• Title/Summary/Keyword: universal probe

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Development of Clamping Probe for Rare DNA Detection using Universal Primers

  • Kim, Meyong Il;Lee, Ki-Young;Cho, Sang-Man
    • Fisheries and Aquatic Sciences
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    • v.17 no.3
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    • pp.339-344
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    • 2014
  • PCR amplification with universal primer is a useful tool for speciation of symbionts in marine eukaryote coupled with robust separation method such as denaturing high performance chromatography (DHPLC). To overcome the biased amplification, clamping PCR is recommended to suppress the amplification of host gene. In this study, we evaluated the efficiency of rare gene detection for two kinds of clamping probes which were successfully utilized for eukaryotic symbiont analysis: C3 linked nucleotide (C3) and peptide nucleic acid (PNA). PNA was 3-4 orders of magnitude higher than that of C3 tested in clamping efficiency and rare gene detection. This represented that PNA could be a more competent clamping probe for the enhancement of PCR amplification for rare symbiont genes.

Specific Detection of Erwinia carotovora subsp. carotovora by DNA Probe Selected from PCR Polymorphic Bands (PCR다형성 밴드 유래 DNA probe에 의한 Erwinia carotovora subsp. carotovora 특이적 검출)

  • Kang, Hee-Wan;Go, Seung-Joo;Kwon, Soon-Wo
    • Korean Journal Plant Pathology
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    • v.14 no.2
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    • pp.164-170
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    • 1998
  • This study was carried out to develop DNA probe for specific detection of Erwinia carotovora subsp. carotovora. Universal rice primer (URP, 20 mer) developed from repetitive sequence of rice was applied for producing PCR DNA fingerprints of Erwinis spp. In E. carotovora subsp. carotovora strains, primer URP2F amplyfied polymorphic bands which are distinguisable from other Erwinia spp. A PCR band of 0.6 kb selected from PCr polymorphic bands of E. carotovora subsp. carotovora strains was cloned and evaluated as a diagnostic DNA probe. Among 28 bacterial strains including 22 Erwinia spp, the probe (pECC2F) only hybridized to total DNAs from e. carotovora subsp. carotovora strains and E. carotovora subsp. wasabiae, but sizes of hybridized bands were different between these subspecies, 10.0 kb and 3.5 kb respectively. In dot blot assays using probe pECC2F, as few as 103 colony forming units (CFU) of E. carotovora subsp. carotovora could be detected in a suspension containing about 1$\times$103 CFU of soil bacteria.

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Detectability evaluation of the loose parts in steam generator by eddy current testing techniques

  • Kim, Kyungcho;Min, Kyongmahn;Kim, Changkuen;Kim, Jin-Gyum;Jhung, Myungjo
    • Nuclear Engineering and Technology
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    • v.50 no.7
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    • pp.1160-1167
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    • 2018
  • Detectability of the loose parts (LPs) in steam generator (SG) was studied with eddy current testing technique such as X-probe, bobbin and rotating coils ($MRPC^{(R)}$) as a function of LP size and spacing between LP and tube or between LP and support structures. SG mockup simulating SG tube and support structures with LP was fabricated. The X-probe showed slightly better detectability than $MRPC^{(R)}$ for LP of ferrous (F-LP) material and vice versa for LP of nonferrous (NF-LP) material. In terms of feasibility, inspection rate and other predictable features of the SG tubing inspections, X-probe can be used reliably for monitoring the LPs and the flaws formed by LPs on SG tubes.

