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Bacterial Logic Devices Reveal Unexpected Behavior of Frameshift Suppressor tRNAs

  • Sawyer, Eric M.;Barta, Cody;Clemente, Romina;Conn, Michel;Davis, Clif;Doyle, Catherine;Gearing, Mary;Ho-Shing, Olivia;Mooney, Alyndria;Morton, Jerrad;Punjabi, Shamita;Schnoor, Ashley;Sun, Siya;Suresh, Shashank;Szczepanik, Bryce;Taylor, D. Leland;Temmink, Annie;Vernon, William;Campbell, A. Malcolm;Heyer, Laurie J.;Poet, Jeffrey L.;Eckdahl, Todd T.
    • Interdisciplinary Bio Central
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    • v.4 no.3
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    • pp.10.1-10.12
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    • 2012
  • Introduction: We investigated frameshift suppressor tRNAs previously reported to use five-base anticodon-codon interactions in order to provide a collection of frameshift suppressor tRNAs to the synthetic biology community and to develop modular frameshift suppressor logic devices for use in synthetic biology applications. Results and Discussion: We adapted eleven previously described frameshift suppressor tRNAs to the BioBrick cloning format, and built three genetic logic circuits to detect frameshift suppression. The three circuits employed three different mechanisms: direct frameshift suppression of reporter gene mutations, frameshift suppression leading to positive feedback via quorum sensing, and enzymatic amplification of frameshift suppression signals. In the course of testing frameshift suppressor logic, we uncovered unexpected behavior in the frameshift suppressor tRNAs. The results led us to posit a four-base binding hypothesis for the frameshift suppressor tRNA interactions with mRNA as an alternative to the published five-base binding model. Conclusion and Prospects: The published five-base anticodon/codon rule explained only 17 of the 58 frameshift suppression experiments we conducted. Our deduced four-base binding rule successfully explained 56 out of our 58 frameshift suppression results. In the process of applying biological knowledge about frameshift suppressor tRNAs to the engineering application of frameshift suppressor logic, we discovered new biological knowledge. This knowledge leads to a redesign of the original engineering application and encourages new ones. Our study reinforces the concept that synthetic biology is often a winding path from science to engineering and back again; scientific investigations spark engineering applications, the implementation of which suggests new scientific investigations.

Analysis of Thermal Shock Behavior of Cladding with SiCf/SiC Composite Protective Films (SiCf/SiC 복합체 보호막 금속피복관의 열충격 거동 분석)

  • Lee, Dong-Hee;Kim, Weon-Ju;Park, Ji-Yeon;Kim, Dae-Jong;Lee, Hyeon-Geon;Park, Kwang-Heon
    • Composites Research
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    • v.29 no.1
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    • pp.40-44
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    • 2016
  • Nuclear fuel cladding used in a nuclear power plant must possess superior oxidation resistance in the coolant atmosphere of high temperature/high pressure. However, as was the case for the critical LOCA (loss-of-coolant accident) accident that took place in the Fukushima disaster, there is a risk of hydrogen explosion when the nuclear fuel cladding and steam reacts dramatically to cause a rapid high-temperature oxidation accompanied by generation of a huge amount of hydrogen. Hence, an active search is ongoing for an alternative material to be used for manufacturing of nuclear fuel cladding. Studies are currently aimed at improving the safety of this cladding. In particular, ceramic-based nuclear fuel cladding, such as SiC, is receiving much attention due to the excellent radiation resistance, high strength, chemical durability against oxidation and corrosion, and excellent thermal conduction of ceramics. In the present study, cladding with $SiC_f/SiC$ protective films was fabricated using a process that forms a matrix phase by polymer impregnation of polycarbosilane (PCS) after filament-winding the SiC fiber onto an existing Zry-4 cladding tube. It is analyzed the oxidation and microstructure of the metal cladding with $SiC_f/SiC$ composite protective films using a drop tube furnace for thermal shock test.

