• Journal of Ecology and Environment
• /
• 제42권3호
• /
• pp.90-102
• /
• 2018

Background: We sought to understand the relationship between the seed bank and vegetation in abandoned rice paddies in South Korea, in order to guide management of these sites. We investigated the floristic composition and species richness of the soil seed bank and ground vegetation in former paddies along three seral gradients (wet meadow, young forest, and mature forest) in Gwangneung Forest Biosphere Reserve. Results: Seed bank samples contained 59 species, of which the dominant families were Cyperaceae, Gramineae, and Polygonaceae. Species richness and seedling density (59 taxa and 19,121 germinants from all samples) were high. Carex spp. (11, 921 germinants) were the dominant taxa. The species composition in the seed bank changed gradually as the land transitioned from wet meadow to mature forest. Sørensen's index of similarity between above- and below-ground vegetation was 29.3% for wet meadow, 10.8% for young forest, and 2.1% for mature forest. Germinant density also declined, with 10, 256 germinants for wet meadow, 6445 germinants for young forest, and 2420 germinants for mature forest. Conclusions: Changes in aboveground environment and life history traits such as amphicarpic plants, likely affect the composition of soil seed bank species. Abandoned paddy fields may be good sites for restoration of wetland forest and conservation of wetland habitat. Some intervention may be required to promote the recovery of a natural species assemblage.

• Journal of Forest and Environmental Science
• /
• 제33권2호
• /
• pp.122-129
• /
• 2017

Understanding how future climate conditions will be impact on the biodiversity and species composition is important, because biodiversity becomes more important in environment assessment. To understand the biological changes including diversity and species composition over time (temporal variation within a year), the species diversity and composition of ground beetles were investigated in two well-preserved areas in the Sobaeksan National Park using pitfall traps. In addition, relationships between ground beetles and environmental variables were studied by considering temporal variation. We collected 2,146 ground beetle specimens representing 45 species, and individual-based rarefaction curves indicated that similar species richness was found between Geumseon Valley (GV) and Namcheon Valley (NV). The Bray-Curtis matrix comparisons between study sites were characterized by similar ground beetles sample heterogeneity, while temporal variations in abundance, species richness, and ${\beta}-diversity$ of ground beetles showed rather difference over time according to location of study sites. In GV site, minimum temperature was selected as the best predictor for abundance, species richness, and ${\beta}-diversity$ of ground beetles, while those relationships in NV site were more complicated. In conclusion, our study suggests that understanding the different response of ground beetles to climatic variables related to local habitat conditions is important to predict the effect of climate change on biological communities.

• 한국유기농업학회지
• /
• 제27권4호
• /
• pp.463-477
• /
• 2019

This study was conducted to compare the community structure and biodiversity of epigeic spiders between pear fields cultivated by integrated pest management (IPM) and organic methods. This is the first study of this kind to be conducted in Korea. Eighty-four spider species from 22 families were identified among the collected 2,489 arthropods, with 754 individuals being sampled from IPM fields and 1,735 individuals from organic fields. Generally, Theridiidae, Linyphiidae, Lycosidae, Agelenidae, Gnaphosidae, and Salticidae were the dominant spider families in the pear orchard regardless of the farming methods, and species richness and abundance were higher in organic fields than in IPM fields. The dominant species were the wolf spiders (Lycosidae) and stone spiders (Gnaphosidae), and their cumulative abundance was 70.7% in IPM fields and 72.7% in organic fields. The community structure between organic and IPM fields was heterogeneous, with a 45% similarity level. Biodiversity, species richness, abundance, and species diversity index were higher in organic fields than in IPM fields, and significantly different between the farming methods. Seasonal fluctuations in biodiversity were similar in both IPM and organic fields. The species richness and species diversity index increased and the abundance decreased in the second half of the cultivation period. This study on the community structure and biodiversity of epigeic spiders, which form one of the most important predator groups, will provide principal ecological and faunistic information required to maintain the biodiversity of useful arthropods in agricultural ecosystems and help implement sustainable agriculture based on the active use of natural enemies.

