형태적, 분자적 특성을 기술하였다.

Two Unrecorded Apiospora Species Isolated from Marine Substrates in Korea with Eight New Combinations (A. piptatheri and A. rasikravindrae)

  • Kwon, Sun Lul;Cho, Minseo;Lee, Young Min;Kim, Changmu;Lee, Soo Min;Ahn, Byoung Jun;Lee, Hanbyul;Kim, Jae-Jin
    • Mycobiology
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    • 제50권1호
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    • pp.46-54
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    • 2022
  • Although Apiospora Sacc. has previously been considered a sexual morph of Arthrinium species on the basis of phylogenetic, morphological, and ecological diagnoses, a recent study delimited these as different species. Recently, 14 species, including eight new species, of marine Arthrinium have been reported from Korea. Six known species have previously been renamed as species in the genus Apiospora (A. arundinis, A. marii, A. piptatheri, A. rasikravindrae, A. sacchari, and A. saccharicola). However, the eight new species of marine Arthrinium (Ar. agari, Ar. arctoscopi, Ar. fermenti, Ar. koreanum, Ar. marinum, Ar. pusillispermum, Ar. sargassi, and Ar. taeanense) are yet to be studied, and thus the taxonomic status of these species remains to be clarified. In this study, we conducted phylogenetic analyses using the internal transcribed spacer, 28S large subunit ribosomal RNA gene, translation elongation factor 1-alpha, and beta-tubulin regions to confirm the phylogenetic position of these eight species. Based on these analyses, we re-identified the eight Arthrinium species as new combinations in Apiospora. Additionally, among the six known Apiospora species, two (A. piptatheri and A. rasikravindrae) have not previously been recorded in Korea. On the basis of morphological and molecular analyses, we report these as new species in Korea. Herein, we present scanning electron micrographs detailing the morphologies of these species, along with phylogenetic trees and detailed descriptions.

Identification and classification of pathogenic Fusarium isolates from cultivated Korean cucurbit plants

  • Walftor Bin Dumin;You-Kyoung Han;Jong-Han Park;Yeoung-Seuk Bae;Chang-Gi Back
    • 농업과학연구
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    • 제49권1호
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    • pp.121-128
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    • 2022
  • Fusarium wilt disease caused by Fusarium species is a major problem affecting cultivated cucurbit plants worldwide. Fusarium species are well-known soil-borne pathogenic fungi that cause Fusarium wilt disease in several cucurbit plants. In this study, we aimed to identify and classify pathogenic Fusarium species from cultivated Korean cucurbit plants, specifically watermelon and cucumber. Thirty-six Fusarium isolates from different regions of Korea were obtained from the National Institute of Horticulture and Herbal Science Germplasm collection. Each isolate was morphologically and molecularly identified using an internal transcribed spacer of ribosomal DNA, elongation factor-1α, and the beta-tubulin gene marker sequence. Fusarium species that infect the cucurbit plant family could be divided into three groups: Fusarium oxysporum (F. oxysporum), Fusarium solani (F. solani), and Fusarium equiseti (F. equieti). Among the 36 isolates examined, six were non-pathogenic (F. equiseti: 15-127, F. oxysporum: 14-129, 17-557, 17-559, 18-369, F. solani: 12-155), whereas 30 isolates were pathogenic. Five of the F. solani isolates (11-117, 14-130, 17-554, 17-555, 17-556) were found to be highly pathogenic to both watermelon and cucumber plants, posing a great threat to cucurbit production in Korea. The identification of several isolates of F. equiseti and F. oxysporum, which are both highly pathogenic to bottle gourd, may indicate waning resistance to Fusarium species infection.

