• Journal of Science and Technology Studies
• /
• v.2 no.1 s.3
• /
• pp.1-38
• /
• 2002

Recently KISTEP(Korea Institute of Science and Technology Evaluation and Planning) held an open forum for examining 'the Manuscript of National Science and Technology Standard Taxonomic System'. I submitted my opinion letter to the forum because I thought that the matter of setting the standard taxonomic system for Science and Technology is so closely related to the research concern of STS that it needs checking from the viewpoint of STS. This paper primarily focuses on making a criticism of and constructing an alternative to the mamuscript, but it goes so far as to ground the matter upon the STS viewpoint. I propose that we interpret an open forum related to science and technology as an example case of the community of inquiry. Further I try, standing in the context of learning to form a model of doing STS interdisciplinary research. In the context of decision I point out the problem with the 'scale' principle involved in categrizing criteria of the taxonomic system and argue that the problem leads to omitting STS from National Science and Technology Standard Taxonomic System although STS takes up science and technology themselves as its research concern proper. In the context or teaming I seek to set up a typical case study or STS. One of the typical STS research tasks is trying to construct a positive alternative to as well as make a criticism of a given suggestion, for clearer alternatives will, in him, provoke sharper criticisms or safer acceptances. I hope that the model in this paper will exemplify such an alternating procedure of criticism and acceptance.

• ETRI Journal
• /
• v.39 no.2
• /
• pp.191-201
• /
• 2017

This paper proposes an approach using taxonomic relatedness for answer-type recognition and type coercion in a question-answering system. We introduce a question analysis method for a lexical answer type (LAT) and semantic answer type (SAT) and describe the construction of a taxonomy linking them. We also analyze the effectiveness of type coercion based on the taxonomic relatedness of both ATs. Compared with the rule-based approach of IBM's Watson, our LAT detector, which combines rule-based and machine-learning approaches, achieves an 11.04% recall improvement without a sharp decline in precision. Our SAT classifier with a relatedness-based validation method achieves a precision of 73.55%. For type coercion using the taxonomic relatedness between both ATs and answer candidates, we construct an answer-type taxonomy that has a semantic relationship between the two ATs. In this paper, we introduce how to link heterogeneous lexical knowledge bases. We propose three strategies for type coercion based on the relatedness between the two ATs and answer candidates in this taxonomy. Finally, we demonstrate that this combination of individual type coercion creates a synergistic effect.

• The Sea:JOURNAL OF THE KOREAN SOCIETY OF OCEANOGRAPHY
• /
• v.26 no.3
• /
• pp.263-276
• /
• 2021

Marine benthic organisms have been used as the indicators for the environment assessment and recently considered as a very important component in the biodiversity and ecosystem restoration. In Korean waters, the quantitative data on marine benthos was used as one of major components for the marine pollution assessment for 50 years since 1970s. The species identification which is an important factor for the quantitative biological data was mainly performed by the marine benthic ecologists. This leads to the deterioration of the data quality on marine benthos from the misidentication of major taxonomic groups due to the lack of taxonomic expertise in Korea. This taxonomic problem has not been solved until now and remains in most data from national research projects on the marine ecosystems in Korean waters. Here we introduce the quality assurance and control (QA/QC) system for the marine biological data in UK, that is, NMBAQC (Northeast Atlantic Marine Biological Analytic and Quality Control) Scheme which has been performed by private companies to solve similar species identification problems in UK. This scheme asks for all marine laboratories which want to participate to any national monitoring programs in UK to keep their identification potency at high level by the internal quality assurance systems and provides a series of taxonomic workshops and literature to increase their capability. They also performs the external quality control for the marine laboratories by performing the Ring Test using standard specimens on various faunal groups. In the case of Korea, there are few taxonomic expertise in two existing national institutions and so they can't solve the taxonomic problems in marine benthic fauna data. We would like to provide a few necessary suggestions to solve the taxonomic problems in Korean marine biological data in short-terms and long-terms: (1) the identification of all dominant species in marine biological data should be confirmed by taxonomic expertise, (2) all the national research programs should include taxonomic experts, and (3) establishing a private company, like the Korea marine organism identification association (KMOIA), which can perform the QA/QC system on the marine organisms and support all Korean marine laboratories by providing taxonomic literature and species identification workshops to enhance their potency. The last suggestion needs more efforts and time for the establishment of that taxonomic company by gathering the detailed contents and related opinions from diverse stakeholders in Korea.

