References
- Altschul, S. F., T. L. Madden, A. A. Schaffer, J. Zhang, Z. Zhang, D. J. Miller, and M. Lipman. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acid Res. 25: 3389-3402. https://doi.org/10.1093/nar/25.17.3389
- Ashburner, M., C. A. Ball, J. A. Blake, D. Botstein, H. Butler, J. M. Cherry, et al. 2000. Gene ontology: Tool for the unification of biology. Nat. Genet. 25: 25-29. https://doi.org/10.1038/75556
- Audic, S. and J. M. Claverie. 1997. The significance of digital gene expression profiles. Genome Res. 7: 986-995.
- Baumert, M., P. R. Maycox, F. Navone, P. De Camilli, and R. Jahn. 1989. Synaptobrevin: An integral membrane protein of 18,000 daltons present in small synaptic vesicles of rat brain. EMBO J. 8: 379-384.
- Bendtsen, J. D., H. Nielsen, G. V. Heijne, and S. Brunak. 2004. Improved prediction of signal peptides: SignalP 3.0. J. Mol. Biol. 340: 783-795. https://doi.org/10.1016/j.jmb.2004.05.028
- Clausen, C. A. and F. Green III. 1996. Characterization of polygalacturonase from the brown-rot fungus Postia placenta. Appl. Microbiol. Biotechnol. 45: 750-754. https://doi.org/10.1007/s002530050758
- Conesa, A., S. Gotz, J. M Garcia-Gomez, J. Terol, M. Talon, and M. Robles. 2005. Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21: 3674-3676. https://doi.org/10.1093/bioinformatics/bti610
- Dederich, D. A., G. Okwuonu, T. Garner, A. Denn, A. Sutton, M. Escotto, et al. 2002. Glass bead purification of plasmid template DNA for high throughput sequencing of mammalian genomes. Nucleic Acids Res. 30: e32. https://doi.org/10.1093/nar/30.7.e32
- Freimoser, F. M., S. Screen, S. Bagga, G. Hu, and R. J. St. Leger. 2003. Expressed sequence tag (EST) analysis of two subspecies of Metarhizium anisopliae reveals a plethora of secreted proteins with potential activity in insect hosts. Microbiology 149: 239-247. https://doi.org/10.1099/mic.0.25761-0
- Galagan, J. E., M. R Henn, L. J. Ma, C. A. Cuomo, and B. Birren. 2005. Genomics of the fungal kingdom: Insight into eukaryotic biology. Genome Res. 15: 1620-1631. https://doi.org/10.1101/gr.3767105
- Goffeau, A., B. G. Barrell, H. Bussey, R. W. Davis, B. Dujon, H. Feldmann, et al. 1996. Life with 6000 genes. Science 274: 546, 563-567.
- Green III, F. and T. L. Highley. 1997. Mechanism of brown-rot decay: Paradigm or paradox. Int. Biodeterior. Biodegrad. 39: 113-124. https://doi.org/10.1016/S0964-8305(96)00063-7
- Green, F., C. A. Clausen, T. A. Kuster, and T. L. Highley. 1995. Induction of polygalacturonase and the formation of oxalic acid by pectin in bown-rot fungi. World J. Microbiol. Biotechnol. 11: 519-524. https://doi.org/10.1007/BF00286366
- Henrissat, B. and A. Bairoch. 1993. New families in the classification of glycosyl hydrolases based on amino acid sequence similarities. Biochem. J. 293: 781-788.
- Hishida, A., T. Suzuki, T. Iijima, and M. Higaki. 1997. An extracellular cellulase of the brown-rot fungus, Tyromyces palustris. Mokuzai Gakkaishi 43: 686-691.
- Igarashi, K., T. Ishida, C. Hori, and M. Samejima. 2008. Characterization of an endoglucanase belonging to a new subfamily of glycoside hydrolase family 45 of the basidiomycete Phanerochaete chrysosporium. Appl. Environ. Microbiol. 74: 5628-5634. https://doi.org/10.1128/AEM.00812-08
- Ishihara, M. and K. Shimizu. 1980. Hemicellulases of brown rotting fungus, Tyromyces palustris. IV. Purification and some properties of an extracellular mannanase. Mokuzai Gakkaishi 26: 811-818.
