• Journal of Aquaculture
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• v.21 no.3
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• pp.139-145
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• 2008

Morphological classification of echinoid species has many difficulties because of their phenotypic variations. In the present study, we analyzed morphotypes and partial mitochondrial 12S rDNA sequences of four sea urchin species classified as Pseudocentrotus depressus, Anthocidaris crassispina, Hemicentrotus pulcherrimus and Strongylocentrotus nudus, and unidentified four species collected from the coasts of the East sea. Their genomic DNAs were extracted from gonads and mitochondrial 12S rDNA sequences were amplified by the polymerase chain reaction (PCR) method. The sequence identities among the known four sea urchin species were 87.4-95.6%. The sequence identities among the unidentified four species were 99.4-99.6% and showed the highest homology to S. intermedius(99.8%). Thus, our phylogenetic tree indicates that the unidentified four species belong to S. intermedius.

• Journal of Korean Society of Forest Science
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• v.111 no.2
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• pp.302-310
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• 2022

Here we aimed to classify the major coniferous tree species (Pinus densiflora, Pinus koraiensis, and Larix kaempferi) by tree measurement information and machine learning algorithms to establish an efficient forest management plan. We used national forest monitoring information amassed over nine years for the measurement information of trees, and random forest (RF), XGBoost (XGB), and light GBM (LGBM) as machine learning algorithms. We compared and evaluated the accuracy of the algorithm through performance evaluation using the accuracy, precision, recall, and F1 score of the algorithm. The RF algorithm had the highest performance evaluation score for all tree species, and highest scores for Pinus densiflora, with an accuracy of about 65%, a precision of about 72%, a recall of about 60%, and an F1 score of about 66%. The classification accuracy for the dominant trees was higher than about 80% in the crown classes, but that of the co-dominant trees, the intermediate trees, and the overtopper trees was evaluated as low. We consider that the results of this study can be used as reference data for decision-making in the selection of thinning trees for forest management.

• Journal of Life Science
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• v.17 no.6 s.86
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• pp.756-761
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• 2007

Cenus Malus is a long-lived woody species primarily distributed throughout Asia. Many species of this genus are regarded as agriculturally and ecologically important. The phynetics and genetic diversity among eight species of genus Malus were reconstructed using the random amplified polymorphic DNA (RAPD) markers. In a simple measure of intraspecies variability by the percentage of polymorphic bands, the M. micromalus exhibited the lowest variation (34.7%). The M. pumila showed the highest (50.0%). Mean number of alleles per locus (A) ranged from 1.347 to 1.500 with a mean of 1.437. The phenotypic frequency of each band was calculated and used in estimating genetic diversify (H) within species. The mean of H was 0.190 across species, varying from 0.155 to 0.220. In particular, two cultivated species, M. pumila and M. asiatica, had high expected diversity, 0.314 and 0.307, respectively. On a per locus basis, the proportion of total genetic variation due to differences among species ranged from 0.388 to 0.472 with a mean of 0.423, indicating that 42.3% of the total variation was found among species. The phylogenetic tree showed three distinct elates. One includes M. sieversii, M. pumila, and M. asiatica. Another includes three M. baccata taxa. The other includes M. sieboldii, M. floribunsa, and M. micromalus. One variety and one form of M. sieboldii were well separated each other. RAPD markers are useful in germ-plasm classification of genus Malus and evolutionary studies.

• Journal of Korean Society of Forest Science
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• v.108 no.3
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• pp.277-289
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• 2019