TaqMan Probe Real-Time PCR for Quantitative Detection of Mycoplasma during Manufacture of Biologics (생물의약품 제조공정에서 마이코플라스마 정량 검출을 위한 TaqMan Probe Real-Time PCR)

  • Lee, Jae Il;Kim, In Seop
    • KSBB Journal
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    • v.29 no.5
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    • pp.361-371
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    • 2014
  • Mycoplasma is well recognized as one of the most prevalent and serious microbial contaminants of biologic manufacturing processes. Conventional methods for mycoplasma testing, direct culture method and indirect indicator cell culture method, are lengthy, costly and less sensitive to noncultivable species. In this report, we describe a new TaqMan probe-based real-time PCR method for rapid and quantitative detection of mycoplasma contamination during manufacture of biologics. Universal mycoplasma primers were used for mycoplasma PCR and mycoplasma DNA was quantified by use of a specific TaqMan probe. Specificity, sensitivity, and robustness of the real-time PCR method was validated according to the European Pharmacopoeia. The validation results met required criteria to justify its use as a replacement for the culture method. The established real-time PCR assay was successfully applied to the detection of mycoplasma from human keratinocyte and mesenchymal stem cell as well as Vero cell lines artificially infected with mycoplasma. The overall results indicated that this rapid, specific, sensitive, and robust assay can be reliably used for quantitative detection of mycoplasma contamination during manufacture of biologics.

Development of Visual Inspection System for Minte needle probe (미세 탐침의 검사 시스템 개발)

  • Kang, Su-Min;Park, Se-Hyuk;Huh, Kyung-Moo
    • Proceedings of the KIEE Conference
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    • 2008.04a
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    • pp.123-124
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    • 2008
  • The appearance inspection of various electronic products and parts has been executed by the eyesight of human. But inspection by eyesight can't bring about uniform inspection result. Because the appearance inspection result by eyesight of human is changed by condition of physical and spirit of the checker. So machine vision inspection system is currently used to many appearance inspection fields instead of the checker. Therefore we proposes a inspection system in this paper. it will be able to secure the objectivity of the prosecuting attorney using inspection system. Also this system has been developed only using PC, CCD Camera and Visual C++ for universal workplace.

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Dynamics of All-Optical Switching in Bacteriorhodopsin and its Application to Optical Computing

  • Singh, C.P.;Roy, Sukhdev
    • Journal of Photoscience
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    • v.9 no.2
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    • pp.317-319
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    • 2002
  • All-optical switching has been demonstrated in bacteriorhodopsin (bR) based on nonlinear intensity induced excited state absorption. The transmission of a cw probe laser beam at 410 nm corresponding to the peak absorption of M state through a bR film is switched by a pulsed pump laser beam at 570 nm that corresponds to the maximum initial 8 state absorption. The switching characteristics have been analyzed using the rate equation approach considering all the six intermediate states (B, K, L, M, N and 0) in the bR photocycle. The switching characteristics are shown to be sensitive to life time of the M state, absorption cross-section of the 8 state at probe wavelength ($\sigma$ $\_$Bp/) and peak pump intensity. It has been shown that the probe laser beam can be completely switched off (100 % modulation) by the pump laser beam at relatively low pump powers, for $\sigma$$\_$Bp/ = O. The switching characteristics have been used to design all-optical NOT, OR, AND and the universal NOR and NAND logic gates for optical computing with two pulsed pump laser beams.

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Development of Genus- and Species-Specific Probe Design System for Pathogen Detection Based on 23S rDNA

  • Park Jun-Hyung;Park Hee-Kyung;Kang Byeong-Chul;Song Eun-Sil;Jang Hyun-Jung;Kim Cheol-Min
    • Journal of Microbiology and Biotechnology
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    • v.16 no.5
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    • pp.740-747
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    • 2006
  • Amplification by universal consensus sequences in pathogenic bacterial DNA would allow rapid identification of pathogenic bacteria, and amplification of genus-specific and species-specific sequences of pathogenic bacterial DNA might be used for genotyping at the genus and species levels. For design of probes for molecular diagnostics, several tools are available as stand-alone programs or as Web application. However, since most programs can design only a few probe sets at one time, they are not suitable for large-scale and automatic probes design. Therefore, for high-throughput design of specific probes in diagnostic array development, an automated design tool is necessary. Thus, we developed a Web-based automatic system for design of genus-specific and species-specific probes for pathogen detection. The system is available at http://www.miprobe.com.