• Journal of Ecology and Environment
• /
• 제32권2호
• /
• pp.129-135
• /
• 2009

We investigated the moth diversity on an island of southern sea of Korea. We collected moths at three sites on the island of Bogildo, Wando-gun, Jeonnam using a 22-watt ultraviolet light trap from May to October, 2008, and identified a total of 272 species and 948 individuals in 13 families. Species of Noctuidae was the most abundant, with 107 species and 318 individuals, followed by Geometridae (62 species and 147 individuals) and Pyralidae (53 species and 269 individuals). The graph of the estimated species richness in Chao 1 (432.25$\pm$37.39) did not reach an asymptote, which suggests that more moth species could be identified on the island through further sampling. An arctiid moth, Miltochrista striata, was the most abundant species captured in this study. Monthly changes in moth species richness and abundance formed M-shaped curves, with peaks in early summer (June) and late summer (August). Cluster analysis of seven sites on three islands (Aphaedo Island, Sinan-gun, Oenarodo Island, Goheung-gun and Bogildo Island) divided the sites into two groups. Distances among sites and habitat types may play an important role in determining the similarities of moth faunas among sites.

• Mycobiology
• /
• 제48권1호
• /
• pp.20-28
• /
• 2020

Soil degradation can have an impact on the soil microbiota, but its specific effects on soil fungal communities are poorly understood. In this work, we studied the impact of soil degradation on the richness and diversity of communities of soil fungi, including three different degrees of degradation in Germany and Panama. Soil fungi were isolated monthly using the soil-sprinkling method for 8 months in Germany and 3 months in Panama, and characterized by morphological and molecular data. Soil physico-chemical properties were measured and correlated with the observed values of fungal diversity. We isolated a total of 71 fungal species, 47 from Germany, and 32 from Panama. Soil properties were not associated with fungal richness, diversity, or composition in soils, with the exception of soil compaction in Germany. The geographic location was a strong determinant of the soil fungal species composition although in both countries there was dominance by members of the orders Eurotiales and Hypocreales. In conclusion, the results of this work do not show any evident influence of soil degradation on communities of soil fungi in Germany or Panama.

• Journal of Microbiology
• /
• 제45권1호
• /
• pp.1-5
• /
• 2007

The bacterial compositions between the dental unit water system and human saliva were characterized and compared by direct sequence analysis of 16S rDNA clone libraries. Based on the species richness estimation, bacterial diversity in the dental unit water system (DUW) was more diverse than that of the human saliva (HS). The Chaol estimates of species richness in HS and DUW samples were 12.0 and 72.4, respectively. The total numbers of OTUs observed in the combined libraries accounted for 83% (HS) and 59% (DUW) of the Chaol diversity estimate as defined at the 80% similarity threshold. Based on the sequence analysis, the phylum Proteobacteria was the major group in both clone libraries at phylum level. DUW clone library contained 80.0% Proteobacteria, 8.0% Bacteroides, 4.0% Nitrospira, 4.0% Firmicutes, 2.0% Planctomycetes and 2.0% Acidobacteria. On the other hand, human saliva (HS) clone library contained 55.5% Proteobacteria, 36.1% Firmicutes and 8.4% Bacteroides. The majority of bacteria identified belonged to phylum Proteobacteria in both samples. In dental unit water system (DUW), Alphaproteobacteria was detected as the major group. There was no evidence of the bacterial contamination due to a dental treatment. Most sequences were related to microorganisms derived from biofilm in oligotrophic environments.

• 한국물환경학회지
• /
• 제39권4호
• /
• pp.288-301
• /
• 2023

This study aims to identify benthic macroinvertebrate fauna inhabiting at the mountain valley stream (Mt. Cheonggye) in Korea and the relationship between physical environmental factors and biological indices. Benthic macroinvertebrates were collected at five locations on August 24 and October 14, 2020, and were identified as 4 phyla, 7 classes, 16 orders, 42 families, and 72 species. Dominance ranged from 0.38 to 0.59, diversity 2.81 to 3.75, richness 3.25 to 4.63, evenness 0.65 to 0.84, and %EPT (Ephemeroptera-PlecopteraTrichoptera) richness value 42% to 73%, respectively. All sites were evaluated as a very good status by mostly biological indices based on tolerance of indicator organisms in Korea. As a result of principal component analysis, biological indices are classified into species-level indices and higher cartegory-level indices according to the taxonomic level of the indicator organism considered in each index. As a result of canonical correspondence analysis, it was confirmed that current velocity was a major factor that increased species richness and classified biological indices according to taxonomic category level. Water depth was a major factor related to the community indices, and the deeper the water depth, the lower the diversity and the evenness.