This study was designed to analyze vegetation units using a phytosociological method and to identify the ecological characteristics of each vegetation unit, for forest vegetation from Misiryeong to Danmokryeong of Baekdudaegan, in which, in total, 150 plots were surveyed during May to October 2016. Using community classification according to phytosociology, the Quercus mongolica community group was classified at the top level of a vegetation hierarchy that was classified into an Abies koreana community and a Carpinus cordata community. The A. koreana community was divided into Thuja koraiensis and A. koreana typical groups. The T. koraiensis group was subdivided into Pinus pumila and Betula chinensis subgroups. The C. cordata community was divided into Sasa borealis and C. cordata typical groups. Thus, this forest vegetation comprised one community group, two communities, four groups, and two subgroups and indicated five vegetation units. After analyzing the correlations among the five vegetation units classified by this plant sociological method and the environmental factors like altitude, bare rock, number of present species, and coverage of tree layer with a coincidence method, the A. koreana community and C. cordata typical group were found to be distributed above 1,000 m in altitude, and the S. borealis group was distributed below 1,000 m in altitude. Except for vegetation unit 1, vegetation units tended to be mainly distributed where there was less than 20% bare rock. There was no typical tendency in the number of species present; vegetation unit 5 showed the most abundance among the vegetation units. Coverage by the tree layer mostly exceeded 60%, except for vegetation unit 1.

• Korean Journal of Ecology and Environment
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• v.44 no.2
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• pp.195-202
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• 2011

This study analyzed and modeled the relationships between the probabilities of two exotic species occurrence (i.e. largemouth bass and blue gill) and environmental factors such as climatic and geographical variables using Generalized Additive Models (GAM), Generalized Liner Models and Classification Tree Analysis (CTA). The most moderate occurrence probability of largemouth bass was predicted using GAM with an area under the curve (ADC) of 0.88 and Kappa of 0.42, while those of blue gill was suggested by using CTA with an AUC of 0.92 and Kappa of 0.44. The most significant environmental variable in terms of changes in deviance for both species was the annual air temperature for the occurrence probability. Dams had stronger effect on the occurrence of largemouth bass than blue gill. Model development and prediction for the occurrence probability of fish species and richness are necessary to prevent further spread of exotic fishes such as largemouth bass and blue gill because they can threaten habitats of native river ecosystem through various mechanisms.

• Journal of Korean Society of Rural Planning
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• v.19 no.3
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• pp.107-116
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• 2013

In this study, it provides the diagnostic index for the rural landscape formation. For the development of diagnostic index, this study first analyzed documents and papers on the landscape formation. Landscape types are also classified by their function and then landscape index was developed by AHP method. Classification system was categorized as three steps: 2 items for 1st step, 10 items for 2nd step, and 20 items(criteria) for 3rd step. In the survey of weighting values with AHP method, the analysis result for the first step showed that rural village landscape is more important than landscape around the village by approximately 20%. In the second step, residence is rated as the most important, followed by village tree planting, and then farmland around the rural villages, greenery, and water environment. In the third step, the feng shui is rated as the most important, followed by tree planting, village forest, culture, and history. While vehicle maintenance, village alleys and pedestrian facilities are rated lower. In index of the around the village, weighting value for index of the farm land and skyline has the highest value. While species richness, water quality and water resources were rated relatively low. In the future, the rural landscapes diagnosis index will be applied to measure the level of the rural villages landscapes and it is expected to propose political support for the landscapes formation.

• Korean Journal of Environment and Ecology
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• v.28 no.2
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• pp.182-196
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• 2014

In this study, for the forest vegetation classification and the quantitative analysis of the Picea jezoensis and Abies hollophylla stand, the type classification of the vegetation structure was performed with Z-M phytosociological method, and as a result, it was classified into the Picea jenoensis community and the Abies holophylla community in the community unity. The Picea jezoensis community was subdivided into the Rosa koreana group and the Acer ukurunduense group in the group unity and the Abies holophylla community was subdivided into the Acer mandshuricum group and the Lindera obtusiloba group. In the results of estimating the importance value based on the classified vegetation unity, it was deemed that the dominance of the Picea jezoensis would be continued for a while as the importance value from the tree layers of vegetation unity 1 and 2 represented relatively high with 30.73% and 20.25%. In addition, in the results of analyzing the species diversity to estimate the maturity of the community, the species diversity index of the vegetation unity 4 was the lowest with 0.6976 and that of vegetation unity 2 was the highest with 1.1256. As in the similarity between the communities, the vegetation unit 1 and 4 and the vegetation unit 2 and 4 represented low with 0.2880 and 0.3626, respectively, and the similarity between the vegetation unit 1 and 2 and between 2 and 4 represented 0.5411 and 0.5041, respectively, it was deemed that they were the communities that the difference in the composition species between the communities was not big. In the results of analyzing the Chi-square matrix and the catalog of constellations for the interspecific, they were divided mainly into two types, and type 1 plant species were mostly differential species and the characteristic species, which appeared in the Picea jezoensis community classified phytosociologically, and type II plant species were mostly the species appearing in the Abies holophylla community growing in the relatively damp places. Such results is deemed that the positive (+) correlation is recognized among the species, of which growing environments are similar, and the negative (-) correlation .represents among the species, of which preferential environments are different.