Touch-Trigger Probe Error Compensation in a Machining Center (공작기계용 접촉식 측정 프로브의 프로빙 오차 보상에 관한 연구)

  • Lee, Chan-Ho;Lee, Eung-Suk
    • Transactions of the Korean Society of Mechanical Engineers A
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    • v.35 no.6
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    • pp.661-667
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    • 2011
  • Kinematic contact trigger probes are widely used for feature inspection and measurement on coordinate measurement machines (CMMs) and computer numerically controlled (CNC) machine tools. Recently, the probing accuracy has become one of the most important factors in the improvement of product quality, as the accuracy of such machining centers and measuring machines is increasing. Although high-accuracy probes using strain gauge can achieve this requirement, in this paper we study the universal economic kinematic contact probe to prove its probing mechanism and errors, and to try to make the best use of its performance. Stylus-ball-radius and center-alignment errors are proved, and the probing error mechanism on the 3D measuring coordinate is analyzed using numerical expressions. Macro algorithms are developed for the compensation of these errors, and actual tests and verifications are performed with a kinematic contact trigger probe and reference sphere on a CNC machine tool.

Fabrication of Fabric-based Wearable Devices with High Adhesion Properties using Electroplating Process (전해 도금을 이용한 높은 접착 특성을 갖는 섬유 기반 웨어러블 디바이스 제작)

  • Kim, Hyung Gu;Rho, Ho Kyun;Cha, Anna;Lee, Min Jung;Park, Jun-beom;Jeong, Tak;Ha, Jun-Seok
    • Journal of the Microelectronics and Packaging Society
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    • v.28 no.1
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    • pp.55-60
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    • 2021
  • In order to produce wearable displays with high adhesion while maintaining flexible characteristics, the adhesive method using electro plating method was carried out. Laser lift-off (LLO) transcription was also used to remove sapphire substrates from LEDs bonded to fibers. Afterwards, the SEM and EDS data of the sample, which conducted the adhesion method using electro plating, confirmed that copper actually grows through the lattice of the fiber fabric to secure the light source and fiber. The adhesion characteristics of copper were checked using Universal testing machine (UTM). After plating adhesion, the characteristics of the LLO transcription process completed and the LED without the transcription process were compared using probe station. The electroluminescence (EL) according to the enhanced current was measured to check the characteristics of the light source after the process. As the current increases, the temperature rises and the bandgap decreases, so it was confirmed that the spectrum shifted. In addition, the change in the electrical characteristics of the samples according to the radius change is confirmed using probe station. The radius strain also had mechanical strength that copper could withstand bending stress, so the Vf variation was measured below 6%. Based on these results, it is expected that it will be applied to batteries, catalysts, and solar cells that require flexibility as well as wearable displays, contributing to the development of wearable devices.

An Experimental Study of Mutual Relation between Wake and Boundary Layer of a Flat Plate; Mean Velocity Field (평판 경계층과 후류와의 상호관계에 관한 연구; 평균속도장)

  • Kim, Dong-Ha;Chang, Jo-Won
    • Journal of the Korean Society for Aeronautical & Space Sciences
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    • v.32 no.10
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    • pp.1-11
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    • 2004
  • An experimental study was carried out to investigate the influence of flow conditions of a boundary layer on the near-wake of a flat plate. Various attaching positions of tripping wires were selected to change flow conditions on a boundary layer. Laminar, transitional, and turbulent boundary layer conditions at 0.98C from the leading edge are imposed to investigate the evolution of symmetric and asymmetric wake. An x-type hot-wire probe(55P61) is employed to measure at 8 stations of the near-wake region. Measured mean velocity distributions are presented in terms of similarity parameter. It is found that the symmetric wake collapses well to the universal profile in the central part of the wake. However, the universal profile is not suitable in describing an asymmetric wake.