• ALGAE
• /
• v.35 no.3
• /
• pp.293-301
• /
• 2020

The applications of DNA barcoding have a wide range of uses, such as in taxonomic studies to help elucidate cryptic species and phylogenetic relationships and analyzing environmental samples for biodiversity monitoring and conservation assessments of species. After obtaining the DNA barcode sequences, sequence similarity-based homology analysis is commonly used. This means that the obtained barcode sequences are compared to the DNA barcode reference databases. This bioinformatic analysis necessarily implies that the overall quantity and quality of the reference databases must be stringently monitored to not have an adverse impact on the accuracy of species identification. With the development of next-generation sequencing techniques, a noticeably large number of DNA barcode sequences have been produced and are stored in online databases, but their degree of validity, accuracy, and reliability have not been extensively investigated. In this study, we investigated the extent to which the amount and types of erroneous barcode sequences were deposited in publicly accessible databases. Over 4.1 million sequences were investigated in three largescale DNA barcode databases (NCBI GenBank, Barcode of Life Data System [BOLD], and Protist Ribosomal Reference database [PR2]) for four major DNA barcodes (cytochrome c oxidase subunit 1 [COI], internal transcribed spacer [ITS], ribulose bisphosphate carboxylase large chain [rbcL], and 18S ribosomal RNA [18S rRNA]); approximately 2% of erroneous barcode sequences were found and their taxonomic distributions were uneven. Consequently, our present findings provide compelling evidence of data quality problems along with insufficient and unreliable annotation of taxonomic data in DNA barcode databases. Therefore, we suggest that if ambiguous taxa are presented during barcoding analysis, further validation with other DNA barcode loci or morphological characters should be mandated.

• Korean Journal of Agricultural Science
• /
• v.16 no.2
• /
• pp.163-168
• /
• 1989

Fourty-four isolates showed acetylene-reducing(nitrogenase)activity under the atmosphere of 89% Ar, 10% $C_2H_2$ and 1 % $O_{2{\cdot}}$, these nitrogen-fixing isolates characterized chemotaxonomically and their taxonomic status was disscussed; twenty-three isolates corresponded to Azospirillum. They were curved/spiral rods, gram negative, motile by a polar flagellum, and also utilized glucose in nitrogen free medild by a polar flagellum, and also utilized glucose in nitrogen free medium. but the cellular fatty acid composition and quinone system of these isolates showed quite different characteristics with reference strains. Therefore, the taxonomic status of this nitrogen-fixing bacteria is disscussed and a new species Azospirillum. Sixty forur isolates utilized C-l compounds such as methanol and formic acid. phenotypic and chemotaxonomic characteristics of methanol utilizing isolates were investigated and their taxonomic status was discussed; Twenty-one isolates corresponded to Hyphomicrobium and for the other regular rods and irregular rods utilizing isolates showed different cellular fatty acid composition. These isolates were grouped into 8 cluster analysis and similarity values based on correlation coefficients. Among these 8 clusters, two corresponded Pseudomonas and for the other were not decided.

• Journal of Species Research
• /
• v.8 no.2
• /
• pp.197-214
• /
• 2019

The taxonomic hierarchy of the phylum Proteobacteria was assessed, after which the isolation and classification state of Proteobacteria species with valid names for Korean indigenous isolates were studied. The hierarchical taxonomic system of the phylum Proteobacteria began in 1809 when the genus Polyangium was first reported and has been generally adopted from 2001 based on the road map of Bergey's Manual of Systematic Bacteriology. Until February 2018, the phylum Proteobacteria consisted of eight classes, 44 orders, 120 families, and more than 1,000 genera. Proteobacteria species isolated from various environments in Korea have been reported since 1999, and 644 species have been approved as of February 2018. In this study, all novel Proteobacteria species from Korean environments were affiliated with four classes, 25 orders, 65 families, and 261 genera. A total of 304 species belonged to the class Alphaproteobacteria, 257 species to the class Gammaproteobacteria, 82 species to the class Betaproteobacteria, and one species to the class Epsilonproteobacteria. The predominant orders were Rhodobacterales, Sphingomonadales, Burkholderiales, Lysobacterales and Alteromonadales. The most diverse and greatest number of novel Proteobacteria species were isolated from marine environments. Proteobacteria species were isolated from the whole territory of Korea, with especially large numbers from the regions of Chungnam/Daejeon, Gyeonggi/Seoul/Incheon, and Jeonnam/Gwangju. Most Halomonadaceae species isolated from Korean fermented foods and solar salterns were halophilic or halotolerant. Air-borne members of the genera Microvirga, Methylobacterium, and Massilia had common characteristics in terms of G+C content, major respiratory quinones, and major polar lipids.