Study of Pro-environmental Development for Golf Course in Korea (한국 골프장의 친환경적 개발에 관한 연구)

  • 김광두
    • Asian Journal of Turfgrass Science
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    • v.12 no.1
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    • pp.49-78
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    • 1998
  • Nowadays, there are increasing demands of golf courses and it is necessary to make more golf courses than the present. To do this, we need to improve the environmental problems with the regional inhabitants, and it is said that the first thing to be considered in developing any golf course in Korea is to preserve the environment. In this context, the purpose of this study is to set forth several design factors to lessen the negative impacts which are accompanied with the development of golf courses. 1. The present conditions of golf courses in Korea Many new golf courses have come into being, particularly since the late 1980s, and now, in the year of 1997, over one hundred of golf courses are doing their business, yet the number of golf course is still less than required. So far, over a half of them have been made in the vicinity of Seoul on account of various reasons, and this has adversely affected on our natural environment. This unreasonable development of golf courses has caused serious water pollution, landslides and the other problems. Also, the topography of Korea is not good for golf courses. Although the demands of golf courses are increasing, the suitable sites for them are very limited, and therefore it is sometimes unavoidable to make golf courses on steep hills. Consequently, in designing golf courses in Korea, the most important thing is the balance between natural environment and artificial environment. 2.Eco-friendly golf course design factors 1) The concept of eco-friendly golf courses Ecologically sustainable and sound golf courses which are made by eco-friendly approaches 2)Basic conditions of eco-friendly golf courses (1)The most suitable sites (2) Conservation of existing ground as much as possible (3)Proper use of agricultural chemicals which have great impacts on the environment (4) Reasonable use of fertilizers (5) Developing a specialized fertilizer only for grass (6) Adaptation of organic agriculture (7) Improvement of grass sorts (8) Establishing reservoirs for purifying the water from golf courses 3) Eco-friendly golf courses (1) Location-Enough area /Gentle slope/Winding ground/Including lakes or streams /Not crossing wind's main direction Facing south or southeast /Suitable soIl for grass /Good drainage /Low level of underground water (2)Course layout and design -Consideration about existing contours as much as possible -Adaptation of Scotish design trend -Various holes' configuration -Consideration toward surrounding landscapes -Reducing grass areas -Giving buffer zones -Adapting computer methods in the process of site analysis and design (3) Eco-friendly considerations in constructing and managing golf courses -Protection of wildlife -Reuse of existing forests and preservation of topsoil -Renovation of old-fashioned courses -Reducing grass areas -Purification of water -Standization of management -Strict regulations against chemicals -Recycling organic materials -Through separation of the water inside golf courses and out of bounds -Getting proper construction works done in a due time 4.Eco-friendly considerations from a viewpoint of cultural environment 1) Well-matched landscape design and events planning 2) Implement of identifications and awarding systerns 3)Acknowledgement of superintendents' qualitications in the maintenance of golf courses 4)Increasing public golf courses and keeping good relationships with the neighbors near golf courses Key words: Pro-environmental development, Golf course.

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Channel characteristics of multi-path power line using a contactless inductive coupling unit (비접촉식 유도성 결합기를 이용한 다중경로 전력선 채널 특성)

  • Kim, Hyun-Sik;Sohn, Kyung-Rak
    • Journal of Advanced Marine Engineering and Technology
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    • v.40 no.9
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    • pp.799-804
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    • 2016
  • Broadband powerline communication (BPLC) uses distribution lines as a medium for achieving effective bidirectional data communication along with electric current flow. As the material characteristics of power lines are not good at the communication channel, the development of power line communication (PLC) systems for internet, voice, and data services requires measurement-based models of the transfer characteristics of the network suitable for performance analysis by simulation. In this paper, an analytic model describing a complex transfer function is presented to obtain the attenuation and path parameters for a multipath power line model. The calculated results demonstrated frequency-selective fading in multipath channels and signal attenuation with frequency, and were in good agreement with the experimental results. Inductive coupling units are used as couplers for coupling the signal to the power line to avoid physical connections to the distribution line. The inductance of the ferrite core, which depends on the frequency, determines the cut-off frequency of the inductive coupler. Coupling loss can be minimized by increasing the number of windings around the coupler. Coupling efficiency was improved by more than 6 dB with three windings compared to the results obtained with one winding.

