• Journal of Plant Biotechnology
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• v.7 no.1
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• pp.17-25
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• 2005

We have mined each of the five A. thaliana chromosomes for the presence of simple sequence repeats (SSRs) and developed custom perl scripts to examine their distribution and abundance in relation to genomic position, local G/C content and location within and around transcribed sequences. The distribution of repeats and G/C content with respect to genomic regions (exons, UTRs, introns, intergenic regions and proximity to expressed genes) are shown. SSRs show a non-random distribution across the genome and a strong association within and around transcribed sequences, while G/C density is associated specifically with the coding portions of transcribed sequences. SSR motif repeat number shows a high degree of variation for each SSR type and a high degree of motif sequence bias reflecting local genome sequence composition. PCR primers suitable for the amplification of identified SSRs have been designed where possible, and are available for further studies.

• The Plant Pathology Journal
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• v.39 no.6
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• pp.529-537
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• 2023

Plant pathogenic bacteria colonize plant surfaces and inner tissues to acquire essential nutrients. Nonstructural sugars hold paramount significance among these nutrients, as they serve as pivotal carbon sources for bacterial sustenance. They obtain sugar from their host by diverting nonstructural carbohydrates en route to the sink or enzymatic breakdown of structural carbohydrates within plant tissues. Despite the prevalence of research in this domain, the area of sugar selectivity and preferences exhibited by plant pathogenic bacteria remains inadequately explored. Within this expository framework, our present review endeavors to elucidate the intricate variations characterizing the distribution of simple sugars within diverse plant tissues, thus influencing the virulence dynamics of plant pathogenic bacteria. Subsequently, we illustrate the apparent significance of comprehending the bacterial preference for specific sugars and sugar alcohols, postulating this insight as a promising avenue to deepen our comprehension of bacterial pathogenicity. This enriched understanding, in turn, stands to catalyze the development of more efficacious strategies for the mitigation of plant diseases instigated by bacterial pathogens.

• Journal of Environmental Impact Assessment
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• v.18 no.1
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• pp.51-57
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• 2009

Corylopsis coreana Uyeki is endemic species in the Korean peninsula and is designated a Category Endangered Plant Species by the Wildlife Protection Act of South Korea. We developed the plan and cooperative model within the local community for the species conservation. In order to carry out this plan we first investigated the ecological characteristics of the species. The species shows patterns of discontinuous distribution and is coupled with the unusual feature of only growing on northern exposed slopes. Although Corylopsis coreana is cut the stem every year, many new sprouts are still grown from the root. Natural germination of the seed occurs only on north-facing slopes, but not on south-facing slopes at spring. That is, the species is highly influenced by soil moisture until the seedling stage has been reached. This factor limits the distribution of the species. When saplings are planted on south-facing slopes, they grow well. The information we gathered greatly helped with efforts to draw up conservation plans. In addition, when the information was shared with the local community, builders and residents showed great interest and displayed a will to help with conservation efforts. Therefore, a cooperative model within the local community was drawn up for the conservation of the species. Accordingly this model could be applied at mitigation measure at environment impact assessment.

• Journal of Plant Biology
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• v.38 no.4
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• pp.329-336
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• 1995

Raphanus sativus L. var. hortensis f. raphanistroides (wild radish: Brassicaceae), a herbaceous perennial, occurs only on beaches in East Asia. Genetic diversity and population structure of seven Korean populations were investigated using starch gel electrophoresis. Although the Korean populatins are small, isolated with patchy distribution, the population maintain a moderate level of genetic diversity; the mean percentage fo polymorphic loci was 51.4%, mean number of alleles per locus was 1.84, and mean expected heterozygosity was 0.116. A combination of animal-outcrossing breeding system, wide geographical distribution, restricted ecological distribution, and a propensity for high fecundity may in part be explanatory factors contributing the moderate level of genetic diversity within populations. An overall excess of homozygotes relative to Hardy-Weinberg expetations (mean FISa=0.116) indicates that consanguineous mating occur within wild radish populations, leading to a family structure within a circumscribed area. Although population of wild radish experience a limited gene flow, only 5% of the total genetic variation found in Korean wild radish populations examined is due to differences among populations (mean GST=0.052). This value is considerably lower than the mean values of species with similar life history and ecological characteristics. However, significant differences were found in allele frequencies between populations for all polymorphic loci (P<0.01). It is supposed that directional selection toward genetic uniformity (similar gene frequencies) in a relatively homogenous habitat is thought to be operated among Korean wild radish populations.

• The Plant Pathology Journal
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• v.38 no.2
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• pp.78-89
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• 2022

Phaeosphaeria species are pathogenic on wheat, barley and a wide range of wild grasses. To analyze mating type loci of the Phaeosphaeria species and investigate mating type distribution in Iran, we sequenced mating type loci of 273 Phaeosphaeria isolates including 67 isolates obtained from symptomatic leaves and ears of wheat, barley, and wild grasses from two wheat growing region in Iran as well as 206 isolates from our collection from other regions in Iran which were isolated in our previous studies. Mating type genes phylogeny was successfully used to determine the species identity and relationships among isolates within the Phaeosphaeria spp. complex. In this study, we reported seven new host records for Phaeosphaeria species and the Phaeosphaeria avenaria f. sp. tritici 3 group was first reported from Iran in this study. Mating type distribution among Phaeosphaeria species was determined. Both mating types were present in all sampling regions from Iran. We observed skewed distribution of mating types in one region (Kohgiluyeh va Boyer-Ahmad) and equal distribution in the other region (Bushehr). However, when considering our entire dataset of 273 Iranian Phaeosphaeria isolates, the ratio of mating types was not deviated significantly from 1:1 suggesting possibilities for isolates of opposite mating type to interact and reproduce sexually, although the sexual cycle may infrequently occur in some regions especially when the climatic conditions are unfavorable for teleomorph development.

