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Performance of GFR service for TCP traffic in ATM switches with FIFO shared buffer (FIFO 공유 버퍼를 갖는 ATM 스위치에서 TCP 트래픽을 위한 GFR 성능 평가)

  • Park Inyong
    • Journal of Korea Society of Industrial Information Systems
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    • v.10 no.1
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    • pp.49-57
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    • 2005
  • ATM Form has defined the guaranteed frame rate (GFR) service to provide minimum cell rate (MCR) guarantees for TCP traffic in ATM networks and allow it to fairly share residual bandwidth. GFR switch implementation consists of the frame-based generic cell rate algorithm (F-GCRA) and a frame forwarding mechanism. The F-GCRA identifies frames that are eligible for an MCR guarantee. The frame forwarding mechanism buffers cells at a frame unit according to information provided by the F-GCRA and forwards the buffered cells to an output port according to its scheduling discipline. A simple GFR mechanism with shared buffer with a global threshold is a feasible implementation mechanism, but has been known that it is insufficient to guarantee the MCR. This paper has estimated performance of GFR service for TCP traffic over ATM switches with the simple FIFO-based mechanism

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Cofactor Regeneration Using Permeabilized Escherichia coli Expressing NAD(P)+-Dependent Glycerol-3-Phosphate Dehydrogenase

  • Rho, Ho Sik;Choi, Kyungoh
    • Journal of Microbiology and Biotechnology
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    • v.28 no.8
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    • pp.1346-1351
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    • 2018
  • Oxidoreductases are effective biocatalysts, but their practical use is limited by the need for large quantities of NAD(P)H. In this study, a whole-cell biocatalyst for NAD(P)H cofactor regeneration was developed using the economical substrate glycerol. This cofactor regeneration system employs permeabilized Escherichia coli cells in which the glpD and gldA genes were deleted and the gpsA gene, which encodes $NAD(P)^+-dependent$ glycerol-3-phosphate dehydrogenase, was overexpressed. These manipulations were applied to block a side reaction (i.e., the conversion of glycerol to dihydroxyacetone) and to switch the glpD-encoding enzyme reaction to a gpsA-encoding enzyme reaction that generates both NADH and NADPH. We demonstrated the performance of the cofactor regeneration system using a lactate dehydrogenase reaction as a coupling reaction model. The developed biocatalyst involves an economical substrate, bifunctional regeneration of NAD(P)H, and simple reaction conditions as well as a stable environment for enzymes, and is thus applicable to a variety of oxidoreductase reactions requiring NAD(P)H regeneration.

Structure and Function of HtrA Family Proteins, the Key Players in Protein Quality Control

  • Kim, Dong-Young;Kim, Kyeong-Kyu
    • BMB Reports
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    • v.38 no.3
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    • pp.266-274
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    • 2005
  • High temperature requirement A (HtrA) and its homologues constitute the HtrA familiy proteins, a group of heat shock-induced serine proteases. Bacterial HtrA proteins perform crucial functions with regard to protein quality control in the periplasmic space, functioning as both molecular chaperones and proteases. In contrast to other bacterial quality control proteins, including ClpXP, ClpAP, and HslUV, HtrA proteins contain no regulatory components or ATP binding domains. Thus, they are commonly referred to as ATP-independent chaperone proteases. Whereas the function of ATP-dependent chaperone-proteases is regulated by ATP hydrolysis, HtrA exhibits a PDZ domain and a temperature-dependent switch mechanism, which effects the change in its function from molecular chaperone to protease. This mechanism is also related to substrate recognition and the fine control of its function. Structural and biochemical analyses of the three HtrA proteins, DegP, DegQ, and DegS, have provided us with clues as to the functional regulation of HtrA proteins, as well as their roles in protein quality control at atomic scales. The objective of this brief review is to discuss some of the recent studies which have been conducted regarding the structure and function of these HtrA proteins, and to compare their roles in the context of protein quality control.

Dynamic Path Reservation Scheme for Fast Inter-switch Handover in Wireless ATM Networks (무선 ATM 망에서 이동교환기간 빠른 핸드오버를 위한 동적 경로 예약 기법)

  • Lee, Bong-Ju;Lee, Nam-Suk;Ahn, Kye-Hyun;Kim, Young-Chon
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.28 no.1A
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    • pp.7-16
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    • 2003
  • Handover is very important to support the mobility of user because wireless ATM networks have smaller cell size such as micro/pico cell for broadband mobile multimedia service In this paper, we propose dynamic path reservation handover scheme for fast inter-MSC (Mobile Switching Center) handovers To reduce the handover delay for connection re-routing, the proposed scheme reserves virtual channels from nearest common node to neighbor MSC in advance Especially, our handover scheme predicts the number of inter-MSC handover calls at each period by the prediction algorithm and reserve virtual channels The simulation and analysis results show that our scheme reduce handover complexity and has higher reservation channel utilization, compared with DVCT scheme.