Thermal Analysis of Vegetable Insulation Oil for Hermetically Sealed Wind Turbine Transformer (풍력발전기용 밀폐형 변압기의 식물성 절연유에 대한 열적특성 연구)

  • Lee, Sung-Won;Lee, Joon-Yeob;Kim, Jun-Su;Woo, Jae-Hi;Kim, Dong-Hae
    • Transactions of the Korean Society of Mechanical Engineers B
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    • v.36 no.1
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    • pp.97-102
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    • 2012
  • A hermetically sealed oil transformer is designed by applying expanding function of the tank due to the volume changes of the insulation oil according to the temperature rises. When the insulation oil expands, an increase in the volume of the corrugated fin prevents a pressure rise of the transformer. For a wind turbine transformer, a vegetable-oil-immersed transformer has the advantages of excellent biodegradation and fire-resistant properties like an exceptionally high fire point. When vegetable oil is substituted for mineral oil, however, the maximum winding temperature rises because of the decrease in the internal circulation flow rate resulting from the variations of the oil's physical characteristics, such as density and viscosity. The purpose of this study is to develop a hermetically sealed vegetable oil transformer that can be applied in a wind turbine and to analyze the thermal stability of the active part of the transformer to deal with pressure variations due to the temperature changes. In addition, thermal tests for the vegetable oil transformer have been performed, and the measured values are compared with the analysis results.

T800/AD6005계 복합재의 습기투과에 관한 연구

  • 박명규;류백능;최영보
    • Proceedings of the Korean Society of Propulsion Engineers Conference
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    • 1997.11a
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    • pp.35-36
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    • 1997
  • 복합재는 강도가 높고 가볍기 때문에 최근 로켓의 연소관으로 널리 사용되고 있다. 그런데 이 복합재 로켓 연소관은 제조 후 대기 환경에 장기적으로 노출되어 있기 때문에 금속 연소관과는 달리 온도 또는 습도 등의 환경에 대한 영향을 고려해야 한다. 더구나 연소관은 내부에 추진제가 충전되어 있으므로 추진제의 기계적 특성이 습도에 민감함을 생각할 때 강도뿐만 아니라 습기의 투과도 또한 매우 중요한 고려 요소가 된다. 그러나 온/습도 변화에 따른 복합재 자체의 재료 특성 변화에 대한 연구는 많이 보고되었으나 습기의 투과 정도에 관한 연구는 자료가 미흡한 실정이다. 한편, 포화 함수율은 복합재에 따라서 차이가 있으나 T300/5208의 경우 문헌을 참조하면 20-$50^{\circ}C$에서 복합재 무게의 약 1.5% 정도이며 포화에 걸리는 시간은 약 100일 정도로 나타나 있다.본 연구에서는 수분이 복합재를 통하여 투과되는 정도를 고찰하기 위하여 $20^{\circ}C$,95%RH의 온/습도를 유지하는 수조를 제작하였고, 이 수조내에 보관한 복합재 연소관의 실린더 벽면으로 투과되는 습기를 측정하기 위하여 연소관 내에 습도 센서를 투입하여 상대습도를 직접 측정하였다. 복합재 연소관이 로켓에 사용될 때는 연소관 외부에 페인트로 피막 처리하고 연소관 내부에도 추진제와의 사이에 라이너가 접착되어 있어서 수분 침투 및 온도 등의 외부 환경조건에 견디기에 더 양호한 조건이나 본 연구에서는 복합재 자체의 특성을 고찰하기 위하여 섬유를 에폭시에 함침시켜 winding한 상태 그대로의 복합재 연소관 시료를 사용하였다. 습기의 투과는 내부에 라이너/인슐레이션이 피복되거나 또는 추진제가 충전된 경우 많은 감소효과를 보였다. 순수 복합재 연소관의 경우 수조에 넣고 평형에 도달한 후로부터 약 8개월의 습기 투과 상태를 볼대 벽면을 통하여 들어가는 water vapor flux는 $20^{\circ}C$,95%RH 에서 평균적으로 9.3163$\times$$10^{-8}$g/$m^2$sec로 나타났다. 이때 습기가 투과되는 연소관이 국지점을 평판으로 가정하고 Fick's law를 이용하여 구한 습기에 대한 복합재의 확산계수는 D=2.5$\times$$10^{-6}$$mm^2$sec였으며, 이는 다른 graphite/epixy 복합재의 확산계수와 유사한 값을 나타내고 있다. 또한 추진제가 충전된 연소관을 절단하여 밀폐한 후 95%RH 습도 조건에 보관함으로써 연소관 내부의 추진제 기계적 특성에 미치는 침투된 습기의 영향도 함께 고찰하였다. 추진제에 따라 차이는 있겠으나 추진제가 충전된 연소관은 순수 복합재 연소관에 비해 습기의 투과 정도가 작으며, 본 연소관에 충전된 RDX/AP계 추진제의 경우 추진제의 습기투과에 의한 추진제 물성 변화는 미미한 것으로 나타났다.