• Journal of Forest and Environmental Science
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• v.24 no.1
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• pp.27-34
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• 2008

Level and distribution of genetic diversity in seven populations of Albizia lucida Benth. in eastern region of the Indian sub-continent were estimated using ISSR markers. Relatively higher level of genetic diversity within populations was observed in seven populations of A. lucida (mean of 0.38). From the result of AMOVA, majority of genetic diversity was allocated within populations (96.2%) resulting in a moderate degree of population differentiation. The observed distribution pattern of I-SSR variant among the populations was coincided with the typical pattern of long-lived woody tree species. Genetic relationships among the populations, reconstructed by UPGMA method, revealed two genetic groups. The population of Anugul and Bargarh turned out to be the most closely related despite a distance location between them. These formations will be of great value in the development of conservation plans for species exhibiting high levels of genetic differentiation due to fragmentation, such as indication of conservation unit size, which populations should be chosen as priority in conservation plans and which samples should be introduced in areas with a low number of individuals of A. lucida.

• Proceedings of the Korean Society for Bio-Environment Control Conference
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• 1996.05a
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• pp.41-62
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• 1996

Since 1966 tissue culture has been used as a tool for the production of disease indexed stocks from selected plants and their rapid (clonal) mass propagation through the procedure now referred to as micropropagation. The major advantages have been the rapid introduction of new plant cultivars, created within conventional and mutation breeding programmes, as healthy stock for beneficial distribution and the expansion of the world wide horticultural industry. (omitted)

• Journal of Environmental Science International
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• v.30 no.1
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• pp.29-43
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• 2021

This study analyzed the status of climate-change indicator plants native to the main islands of the Korean peninsula, while elucidating their distribution characteristics. Information on flora from over 129 island locations, comprising more than 100 species of native plants, was collected, compiled into a database, and utilized as raw data. The distribution of 193 climate-change indicator plants was confirmed. The distribution area of broadleaf evergreen trees and ferns, including Mallotus japonicus and Cyrtomium falcatum, was relatively wide. In contrast, the distribution of common northern plants such as Corydalis turtschaninovii and Malus baccata was limited. If global warming persists, northern plant distribution is expected to decrease rapidly in the Korean Peninsula island region, while the northern limit line of the southern plants is expected to migrate further northward. During this process, it is likely that the plant congregation structure and species diversity within the island region will change dynamically. In this study, comparative analyses between species and regions were conducted by assessing the relative frequency of their occurrence, and six types of botanical geographic distribution patterns were noted.

• Korean Journal of Plant Resources
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• v.28 no.4
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• pp.400-410
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• 2015

Juniperus chinensis (Cupressaceae) is a valuable woody plant resource, but this rare plant is only distributed in restricted regions in Korea. In this study, we surveyed the geographic distribution regions, variation of sex ratio and the dynamics of natural populations of J. chinensis. in order to establish conservation strategies for the sustainable conservation of this important resource tree. The 17 natural populations of J. chinensis are restrictively distributed in the shore cliffs of (1) Ulleungdo island, (2) Gyeongju-si to Gangneung-si of the eastern coast, the riverside cliff along (3) Donggang-river of Jungsun-gun and Pyeongchang-gun and (4) branch of Nakdonggang-river in Uiseong-gun. The populations in Ulleungdo island showed continuous population distribution of over 200 individuals, but populations in other regions had discontinuous population distribution of under 200. The population of J. chinensis surveyed in Korea was estimated in ca. 3,200 individuals. The sex ratio (male/female) among populations of J. chinensis was diverse with variation from 0.46~1.67 range, but showed no significance. The sex ratio of the total individuals by species level was 0.74, and the percentage of female tree was significantly higher than the male. The results of dynamics analysis within population among regions showed that seedlings and saplings of J. chinensis in three regions surveyed were continuously regenerating. The distribution of DBH class showed a stable population structure of inverse J shape graph, but fragmentation and decrease in populations because of invading broad-leaved shrubs and trees from the surroundings were concerned. Further studies, and in situ and ex situ conservation strategies for the sustainable conservation on natural populations of this rare resources woody plant, J. chinensis in Korea are recommended.

• Journal of Ecology and Environment
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• v.47 no.3
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• pp.75-84
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• 2023

Background: Knowledge of the spatial trends of plant invasions in different habitats is essential for a better understanding of the process of these invasions. We examined the variation in invasive alien plant species (IAS) richness and composition at two spatial scales defined by elevation and habitat types (roadside, forest, and cultivated lands) in the Makawanpur district of Nepal. Following an elevation gradient ranging from 500 to 2,400 m asl along a mountain road, plant species cover was recorded within sample plots of size 10 m × 5 m. Systematic random sampling was adopted in every 100 m elevation intervals on three habitat types. Results: Altogether 18 invasive alien plants belonging to eight families were recorded within 60 plots, of which 14 species (representing 80%) were from tropical North and South America. The most common plants by their frequency were Ageratina adenophora, Chromolaena odorata, Bidens pilosa, Lantana camara, and Parthenium hysterophorus. We found a significant relationship between species composition and elevation in the study area. Low-elevation regions had a higher number of alien species as compared to high-elevation regions within different habitat types. Conclusions: The species richness and density of IAS were higher in the road site followed by the cultivated land and forest sites. This pattern occurred throughout the elevation range and habitats. IAS were found mostly in the open land with high sunlight availability. Information from such scientific assessment of invasive alien plants will assist in developing appropriate management plans in the Makawanpur district.