-
Ishihara, M. and K. Shimizu. 1983. Purification and some properties of an extracellular
$\beta$ -D-xylosidase and$\beta$ -D-glucosidase complex. Mokuzai Gakkaishi 29: 315-323. - Ishihara, M. and K. Shimizu. 1984. Purification and properties of two extracellular endo-cellulases from the brown rotting fungus, Tyromyces palustris. Mokuzai Gakkaishi 30: 79-87.
- Ishihara, M., K. Shimizu, and T. Ishihara. 1978. Hemicellulases of brown rotting fungus, Tyromyces palustris. III. Partial purification and mode of action of an extracellular xylanase. Mokuzai Gakkaishi 24: 108-115.
- Kamper, J., R. Kahmann, M. Bolker, L. J. Ma, T. Brefort, B. J. Saville, et al. 2006. Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis. Nature 444: 97-101. https://doi.org/10.1038/nature05248
- Kawai, R., K. Igarashi, M. Yoshida, M. Kitaoka, and M. Samejima. 2006. Hydrolysis of beta-1,3/1,6-glucan by glycoside hydrolase family 16 endo-1,34-beta-glucanase from the basidiomycete Phanerochaete chrysosporium. Appl. Microbiol. Biotechnol. 71: 898-906. https://doi.org/10.1007/s00253-005-0214-4
- Keon, J., J. Antoniw, J. Rudd, W. Skinner, J. Hargreaves, and K. Hammond-Kosack. 2005. Analysis of expressed sequence tags from the wheat leaf blotch pathogen Mycosphaerella graminicola anamorph Septoria tritici. Fungal Genet. Biol. 42: 376-389. https://doi.org/10.1016/j.fgb.2004.12.005
- Kerem, Z., K. A. Jensen, and K. E. Hammel. 1999. Biodegradative mechanism of the brown rot basidiomycete Gleophyllum trabeum: Evidence for an extracellular hydroquinone-driven Fenton reaction. FEBS Lett. 446: 49-54. https://doi.org/10.1016/S0014-5793(99)00180-5
- Kupfer, D. M., S. D. Drabenstot, K. L. Buchanan, H. Lai, H. Zhu, W. D Dyer, et al. 2004. Introns and splicing elements of five diverse fungi. Eukaryot. Cell 3: 1088-1100. https://doi.org/10.1128/EC.3.5.1088-1100.2004
- Loftus, B. J., E. Fung, P. Roncaglia, D. Rowley, P. Amedeo, D. Bruno, et al. 2005. The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans. Science 307: 1321-1324. https://doi.org/10.1126/science.1103773
- Martin, F., A. Aerts, D. Ahrén, A. Brun, E. G. Danchin, F. Duchaussoy, et al. 2008. The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis. Nature 452: 88- 92. https://doi.org/10.1038/nature06556
- Martinez, D., L. F. Larrondo, N. Putnam, M. D. Gelpke, K. Huang, K. J. Chapman, et al. 2004. Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78. Nature Biotechnol. 22: 695-700. https://doi.org/10.1038/nbt967
- Martinez. D., J. Challacombe, I. Morgenstern, D. Hibbett, M. Schmoll, C. P. Kubicek, et al. 2009. Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion. P. Natl. Acad. Sci. USA 106: 1954-1959. https://doi.org/10.1073/pnas.0809575106
- Neumann, M. J. and K. F. Dobinson. 2003. Sequence tag analysis of gene expression during pathogenic growth and microsclerotia development in the vascular wilt pathogen Verticillium dahliae. Fungal Genet. Biol. 38: 54-62. https://doi.org/10.1016/S1087-1845(02)00507-8
-
Niemenmaa, O., A. Uusi-Rauva, and A. Hatakka. 2007. Demethoxylation of