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A Study on the Utilization and Control Method of Hybrid Switching Tap Based Automatic Voltage Regulator on Smart Grid (스마트그리드의 탭 전환 자동 전압 조정기의 다중 스위칭 제어 방법 및 활용 방안에 관한 연구)

  • Park, Gwang-Yun;Kim, Jung-Ryul;Kim, Byung-Gi
    • Journal of the Korea Society of Computer and Information
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    • v.17 no.12
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    • pp.31-39
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    • 2012
  • In this paper, we propose a microprocessor-based automatic voltage regulator(AVR) to reduce consumers' electric energy consumption and to help controlling peak demanding power. Hybrid Switching Automatic Voltage Regulator (HS-AVR) consist of a toroidal core, several tap control switches, display and command control parts. The coil forms an autotransformer which has a serial main winding and four parallel auxiliary windings. It controls the output voltage by changing the combination of the coils and the switches. Relays are adopted as the link switches of the coils to minimize the loss. To make connecting and disconnecting time accurate, relays of the circuit have parallel TRIACs. A software phase locked loop(PLL) has been used to synchronize the timings of the switches to the voltage waveform. The software PLL informs the input voltage zero-crossing and positive/negative peak timing. The traditional voltage transformers and AVRs have a disadvantage of having a large mandatory capacity to accommodate maximum inrush current to avoid the switch contact damage. But we propose a suitable AVR for every purpose in smart grid with reduced size and increased efficiency.

The Influence of Landscape Paintings in Joseon Dynasty on the Styles of Landscape Garden (조선시대 산수화의 경관관이 원림양식에 미친 영향)

  • Kim, Han-Bai
    • Journal of the Korean Institute of Landscape Architecture
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    • v.40 no.2
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    • pp.49-63
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    • 2012
  • The popular landscape paintings in Jaseon Dynasty had become the prototypes of the paradise of people and played the essential role in making the typical types of garden in those times. The representative types of the paintings include , , and etc. They made ways to produce the typical types of Joseon landscape gardens such as 'Dowon Type Gardens', 'Gugok Type Gardens', 'Prospect Type Gardens' and 'Gilji Type Gardens' etc. The types of garden above showed their landscape characteristics corresponding with the types of painting respectively. The 'Dowon Type Gardens' mostly located at the mountain valley showed enclosed landscape suited for refuge it corresponds with the composition of . The 'Gugok Type Gardens' mostly located at the long and winding valley composed of sequential sceneries with open and enclosed views corresponding with the composition of . The 'Prospect Type Gardens' located mostly m the hilly sites holds open views contrasting with the earlier types, and activated with the influence of . The 'Gilji Type Gardens' influenced by extended their territory beyond the main garden and made the vicinity areas, including the whole village, a paradise in respect with feng shui. Most of the garden types in Joseon Dynasty have alternated the bipolar characteristics of Prospect and Refuge in time and area respectively.