Genetic disruption of ATAT1 causes RhoA downregulation through abnormal truncation of C/EBPβ

  • Jee-Hye Choi;Jangho Jeong;Jaegu Kim;Eunae You;Seula Keum;Seongeun Song;Ye Eun Hwang;Minjoo Ji;Kwon-Sik Park;Sangmyung Rhee
    • BMB Reports
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    • 제57권6호
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    • pp.293-298
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    • 2024
  • Microtubule acetylation has been shown to regulate actin filament dynamics by modulating signaling pathways that control actin organization, although the precise mechanisms remain unknown. In this study, we found that the downregulation of microtubule acetylation via the disruption ATAT1 (which encodes α-tubulin N-acetyltransferase 1) inhibited the expression of RhoA, a small GTPase involved in regulating the organization of actin filaments and the formation of stress fibers. Analysis of RHOA promoter and chromatin immunoprecipitation assays revealed that C/EBPβ is a major regulator of RHOA expression. Interestingly, the majority of C/EBPβ in ATAT1 knockout (KO) cells was found in the nucleus as a 27-kDa fragment (referred to as C/EBPβp27) lacking the N-terminus of C/EBPβ. Overexpression of a gene encoding a C/EBPβp27-mimicking protein via an N-terminal deletion in C/EBPβ led to competitive binding with wild-type C/EBPβ at the C/EBPβ binding site in the RHOA promoter, resulting in a significant decrease of RHOA expression. We also found that cathepsin L (CTSL), which is overexpressed in ATAT1 KO cells, is responsible for C/EBPβp27 formation in the nucleus. Treatment with a CTSL inhibitor led to the restoration of RHOA expression by downregulation of C/EBPβp27 and the invasive ability of ATAT1 KO MDA-MB-231 breast cancer cells. Collectively, our findings suggest that the downregulation of microtubule acetylation associated with ATAT1 deficiency suppresses RHOA expression by forming C/EBPβp27 in the nucleus through CTSL. We propose that CTSL and C/EBPβp27 may represent a novel therapeutic target for breast cancer treatment.

크립토스포리디움 활성 및 감염성 판정을 위한 direct RT-PCR, cell culture RT-PCR 및 cell culture IFA의 비교 (Comparison of Direct RT-PCR, Cell Culture RT-PCR and Cell IFA for Viability and Infectivity Assay of Cryptosporidium)

  • 박상정;유재란;김종민;임연택;진익렬;정현미
    • 생명과학회지
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    • 제16권5호
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    • pp.729-733
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    • 2006
  • 크립토스포리디움의 활성 및 감염성 판정을 위해 Direct RT-PCR, 세포배양 후 RT-PCR 및 면역형광염색법을 비교한 결과는 다음과 같다. 1) 크립토스포리디움의 HSP70 gene에 대해 direct RT-PCR한 결과, 민감도가 매우 높아 저농도로 존재하는 환경시료에서의 크립토스포리디움 활성을 모니터링하는데 장점이 있을 것으로 보이나, 감염성의 판정은 알 수 없으며, 정량화가 안되는 단점이 있었다. 2) ${\beta}-tubulin$ gene에 대해 RT-nested PCR을 한 결과 크립 토스포리디움의 난포낭이 $1{\times}10^4$ 세포수정도 되어야 검출이 되는 것으로 나타나 HSP70 gene에 대한 RT-PCR결과와 비교할 때 10,000배 이상 민감도가 떨어지는 것으로 나타났다. 3) 세포배양 후 RT-PCR 또는 면역형광염색법을 이용할 경우에는 민감도가 direct RT-PCR보다 다소 떨어지는 단점이 있었으나 크립토스포리디움의 오염원이나 오염이 심한 지역의 감염성 조사에 적합할 것으로 나타났으나, 정량화가 필요한 경우에는 세포배양 후 면역형광염색법이 효과적일 것으로 나타났다.