$[O^{14}CH_3]$ -labelled lignin model compounds by the brown-rot fungi Gloeophyllum trabeum and Poria Postia placenta. Biodegradation 19: 555-565. - Panabieres, F., J. Amselem, E. Galiana, and J. Y. Le Berre. 2005. Gene identification in the oomycete pathogen Phytophthora parasitica during in vitro vegetative growth through expressed sequence tags. Fungal Genet. Biol. 42: 611-623. https://doi.org/10.1016/j.fgb.2005.03.002
- Parkinson, J., A. Anthony, J. Wasmuth, R. Schmid, A. Hedley, and M. Blaxter. 2004. PartiGene--constructing partial genomes. Bioinformatics 20: 1398-1404. https://doi.org/10.1093/bioinformatics/bth101
- Parkinson, J., D. B. Guiliano, and M. Blaxter. 2002. Making sense of EST sequences by CLOBBing them. BMC Bioinformatics 3: 31. https://doi.org/10.1186/1471-2105-3-31
- Ribichich, K. F., S. M. Salem-Izacc, R. C. Georg, R. Z. Vencio, L. D. Navarro, and S. L. Gomes. 2005. Gene discovery and expression profile analysis through sequencing of expressed sequence tags from different developmental stages of the chytridiomycete Blastocladiella emersonii. Eukaryot. Cell 4: 455-464. https://doi.org/10.1128/EC.4.2.455-464.2005
- Rudd, S. 2003. Expressed sequence tags: Alternative or complement to whole genome sequence? Trends Plant Sci. 8: 321-329. https://doi.org/10.1016/S1360-1385(03)00131-6
- Sacadura, N. T. and B. J. Saville. 2003. Gene expression and EST analyses of Ustilago maydis germinating teliospores. Fungal Genet. Biol. 40: 47-64. https://doi.org/10.1016/S1087-1845(03)00078-1
- Saloheimo, A., B. Henrissat, A. M. Hoffrén, O. Teleman, and M. Penttilä. 1994. A novel, small endoglucanase gene, egl5, from Trichoderma reesei isolated by expression in yeast. Mol. Microbiol. 3: 219-228.
- Shanley, N. A., L. A. M. van den Broek, A. G. J. Voragen, and M. P. Coughlan. 1993. Isolation and characterization of an endopolygalacturonase from Phanerochaete chrysosporium. J. Biotechnol. 28: 179-197. https://doi.org/10.1016/0168-1656(93)90169-N
- Shimokawa, T., H. Shibuya, M. Nojiri, S. Yoshida, and M. Ishihara. 2008. Purification, molecular cloning, and enzymatic properties of a family 12 endoglucanase EG-II from Fomitopsis palustris: role of EG-II in larch holocellulose hydrolysis. Appl. Environ. Microb. 74: 5857-5861. https://doi.org/10.1128/AEM.00435-08
- Skinner, W., J. Keon, and J. Hargreaves. 2001. Gene information for fungal plant pathogens from expressed sequences. Curr. Opin. Microbiol. 4: 381-386. https://doi.org/10.1016/S1369-5274(00)00221-6
- Song, B. C., K. Y. Kim, J. J. Yoon, S. H. Sim, K. Lee, Y. S. Kim, et al. 2008. Functional analysis of a gene encoding endoglucanase that belongs to glycosyl hydrolase family 12 from the brown-rot basidiomycete Fomitopsis palustris. J. Microbiol. Biotechnol. 18: 404-409.
- Tamura, K., J. Dudley, M. Nei, and S. Kumar. 2007. MEGA4: Molecular Evolutionary Genetics Analysis MEGA software version 4.0. Mol. Biol. Evol. 24: 1596-1599. https://doi.org/10.1093/molbev/msm092
- Tschernitz, J. L. 1973. Enzyme mixture improves creosote treatment of kiln-dried Rocky Mountain Douglas-fir. Forest Products J. 23: 30-38.
- Tsunoda, K, K. Nagashima, and M. Takahashi. 1997. High tolerance of wood-destroying fungi to copper-based fungicides. Mater Organic 31: 31-41.
- Vazquez-Garciduenas, S., C. A. Leal-Morales, and A. Herrera- Estrella. 1998. Analysis of the beta-1,3-Glucanolytic System of the Biocontrol Agent Trichoderma harzianum. Appl. Environ. Microb. 64: 1442-1446.
