• Journal of the Korean Society of Fisheries and Ocean Technology
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• v.46 no.3
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• pp.239-247
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• 2010

Species of fish such as striped beakperch, bluefin searobin and konoshiro gizzard shad are commercially very important due to their high demand in the Korean market. When estimating acoustically the abundance of stocks for these species, it is of crucial importance to know the target strength (TS) to the length dependence. In relation to these needs, the TS experiments were conducted on three different species in an acrylic salt water tank using two split-beam echo sounders of 70 and 120 kHz. The TS for these three species under the controlled condition was simultaneously measured with the swimming movement by a DVR system and analyzed as a function of fish length (L) and frequency (or wavelength $\lambda$). The equation of the form TS=a log (L)+b log ($\lambda$)+c was derived for their TS-length dependence. The best fit regression of TS on fork length for striped beakperch was estimated as TS=35.67 log (L, m) -15.67 log ($\lambda$, m) -46.69 ($r^2$=0.78). Furthermore, the best fit regression of TS on fork length for konoshiro gizzard shad was shown to be TS=25.85 log (L, m) -5.85 log ($\lambda$, m) -32.22 ($r^2$=0.51). The averaged TS for 12 bluefin searobins with a mean length of 24.36cm at 70 kHz was analyzed to be -41.55dB. In addition, the averaged tilt angle obtained simultaneously by a DVR system with TS measurements for 27 konoshiro gizzard shads swimming within an acrylic salt water tank was estimated at $-2.7^{\circ}$.

• The Plant Pathology Journal
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• v.22 no.4
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• pp.386-390
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• 2006

Extensive research of the Potato virus X(PVX) has been performed in in vitro transcription system using the bacteriophage T7 promoter. We constructed an efficient T-DNA based binary vector, pSNU1, and modified vectors carrying PVX replicons. The suitability of the construct to transiently express PVX RNA using Agrobacterium tumefaciens was tested by analysis of infectivity in plants. The expressed PVX RNA was infectous and systemically spread in three plant species including Nicotiana benthamiana, N. tabacum cv. Xanthi-nc, and Capsicum annuum cv. Chilsungcho. The PVX full length construct, pSPVXp31, was caused severe mosaic symptoms on N. benthamiana, severe necrotic lesions on C. annuum while milder symptoms and delayed mosaic symptoms were appeared on the systemic leaves on N. tabaccum. RT-PCR analysis confirmed the presence of PVX RNAs on both inoculated and systemic leaves in all three plant species tested. Our results indicated that PVX replicons were efficiently expressed PVX RNA in at least three tested species. Further investigation win be needed to elucidate the mechanism of PVX replication, translation, movement and assembly/disassembly processes.

• The Plant Pathology Journal
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• v.34 no.1
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• pp.11-22
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• 2018

Type VI secretion system (T6SS) has been discovered in a variety of gram-negative bacteria as a versatile weapon to stimulate the killing of eukaryotic cells or prokaryotic competitors. Type VI secretion effectors (T6SEs) are well known as key virulence factors for important pathogenic bacteria. In many Burkholderia species, T6SS has evolved as the most complicated secretion pathway with distinguished types to translocate diverse T6SEs, suggesting their essential roles in this genus. Here we attempted to detect and characterize T6SSs and potential T6SEs in target genomes of plant-associated and environmental Burkholderia species based on computational analyses. In total, 66 potential functional T6SS clusters were found in 30 target Burkholderia bacterial genomes, of which 33% possess three or four clusters. The core proteins in each cluster were specified and phylogenetic trees of three components (i.e., TssC, TssD, TssL) were constructed to elucidate the relationship among the identified T6SS clusters. Next, we identified 322 potential T6SEs in the target genomes based on homology searches and explored the important domains conserved in effector candidates. In addition, using the screening approach based on the profile hidden Markov model (pHMM) of T6SEs that possess markers for type VI effectors (MIX motif) (MIX T6SEs), 57 revealed proteins that were not included in training datasets were recognized as novel MIX T6SE candidates from the Burkholderia species. This approach could be useful to identify potential T6SEs from other bacterial genomes.