A Study on Efficient Transmission Rate Control of ABR Traffic in ATM (ATM 망에서 효율적인 ABR 트래픽 전송률 제어에 관한 연구)

  • 정명수
    • The Journal of Korean Institute of Communications and Information Sciences
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    • v.25 no.9A
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    • pp.1413-1421
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    • 2000
  • In this paper, we analyze previous flow control algorithm for serving ABR traffic, and then propose the algorithm which calculate fair transmission rate and control efficiently ABR traffic using VS/VD switch which has an effect on WAN environment with long delay. For getting the transmission rate, the proposed algorithm use FMMAR as ER scheme which calculate exactly the fair share. And, in large delay state. we can obtain fair cell sharing by calculating transmission rates which obtained by transmitted queue length information of VD to VS for serve and drain cell in queue Through the computer simulation, we evaluate the performance of proposed algorithm. According to the results, the proposed algorithm shows good performance.

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Structure and Function of the Influenza A Virus Non-Structural Protein 1

  • Han, Chang Woo;Jeong, Mi Suk;Jang, Se Bok
    • Journal of Microbiology and Biotechnology
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    • v.29 no.8
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    • pp.1184-1192
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    • 2019
  • The influenza A virus is a highly infectious respiratory pathogen that sickens many people with respiratory disease annually. To prevent outbreaks of this viral infection, an understanding of the characteristics of virus-host interaction and development of an anti-viral agent is urgently needed. The influenza A virus can infect mammalian species including humans, pigs, horses and seals. Furthermore, this virus can switch hosts and form a novel lineage. This so-called zoonotic infection provides an opportunity for virus adaptation to the new host and leads to pandemics. Most influenza A viruses express proteins that antagonize the antiviral defense of the host cell. The non-structural protein 1 (NS1) of the influenza A virus is the most important viral regulatory factor controlling cellular processes to modulate host cell gene expression and double-stranded RNA (dsRNA)-mediated antiviral response. This review focuses on the influenza A virus NS1 protein and outlines current issues including the life cycle of the influenza A virus, structural characterization of the influenza A virus NS1, interaction between NS1 and host immune response factor, and design of inhibitors resistant to the influenza A virus.

Targeting Cancer Metabolism - Revisiting the Warburg Effects

  • Tran, Quangdon;Lee, Hyunji;Park, Jisoo;Kim, Seon-Hwan;Park, Jongsun
    • Toxicological Research
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    • v.32 no.3
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    • pp.177-193
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    • 2016
  • After more than half of century since the Warburg effect was described, this atypical metabolism has been standing true for almost every type of cancer, exhibiting higher glycolysis and lactate metabolism and defective mitochondrial ATP production. This phenomenon had attracted many scientists to the problem of elucidating the mechanism of, and reason for, this effect. Several models based on oncogenic studies have been proposed, such as the accumulation of mitochondrial gene mutations, the switch from oxidative phosphorylation respiration to glycolysis, the enhancement of lactate metabolism, and the alteration of glycolytic genes. Whether the Warburg phenomenon is the consequence of genetic dysregulation in cancer or the cause of cancer remains unknown. Moreover, the exact reasons and physiological values of this peculiar metabolism in cancer remain unclear. Although there are some pharmacological compounds, such as 2-deoxy-D-glucose, dichloroacetic acid, and 3-bromopyruvate, therapeutic strategies, including diet, have been developed based on targeting the Warburg effect. In this review, we will revisit the Warburg effect to determine how much scientists currently understand about this phenomenon and how we can treat the cancer based on targeting metabolism.