• Journal of the Korean Institute of Landscape Architecture
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• v.19 no.3
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• pp.41-54
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• 1991

This study was executed to analyze the vegetational landscape structure and administration planning of Younguan Royal Tomb forest by the classification and DCA ordination were applied to the study are in order to classify them into several groups based on environmental variables. Also Younguan Royal Tomb forest comparison of a pair of photographs taken in 1920s and 1990. Sixteen sites were sampled with clumped sampling method in september 1990 and five quadrats were examined in each site. By classification and DCA, the plant community were divided into two groups(A. japonica community, P. densiflora, Quercus acutissima community) by the humus. Pinus densiflora community of actual vegetion covered 15.9%, Alnus japonica 6.5% and Quercus community 65.6% of the total area. And the afforested vegetation of P. koraiensis. P. rigida and Juglans mandshurica covered 13.2%. DCA ordination showed that successional trends of tree species seem to be from P. densiflora, Q. aliena to Q. acutissima in P. densiflora community and from A. japonica community of the upper layer. By the comparison of couple photographs between 1920s and 1990 we can recognize the change of historical landscape composed of P. densiflora community, A. japonaca and those community shall be conserved by the disclimax method, i.e. the broadleaf vegetation in the underlayer in the P. densiflora community should be cleared out. Otherwise the vegetational landscape sructure in Younguan Royal Tomb is successed to progress succession to Q. acutissima landscape.

• Journal of the Korean Society of Environmental Restoration Technology
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• v.11 no.2
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• pp.55-65
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• 2008

This study was surveyed to analyze vegetation structure of mountainous wetlands in Chung-ju city and around area from September to November, 2006. 6 sites of total 15 potential mountainous wetlands were discriminated throughout field survey. By classification system of mountainous wetlands presented in manual of forest wetlands research, types of wetlands were classified into slant and a flat. Many sites were covered with land plants as Pueraria thunbergiana and so on. To understand vegetation structure of mountainous wetlands, Height, DBH (diameter at breast height), DI (Dominance Index), Sociability and Constancy were surveyed and Based on this result, a projection chart was drawn. As results, Salix koreensis in tree layer and Persicaria thunbergii and Impatiens textori in herb layer were surveyed as broadly distributed species. This study is mainly focused on vegetation condition of mountainous wetlands. But, it will be needed studying on classification system of mountainous wetland type and functional assessment for conservation or management of wetlands.

• Korean Journal of Environment and Ecology
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• v.10 no.2
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• pp.283-296
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• 1997

To investigate the plant community structure in valley and suggest the management of Mational Park, fifty plots were set up and surveyed in Jujeongol Valley, Soraksan National Park. The classification by TWINSPAN and DCA ordination technique were applied to the study area in order to classify them into several groups based on woody plants. The dividing groups were Quercus mpnngolica - Q. variabilis - Pinus densiflora community, P. densiflora community, Carpinus laxiflora community, Q. serrata community. The ecological trends of tree species by DCA ordination technique and DBH class distribution analysis was like that Q. mongolica - Q. variabilis - P. densiflora community and P. densiflora community seems to be trended from P. densiflora community to Q. mongolica community. Q. serrata community seems to be trended from Q. serrata community to C. laxiflora community and C. laxiflora will be maintaimed stable state.