• Journal of Plant Biology
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• v.37 no.1
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• pp.43-51
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• 1994

Spore morphology of 14 species of Ophioglossaceae is examined, and descriptions and key based on spore morphology are provided. In addition, spores of one species of Angiopteris and three species of Osmunda are examined for comparision with those of Ophioglossaceae. Spore shape at proximal face is sub triangular or triquete in Botrychium and circular in Ophiog~ lossum, Angiopteris and Osmunda. Based on the wall sculpturing patterns, three groups can be recognized within Botrychium, and the differences of wall sculpturing among these groups are smaller as compared to those among Botrychium, Ophioglossum, Osmunda and Angiopteris. This result supports the previous infrafamilial system of Clausen, which was mainly based on the characteristics of vernation, habit, fertile and sterile segments of the leaf, and gametophyte. Spores of nine species of Ophioglossum, which are circular in proximal face and fossulate or foveolate in wall sculpturing, are quite uniform as compared to those of Botrychium. Therefore they should be kept under a single genus rather than split into four genera suggested by Nishida (1952).(1952).

• Proceedings of the KSRS Conference
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• 2008.10a
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• pp.41-44
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• 2008

In this paper, major species of tree were discriminated in compartment by using LiDAR data and optic imagery. This is an important work in forest field. A current digital stock map has created the aerial photo and collecting survey data. Unlike high resolution imagery, LiDAR data is not influenced by topographic effects since it is an active sensory system. LiDAR system can measure three dimension information of individual tree. And the main methods of this study were to extract reliable the individual tree and analysis techniques to facilitate the used LiDAR data for calculating tree crown 2D parameter. We should estimate the forest inventory for calculating parameter. 2D parameter has need of area, perimeter, diameter, height, crown shape, etc. Eventually, major species of tree were determined the tree parameters, compared a digital stock map.

• Korean Journal of Fisheries and Aquatic Sciences
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• v.54 no.4
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• pp.517-525
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• 2021

Trawl fishing is a major concern worldwide, and there is considerable debate about its impact on marine ecosystems. In this study, we used the vessel monitoring system (VMS) data collected in the southwest Atlantic Ocean from 2016 to 2019 to estimate the fishing effort and trawled area. Spatial distribution of trawl activities according to the latitude and longitude and the hotspots where fishing was concentrated each year were identified. Trawling activities of the Korean vessels were mainly distributed between 40-52°S and 56-63°W. The species caught during the fishing period comprised five Cephalopoda, three Chondrichthyes, ten Osteichthyes, and other fish. The Argentine hake Merluccius hubbsi and Argentine shortfin squid Illex argentinus were the dominant species in the catch.

• Journal of Korean Society of Forest Science
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• v.97 no.2
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• pp.156-164
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• 2008

Recognizing the importance of the multi-purpose management of natural deciduous forest, this study was carried out to implement the partial cutting for stand regulation to examine agroforestry practice as well as other concurrent forest resource production, and to investigate the changes in stand characteristics and understory vegetation in a silvopasture practiced natural deciduous stand in the Research Forest of Kangwon National University, Korea. Three different partial cutting intensities (68.1%, 48.6%, and control) were performed in the unmanaged natural deciduous stand in order to improve the growing condition, especially light condition, for introducing some commercial herbaceous plants on the forest floor to establish agroforestry and/or silvopastoral system. Dominated by Quercus varibilis Blume (50.5%) and Quercus dentata Thum. ex Murray (42.6%), eight tree species were composed of the study forest, including poles of Pinus desiflora Siebold & Zucc and sapling of Pinus Koraiensis Siebold & Zucc. The total of 87 (13 tree species, 12 shrub species, 58 herbaceous species, and 4 woody climbers) vascular plant species were observed in study site after partial cutting treatments, while that of before partial cutting was 53 species (14 tree species, 8 shrubs species, 30 herbaceous species, and 1 woody climbers). The proportion of life form spectra in plot B was Mi (28.4%)-Na (23.0%)-Ge (17.5%)-Ch (10.8%)-He (9.5%)-MM (6.7%)-Th (4.1%). No statistically significant differences were observed in changes of life form spectra from before to after partial cutting treatment and among partial cutting gradients in this study. Partial cutting and scratching for forage sowing made plants invade easily on the forest floor, and light partial cutting (LPC) plot (500 stems/ha) had much higher number of undersory species than those of heavy partial cutting (HPC) plot (310 stems/ha) and control plot (1,270 stems/ha).