• 환경생물
• /
• 제25권1호
• /
• pp.42-55
• /
• 2007

We investigated the species richness of lepidopteran insects (excluding butterflies and microlepidoptera) of Mt. Seungdal-san, Muan-gun, Jeollannam-do, Korea, from 2003 to 2005 using two portable light traps. A total of species comprised 423 species belongs to 17 families were identified. The family Noctuidae with 209 species was dominant in the area followed by Geometridae with 132 species. Based on the number of individuals collected, Geometridae was the highest mostly due to an ennomine species (Alcis angulifera). Monthly fluctuations of moth species richness present an M-shaped curve with two high peaks at June and August. Comparisons of species diversity of yearly captures revealed that the diversity of 2003 was higher than that of 2004, but the diversities of between 2003 and 2005, and between 2004 and 2005 were no different.

• 환경생물
• /
• 제26권3호
• /
• pp.192-202
• /
• 2008

The present study aimed to investigate the local moth fauna and population change during a year on Island Oenarodo (N34$^{\circ}$27'50", E127$^{\circ}$28'06", 74 m a. s. l.), Goheung-gun, Jeonnam. Moth collecting was carried out using a light trap from March to October, 2007. A total of 231 species and 562 individuals in 14 families were identified. Species of Noctuidae were the most abundant with 86 species and 163 individuals, followed by Geometridae (60 species and 147 individuals) and Pyralidae (39 species and 135 individuals), respectively. Monthly changes of moths species richness and abundance were M-shaped with two peaks at late Spring and late Summer. During the study, a geometrid, Menophra senilis, and a pyralid, Endotricha olivacealis were most abundant with 16 individuals. The estimated species richness using Chao 1 identified 646 species, suggesting that we need more extensive and long-term survey for the better understanding of the total moth fauna on the island.

• Journal of Oral Medicine and Pain
• /
• 제47권1호
• /
• pp.10-26
• /
• 2022

Purpose: The purpose of this study was to investigate whether various saliva collection methods affect the observed salivary microbiome and whether microbiomes of stimulated and unstimulated saliva and plaque differ in richness and diversity. Methods: Seven sampling methods for unstimulated saliva, stimulated saliva, and plaque samples were applied to six orally and systemically healthy participants. Bacterial 16S ribosomal RNA genes of 10 major oral bacterial species, namely, Aggregatibacter actinomycetemcomitans, Porphyromonas gingivalis, Tannerella forsythia, Treponema denticola, Fusobacterium nucleatum, Prevotella intermedia, Prevotella nigrescens, Streptococcus mitis, Streptococcus sobrinus, and Lactobacillus casei, were analyzed by real-time polymerase chain reaction. We comprehensively examined the dependence of the amount of bacterial ribosomal DNA (rDNA), bacterial-community composition, and relative abundance of each species on sample collection methods. Results: There were significant differences in the bacterial rDNA copy number depending on the collection method in three species: F. nucleatum, P. nigrescens, and S. mitis. The species with the highest richness was S. mitis, with the range from 89.31% to 100.00%, followed by F. nucleatum, P. nigrescens, T. denticola, T. forsythia, and P. intermedia, and the sum of the proportions of the remaining five species was less than 1%. The species with the lowest observed richness was P. gingivalis (<0.1%). The Shannon diversity index was the highest in unstimulated saliva collected with a funnel (4.449). The Shannon diversity index was higher in plaque samples (3.623) than in unstimulated (3.171) and stimulated (3.129) saliva and in mouthwash saliva samples (2.061). Conclusions: The oral microbial profile of saliva samples can be affected by sample collection methods, and saliva differs from plaque in the microbiome. An easy and rapid technique for saliva collection is desirable; however, observed microbial-community composition may more accurately reflect the actual microbiome when unstimulated saliva is assayed.