Electrical Switching Characteristics of Ge-Se Thin Films for ReRAM Cell Applications

  • Kim, Jang-Han;Nam, Ki-Hyun;Chung, Hong-Bay
    • Proceedings of the Korean Vacuum Society Conference
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    • 2012.08a
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    • pp.343-344
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    • 2012
  • It has been known since the mid 1960s that Ag can be photodissolved in chalcogenide glasses to form materials with interesting technological properties. In the 40 years since, this effect has been used in diverse applications such as the fabrication of relief images in optical elements, micro photolithographic schemes, and for direct imaging by photoinduced Ag surface deposition. ReRAM, also known as conductive bridging RAM (CBRAM), is a resistive switching memory based on non-volatile formation and dissolution of a conductive filament in a solid electrolyte. Especially, Ag-doped chalcogenide glasses and thin films have become attractive materials for fundamental research of their structure, properties, and preparation. Ag-doped chalcogenide glasses have been used in the formation of solid electrolyte which is the active medium in ReRAM devices. In this paper, we investigated the nature of thin films formed by the photo-dissolution of Ag into Ge-Se glasses for use in ReRAM devices. These devices rely on ion transport in the film so produced to create electrically programmable resistance states. [1-3] We have demonstrated functionalities of Ag doped chalcogenide glasses based on their capabilities as solid electrolytes. Formation of such amorphous systems by the introduction of Ag+ ions photo-induced diffusion in thin chalcogenide films is considered. The influence of Ag+ ions is regarded in terms of diffusion kinetics and Ag saturation is related to the composition of the hosting material. Saturated Ag+ ions have been used in the formation of conductive filaments at the solid electrolyte which is the active medium in ReRAM devices. Following fabrication, the cell displays a metal-insulator-metal structure. We measured the I-V characteristics of a cell, similar results were obtained with different via sizes, due to the filamentary nature of resistance switching in ReRAM cell. As the voltage is swept from 0 V to a positive top electrode voltage, the device switches from a high resistive to a low resistive, or set. The low conducting, or reset, state can be restored by means of a negative voltage sweep where the switch-off of the device usually occurs.

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AtMYB7 Acts as a repressor of lignin biosynthesis in Arabidopsis (애기장대 MYB7 유전자의 리그닌 생합성 억제 조절)

  • Kim, Won-Chan
    • Journal of Applied Biological Chemistry
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    • v.59 no.3
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    • pp.215-220
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    • 2016
  • Abstract Secondary cell wall is the most abundant biomass produced by plants. Plant secondary cell wall is composed of a complex mixture of cellulose, hemicellulose, and lignin. Lignin, a phenolic polymer that hinders the degradation of cell wall polysaccharides to simple sugars destined for fermentation to bio-ethanol. Cell wall biosynthesis pathway-specific biomass engineering offers an attractive 'genetic pretreatment' strategy to improve bioenergy feedstock. Recently, we found a transcription factor, MYB7, which is a transcriptional switch that may turns off the genes necessary for lignin biosynthesis. To gain insights into MYB7 mediated transcriptional regulation, we first established a dominant suppression system in Arabidopsis by expressing MYB7-SRDX. Then we used a transient transcriptional activation assay to confirm that MYB7 suppress the transcription of the lignin biosynthetic gene. Taken together, we conclude that MYB7 function as a repressor of the genes involved in the lignin biosynthesis.

Development of Candida albicans Biofilms Is Diminished by Paeonia lactiflora via Obstruction of Cell Adhesion and Cell Lysis

  • Lee, Heung-Shick;Kim, Younhee
    • Journal of Microbiology and Biotechnology
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    • v.28 no.3
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    • pp.482-490
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    • 2018
  • Candida albicans infections are often problematic to treat owing to antifungal resistance, as such infections are mostly associated with biofilms. The ability of C. albicans to switch from a budding yeast to filamentous hyphae and to adhere to host cells or various surfaces supports biofilm formation. Previously, the ethanol extract from Paeonia lactiflora was reported to inhibit cell wall synthesis and cause depolarization and permeabilization of the cell membrane in C. albicans. In this study, the P. lactiflora extract was found to significantly reduce the initial stage of C. albicans biofilms from 12 clinical isolates by 38.4%. Thus, to assess the action mechanism, the effect of the P. lactiflora extract on the adhesion of C. albicans cells to polystyrene and germ tube formation was investigated using a microscopic analysis. The density of the adherent cells was diminished following incubation with the P. lactiflora extract in an acidic medium. Additionally, the P. lactiflora-treated C. albicans cells were mostly composed of less virulent pseudohyphae, and ruptured debris was found in the serum-containing medium. A quantitative real-time PCR analysis indicated that P. lactiflora downregulated the expression of C. albicans hypha-specific genes: ALS3 by 65% (p = 0.004), ECE1 by 34.9% (p = 0.001), HWP1 by 29.2% (p = 0.002), and SAP1 by 37.5% (p = 0.001), matching the microscopic analysis of the P. lactiflora action on biofilm formation. Therefore, the current findings demonstrate that the P. lactiflora ethanol extract is effective in inhibiting C. albicans biofilms in vitro, suggesting its therapeutic potential for the treatment of biofilm-associated infections.