• The Plant Pathology Journal
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• v.38 no.1
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• pp.12-24
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• 2022

In this study, we conducted whole-genome sequencing with six species of Pectobacterium composed of seven strains, JR1.1, BP201601.1, JK2.1, HNP201719, MYP201603, PZ1, and HC, for the analysis of pathogenic factors associated with the genome of Pectobacterium. The genome sizes ranged from 4,724,337 bp to 5,208,618 bp, with the GC content ranging from 50.4% to 52.3%. The average nucleotide identity was 98% among the two Pectobacterium species and ranged from 88% to 96% among the remaining six species. A similar distribution was observed in the carbohydrate-active enzymes (CAZymes) class and extracellular plant cell wall degrading enzymes (PCWDEs). HC showed the highest number of enzymes in CAZymes and the lowest number in the extracellular PCWDEs. Six strains showed four subsets, and HC demonstrated three subsets, except hasDEF, in type I secretion system, while the type II secretion system of the seven strains was conserved. Components of human pathogens, such as Salmonella pathogenicity island 1 type type III secretion system (T3SS) and effectors, were identified in PZ1; T3SSa was not identified in HC. Two putative effectors, including hrpK, were identified in seven strains along with dspEF. We also identified 13 structural genes, six regulator genes, and five accessory genes in the type VI secretion system (T6SS) gene cluster of six Pectobacterium species, along with the loss of T6SS in PZ1. HC had two subsets, and JK2.1 had three subsets of T6SS. With the GxSxG motif, the phospholipase A gene did locate among tssID and duf4123 genes in the T6SSa cluster of all strains. Important domains were identified in the vgrG/paar islands, including duf4123, duf2235, vrr-nuc, and duf3396.

• Journal of Environmental Science International
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• v.4 no.3
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• pp.177-186
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• 1995

The seasonal changes and composition of phytoplankton of the Choonsan reservior were studied from November 1990 to October 1991. 195 taxa which belong to 65 genera, 150 species, 40 varieties and 1 forms were identified. Species number during summer monthes was higher than that of other seasons. Standing crops of phytoplankton were varied from $7.8\times10^5$ cells/l to $2.2\timesl0^6$ cells/$\ell$. The dominant species were Cryptomonas erose and Trachelomonas volvoina. Chlorophyll a contents of phytoplankton was varied from $1.36\mu\textrm{g}/\ell$ to $127.46\mu\textrm{g}/\ell$. The biotic indices of phytoplankton were very similar among three sites. Saprobien-system by index of species diversity suggests that the Choonsan reservior belongs to the oligosaprophic.

• Animal Systematics, Evolution and Diversity
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• v.28 no.4
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• pp.291-296
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• 2012

In North Korea, the first report of the family Tortricidae, comprising 34 species, was made in 1969. It includes three species of the genus Grapholita (G. inopinata, G. molesta, and G. turionana). Among them, G. turionana is now placed under the genus Blastesthia. In the present study, a total of four species of the genus Grapholita are recognized from North Korea, based on material deposited in the Hungarian Natural History Museum, Hungary. Of them, Grapholita molesta (Busck), is reported for the first time from North Korea. In the present study, G. inopinata was not found. All the known species are enumerated with illustrations of adults and genitalia. Also a key for the genus is given.