• Journal of Plant Biology
• /
• v.29 no.4
• /
• pp.329-340
• /
• 1986

This study is attemped to discuss the taxonomic significances as have been raised up to now in the study of Lauraceous inflorescence. Lauraceous inflorescences are recognized as panicle, umbel, dichasium, or fascicle by various investigators. Reconsidering the inflorescence or existence of involucre, which has been accepted as important character in the present classification system, it is assumed that the study about them has not so far carried out a deliberate analysis over inflorescent morphology, nor has recognized the existence of involucre. Furthermore, all the materials examined in this study have fugacious or persistent involucres which are leafy, scaly or membraneous. Therefore, it was found that the kinds, fugacity or persistency of involucres are significant in the problems of classification of Laureaceae. Korean Lauraceous inflorescence has evolved into the direction of continuous reduction in its peduncle: from compound dichasium to capitate umbel.

• The Bulletin of The Korean Astronomical Society
• /
• v.44 no.1
• /
• pp.83.1-83.1
• /
• 2019

Identifying asteroid families, which are groups of asteroids with similar orbital properties, is important for understanding the formation and evolution of the solar system, and probing the origins of Near-Earth Objects (NEOs). Although asteroid taxonomy can be used to identify and refine asteroid families, there are numerous asteroids which are not taxonomically classified yet. Korea Microlensing Telescope Network (KMTNet) can be useful to investigate types of that asteroids, because the telescope can observe a number of asteroids at once by its large field of view. Using KMTNet data, we confirmed that the taxonomic classification of the asteroids is possible by plotting color-color diagram. There is a clear division between C-type and S-type, but ambiguous division between C-type and X-type. In the future, we will observe and classify asteroids which are not classified yet and utilize the data to identify and refine asteroid families.

• Korean Journal of Plant Taxonomy
• /
• v.37 no.3
• /
• pp.275-308
• /
• 2007

For 20 taxa of Korean Allium, including 16 species and 5 varieties, examined were morphological characters (i.e. sexuality, structure and shape of underground part, types and growing patterns of leaf and scape, and shapes of perianth, filament and pistil). The specialization and the evolutionary trends of taxonomic characters were inferred from morphological examination. Taxonomic relationships and system of Korean Allium were also studied. The characters showing evolutionary trends were the structure and shape of underground part including rhizome and bulb, leaf, scape, inflorescens, filament and ovary. It seemed that thin and short rhizome developed from thick and long one, and the membranous simple bulb tunic evolved into fibrous reticulate one. The presence of hyaline sheath in A. monanthum of sect. Microscordum was apomorphic. Both angular leaf blade with 2-rowed vascular bundle and flat blade with 1-rowed vascular bundle were developed from terete one with 2-rowed vascular bundle. The base of filament have differentiated from entire to toothed, and 2-ovuled ovary as well as erect scape before flowering was plesiomorphic type. In addition, sexuality, structure of underground part, the presence of hyaline sheath and cross-section structure of leaf were taxonomic characters with the level of the subgenus in this genus. Shape of rhizome, bulb, leaf, scape and pedicel discriminated each section from other ones in the subgenera easily. The shape and arrangement of perianth and filaments were the diagnostic characters for species level along with shape of ovary and stigma.

• Journal of Wetlands Research
• /
• v.14 no.3
• /
• pp.429-438
• /
• 2012

Han River is very important as a source of drinking water in metropolitan area. This study was conducted to figure out diversity and dynamics of plankton community in the seven lakes (lakes Paro, Chunchon, Soyang, Uiam, Chungpyung, Paldang, Chungju) of Han Riversystem. A total of 76 genera and 121 species were investigated by taxonomic identification in November 2008. Cyclotella sp. and Microcystis sp. was a dominant species in lake Paro and Chungju respectively. Aulacoseira granulata was dominant in lakes Chunchon, Paldang and Chungpyung. And Fragilalia crotonesis was a dominant species in lake Soyang and Uiam. Our results can be useful when compared to the results using molecular biological method to supplement taxonomic identification.