Human Embryonic Stem Cells Co-Transfected with Tyrosine Hydroxylase and GTP Cyclohydrolase I Relieve Symptomatic Motor Behavior in a Rat Model of Parkinson′s Disease

  • Kil, Kwang-Soo;Lee, Chang-Hyun;Shin, Hyun-Ah;Cho, Hwang-Yoon;Yoon, Ji-Yeon;Lee, Gun-Soup;Lee, Young-Jae;Kim, Eun-Young;Park, Se-Pill
    • 한국발생생물학회:학술대회논문집
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    • 한국발생생물학회 2003년도 제3회 국제심포지움 및 학술대회
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    • pp.101-101
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    • 2003
  • Main strategy for a treatment of Parkinson's disease (PD), due to a progressive degeneration of dopaminergic neurons, is a pharmaceutical supplement of dopamine derivatives or ceil replacement therapy. Both of these protocols have pros and cons; former exhibiting a dramatic relief but causing a severe side effects on long-term prescription and latter also having a proven effectiveness but having availability and ethical problems Embryonic stem (ES) cells have several characteristics suitable for this purpose. To investigate a possibility of using ES cells as a carrier of therapeutic gene(s), human ES (hES, MB03) cells were transfected with cDNAs coding for tyrosine hydroxylase (TH) in pcDNA3.1 (+) and the transfectants were selected using neomycin (250 $\mu /ml$). Expression of TH being confirmed, two of the positive clone (MBTH2 & 8) were second transfected with GTP cyclohydrolase 1 (GTPCH 1) in pcDNA3.1 (+)-hyg followed by selection with hygromycin-B (150 $\mu /ml$) and RT-PCR confirmation. By immune-cytochemistry, these genetically modified but undifferentiated dual drug-resistant cells were found to express few of the neuronal markers, such as NF200, $\beta$-tubulin, and MAP2 as well as astroglial marker GFAP. This results suggest that over-production of BH4 by ectopically expressed GTPCH I may be involved in the induction of those markers. Transplantation of the cells into striatum of 6-OHDA- denervated PD animal model relieved symptomatic rotational behaviors of the animals. Immunohistochemical analyses showed the presence of human cells within the striatum of the recipients. These results suggest a possibility of using hES cells as a carrier of therapeutic gene(s).

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Aspergillus flavus Y2H001의 식물생육촉진과 Gibberellin A3의 생산 (Plant Growth Promotion and Gibberellin A3 Production by Aspergillus flavus Y2H001)

  • 유영현;박종명;강상모;박종한;이인중;김종국
    • 한국균학회지
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    • 제43권3호
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    • pp.200-205
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    • 2015
  • 경상북도 성주군의 농경지에서 자생하는 들깨를 채집하여 이로부터 형태학적으로 상이한 15개의 내생진균을 순수 분리하였다. 이들의 배양여과액을 이용하여 난장이벼의 유묘에 처리하여 식물생장촉진 활성을 조사한 결과, 이들 중 Y2H001균주가 식물생장활성이 가장 우수한 것으로 나타났다. Y2H001균주의 ITS영역 염기서열과 ${\beta}$-tubulin 유전자 염기서열을 사용하여 계통학적 유연관계를 확인하였으며, 이러한 분자계통학적 분석 및 형태학적 관찰을 통해 Aspergillus flavus로 동정되었다. 또한 A. flavus Y2H001균주의 배양여과액을 GC/MS를 통하여 분석하였고 식물생장을 촉진하는 원인물질로 $GA_3$ (1.954 ng/mL)를 생산하는 것을 확인하였다.

Serological and Molecular Detection of Toxoplasma gondii and Babesia microti in the Blood of Rescued Wild Animals in Gangwon-do (Province), Korea