A Study on 3[kW] PMA-RSG Optimal Design for Mobile Power Supply (이동형 전원장치용 3[kW] PMA-RSG의 최적 설계에 대한 연구)

  • Baik, Jei-Hoon;Toliyat, Hamid A.;Kim, Nam-Hun
    • Journal of the Korean Institute of Illuminating and Electrical Installation Engineers
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    • v.23 no.6
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    • pp.109-117
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    • 2009
  • In this paper, an analytical model using equivalent magnetic circuits for the PMA-SynRG is presented. The lumped parameter model (LPM) is developed from machine geometry, stator winding and machine operating specifications. By the LPM, magnetic saturation of rotor bridges is incorporated into model and it provides effective means of predicting machine performance for a given machine geometry. The LPM is not as accurate as finite element analysis but the equivalent magnetic circuits provide fast means of analyzing electromagnetic characteristics of PMa-SynRG. It is the main advantage to find the initial design and optimum design. The initial design of PMa_RSG is performed by LPM model and FEM analysis, and the final PMA-RSG design is optimized and identified by FEM analysis considering actual machine design. The linear LPM and the nonlinear LPM are programmed using MATLAB and all of machine parameters are calculated very quickly. To verify justification of the proposed design of PMa-RSM, back-EMF is measured.

THE EFFECT OF NiTi ROTARY INSTRUMENTATION ON THE CHANGE OF APICAL ROOT CANAL CURVATURE (NiTi Rotary Instrumentation이 근관만곡도 변화에 미치는 영향)

  • Lim, Hyoung-Tae;Hong, Chan-Ui;Cho, Yong-Bum
    • Restorative Dentistry and Endodontics
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    • v.23 no.1
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    • pp.257-268
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    • 1998
  • During cleaning and shaping of narrow and curved canals, it is very difficult or nearly impossible to maintain the original canal shape. Procedural accidents such as, ledge, zipping, perforation, and instrument breakage are frequently occurred and even may lead to failure of endodontic therapy. To prevent these kinds of accidents, various instrumentation techniques and materials have been introduced. Recently some nickel titanium (NiTi) files are introduced and it is reported that These NiTi files created rounder preparations with less transportation than conventional instruments in curved canals. This study compared the change of the canal curvature and procedural accidents after instrumentation produced by stainless steel K-flexo file, and NiTi rotary files (Profile 29 and Quantec 2000). Thirty narrow and curved canals (25-45 degree) of extracted human molars were randomly divided into three groups. In group 1, canals were instrumented using a step-back and watch-winding/pull motion with K-flexo files. In group 2, canals were prepared with Profile 29. Group 3, canals were prepared with Quantec 2000 files. Before and after preparation of canals, periapical radiographs were taken and scanned. The change of canal curvature were measured using Photoshop 4.0 program and the incidence of procedural accidents were also evaluated. The results were as follows: 1. All group showed some loss of canal curvature after instrumentation. 2. Average loss of canal curvature was $6.70{\pm}5.31$ degree for group 1, $3.80{\pm}2.57$ degree for group 2, and $5.40{\pm}4.83$ degree for group 3. All group There was significant change in curvature between before and after instrumentation (p<0.05). But there was no statistical difference amoung 3 groups. 3. In group I, there were no procedural accidents, such as ledging, perforation, or instrument fracture. In group 2, two cases of ledge and one case of instrument fracture were produced Goup 3, each one case of ledge, perforation and instrument fracture were occurred. Whthin the limits of above results, It seems that NiTi rotary instrumentation is not All Mighty and if we use uncarefully, it is more dangerous to produce some procedural accidents than conventional hand files. But more studies should be taken to evaluate the exact effects of NiTi rotary instrumentations.

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