- Viaud, M., F. Legeai, J. M. Pradier, Y. Brygoo, F. Bitton, J. Weissenbach, et al. 2005. Expressed sequence tags from the phytopathogenic fungus Botrytis cinerea. Eur. J. Plant Pathol., 111: 139-146. https://doi.org/10.1007/s10658-004-1429-4
- Watanabe, T., T. Fujiwara, T. Umezawa, M. Shimada, and T. Hattori. 2008. Cloning of a cDNA encoding a NAD-dependent formate dehydrogenase involved in oxalic acid metabolism from the white-rot fungus Ceriporiopsis subvermispora and its gene expression analysis. FEMS Microb. Lett. 279: 64-70. https://doi.org/10.1111/j.1574-6968.2007.01022.x
- Wu, B., G. K. Hu, H. Feng, J. M. Wu, and Y. Z. Zhang. 2007. Cloning and expression of an alpha-amylase gene from Phanerochaete chrysosporium. Current Microbiology 55: 105- 113. https://doi.org/10.1007/s00284-006-0600-x
- Yelle, D. J., J. Ralph. F. Lu, and K. E. Hammel. 2008. Evidence for cleavage of lignin by a brown rot basidiomycete. Environ. Microbiol. 10: 1844-1849. https://doi.org/10.1111/j.1462-2920.2008.01605.x
- Yockteng, R., S. Marthey, H. Chiapello, A. Gendrault, M. E. Hood, F. Rodolphe, et al. 2007. Expressed sequences tags of the anther smut fungus, Microbotryum violaceum, identify mating and pathogenicity genes. BMC Genomics 8: 272. https://doi.org/10.1186/1471-2164-8-272
- Yoon, J. J., C. J. Cha, Y. S. Kim, D. W. Son, and Y. K. Kim. 2007. The brown-rot basidiomycete Fomitopsis palustris has the endo-glucanases capable of degrading microcrystalline cellulose. J. Microbiol. Biotechnol. 17: 800-805.
- Yoon, J. J. and Y. K. Kim. 2005. Degradation of crystalline cellulose by the brown-rot basidiomycete Fomitopsis palustris. J. Microbiol. 43: 487-492.
- Yoon, J. J., K. Igarashi, T. Kajisa, and M. Samejima. 2006. Purification, identification and molecular cloning of glycoside hydrolase family 15 glucoamylase from the brown-rot basidiomycete Fomitopsis palustris. FEMS Microbiol. Lett. 259: 288-294. https://doi.org/10.1111/j.1574-6968.2006.00279.x
- Yoon, J. J., K. Y. Kim, and C. J. Cha. 2008. Purification and characterization of thermostable beta-glucosidase from the brownrot basidiomycete Fomitopsis palustris grown on microcrystalline cellulose. J. Microbiol. 46: 51-55. https://doi.org/10.1007/s12275-007-0230-4
- Zhao, H. and D. Eide. 1996a. The yeast ZRT1 gene encodes the zinc transporter of a high affinity uptake system induced by zinc limitation. P. Natl. Acad. Sci. USA 93: 2454-2458. https://doi.org/10.1073/pnas.93.6.2454
- Zhao, H. and D. Eide. 1996b. The ZRT2 gene encodes the low affinity zinc transporter in Saccharomyces cerevisiae. J. Biol. Chem. 271: 23203-23210. https://doi.org/10.1074/jbc.271.38.23203
- Zhao, H. and D. Eide. 1997. Zap1p, a metalloregulatory protein involved in zinc responsive transcriptional regulation in Saccharomyces cerevisiae. Mol. Cell Biol. 17: 5044-5052.
Cited by
- Functional characterization of a thermostable endoglucanase belonging to glycoside hydrolase family 45 from Fomitopsis palustris vol.102, pp.15, 2011, https://doi.org/10.1007/s00253-018-9075-5
- Trees, fungi and bacteria: tripartite metatranscriptomics of a root microbiome responding to soil contamination vol.6, pp.1, 2011, https://doi.org/10.1186/s40168-018-0432-5