  • Hong, Sung-Hee;Kim, Hee-Jong;Jeong, Young-Il;Cho, Shin-Hyeong;Lee, Won-Ja;Kim, Jong-Tak;Lee, Sang-Eun
    • Parasites, Hosts and Diseases
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    • 제55권2호
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    • pp.207-212
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    • 2017
  • Infections of Toxoplasma gondii and Babesia microti are reported in many wild animals worldwide, but information on their incidence and molecular detection in Korean wild fields is limited. In this study, the prevalence of T. gondii and B. microti infection in blood samples of 5 animal species (37 Chinese water deer, 23 raccoon dogs, 6 roe deer, 1 wild boar, and 3 Eurasian badgers) was examined during 2008-2009 in Gangwon-do (Province), the Republic of Korea (=Korea) by using serological and molecular tests. The overall seropositivity of T. gondii was 8.6% (6/70); 10.8% in Chinese water deer, 4.3% in raccoon dogs, and 16.7% in roe deer. PCR revealed only 1 case of T. gondii infection in Chinese water deer, and phylogenic analysis showed that the positive isolate was practically identical to the highly pathogenetic strain type I. In B. microti PCR, the positive rate was 5.7% (4/70), including 2 Chinese water deer and 2 Eurasian badgers. Phylogenetic analysis results of 18S rRNA and the ${\beta}$-tubulin gene showed that all positive isolates were US-type B. microti. To our knowledge, this is the first report of B. microti detected in Chinese water deer and Eurasian badger from Korea. These results indicate a potentially high prevalence of T. gondii and B. microti in wild animals of Gangwon-do, Korea. Furthermore, Chinese water deer might act as a reservoir for parasite infections of domestic animals.

파밤나방의 미생물적 방제를 위한 병원성 곰팡이 Nomuraea rileyi의 특성 및 병원성 검정 (Characteristics and Virulence Assay of Entomopathogenic Fungus Nomuraea rileyi for the Microbial Control of Spodoptera exigua (Lepidoptera: Noctuidae))

  • 이원우;신태영;고승현;최재방;배성민;우수동
    • 미생물학회지
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    • 제48권4호
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    • pp.284-292
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    • 2012
  • 파밤나방(Spodoptera exigua)은 유기합성 농약을 이용한 화학 살충제 외에 뚜렷한 방제방법이 알려져 있지 않으나, 그에 대한 저항성과 더불어 식물을 가해하는 방법에 있어 그들만의 독특한 숙주 가해습성으로 인해 난방제 해충으로 알려져 있다. 화학살충제에 대한 저항성의 해결을 위하여 곤충병원성 바이러스 및 세균을 이용한 살충제가 개발되어 있으나, 이들 역시 파밤나방 유충이 줄기 속으로 들어가는 가해습성으로 인하여 효과적이지 못한 실정이다. 그러므로 본 연구에서는 그들의 가해습성과 저항성을 극복할 수 있는 새로운 방제원으로써, 체벽과의 일시적인 접촉을 통해 살충성을 발휘할 수 있는 파밤나방에 대한 병원성 곰팡이를 분리하고 그 특성 및 살충성을 조사하였다. 파밤나방 병원성 곰팡이는 파밤나방 누대사육 중 곰팡이병 증상을 보이며 이병된 사충으로부터 분리하였으며, 분리 곰팡이는 배지에서의 증식상 및 현미경적 관찰을 통한 형태학적 동정과 더불어 ITS, ${\beta}$-tublin 및 EF1-${\alpha}$ 부분의 염기서열 분석을 통해 Nomuraea rileyi로 최종 동정하고 N. rileyi SDSe로 명명하였다. 분리 균주의 파밤나방에 대한 살충력 검정은 $1{\times}10^4-10^8conidia/ml$까지의 다양한 포자현탁액에 파밤나방 3령 유충을 침지하는 조건으로 수행한 결과, 20-54%의 살충률을 나타냈으며 포자현탁액의 농도가 증가할수록 살충력도 증가하는 양상을 나타냈다. 본 연구결과 분리된 N. rileyi 균주가 비록 높은 살충력을 보이지 않았으나, 파밤나방이 난방제 해충임을 감안할 때 다른 방제방법과 함께 종합적 해충 방제 방법에 있어 효과적인 방제수단의 일환이 될 수 있을 것으로 기대된다.