• 한국수산과학회지
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• 제50권2호
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• pp.195-206
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• 2017

Joint time-frequency images of the broadband echo signals of six fish species were obtained using the smoothed pseudo-Wigner-Ville distribution in controlled environments. Affine transformation and principal component analysis were used to obtain eigenimages that provided species-specific acoustic features for each of the six fish species. The echo images of an unknown fish species, acquired in real time and in a fully automated fashion, were identified by finding the smallest Euclidean or Mahalanobis distance between each combination of weight matrices of the test image of the fish species to be identified and of the eigenimage classes of each of six fish species in the training set. The experimental results showed that the Mahalanobis classifier performed better than the Euclidean classifier in identifying both single- and mixed-species groups of all species assessed.

• 한국환경과학회지
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• 제17권8호
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• pp.879-889
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• 2008

Community structure of benthic macroinvertebrates was investigated from Gigye stream, Pohang, Korea from May to November, 2007. As results, total of 108 species of macroinvertebrates under 49 families, 15 orders, 5 classes in 3 phyla were identified. The number of species was the most abundantly revealed in aquatic insects (class Insecta) with 86 species (82.6%) under 7 orders. The phylum Mollusca (10 species, 9.2%) and the phylum Annelida (6 species, 5.6%) were followed in order. In the class Crustacea, 6 species (5.6%) were distributed. In aquatic insects, the order Odonata was the most abundant taxon (20 species, 23.3%). Seventeen species (19.8%) of the order Ephemeroptera and 16 species (18.6%) of the Coleoptera were followed. The primary dominant species in the stream was Cloeon dipterum of Ephemeroptera. For community analysis, the values of diversity index (H'), evenness index (J'), dominance index (DI) and richness index (RI) were studied and the average values of them were 5.65, 0.84, 0.13, and 13.18, respectively.

• 수산해양기술연구
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• 제52권1호
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• pp.48-55
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• 2016

The species composition and distribution of catches by dredge gear in the Yeongil Bay, Korea were investigated on a seasonal basis from February to November, 2015. Total catches consisted of 44 species and 35 families. They were 13 species of fish, 10 species of crustacea, 5 species of echinodermata, 5 species of gastropoda, 4 species of cephalopoda and 3 species of bivalvia. Major catch species was shellfish and had seasonal variations in catch. In spring and winter, the catch of ark shell (Scapharca broughtonii) was increased. Adversely, the catch of admas venus clam (Callithaca adamsi) increased in sunmmer and autumn. Species diversity indices was high as the value of 1.99 in spring, and low to the value of 0.34 in summer. In addition, multi dimentional scaling (MDS) indices also was high in spring as the value of 1.99. In summer, the index was low as the value of 0.34. Similarity analysis based on species data was transformed by fourth root. With the result of cluster analysis and MDS analysis, species was divided into two groups. The first group as Group A consists of winter and spring species and another was Group B made of species in summer and winter.

• 대한미생물학회지
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• 제35권1호
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• pp.69-76
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• 2000

Members of the genus Acinetobacter are recognized as newer pathogens of the nosocomial infection with an increasing frequency in recent years. Strains that belonged to A. calcoaceticus A. baumannii complex (genomic species 1, 2, 3, and 13TU) were major groups associated with nosocomial infection. Phenotypic identification was unreliable and laborious method to classify Acinetobacter strains into 19 genomic species. Rapid and reliable identification of clinical isolates is essential to diagnosis and epidemiology of Acinetobacter. We investigated the suitability of amplified ribosomal DNA restriction analysis (ARDRA) to identify genomic species of 131 Acinetobacter isolates. The 16S rRNA genes (ribosomal DNA) were enzymatically amplified and the amplified PCR products were restricted independently with the enzymes, AluI, CfoI, and MboI. Genomic species of Acinetobacter was classified by the combinations of restriction patterns. The analysis was showed that restriction profiles were characteristic for each genomic species. One hundred fourteen isolates were identified as A. baumannii, twelve were identified as genomic species 13TU, and one was identified as genomic species 3. Four isolates were found to be unknown organisms. All of the isolates which were identified to A. baumannii by phenotypic tests were completely discriminated into A. baumannii and genomic species 13TU by ARDRA. This study demonstrates that ARDRA is a rapid and simple techniques for the identification of Acinetobacter species according to the genomic species.

• 한국자원식물학회지
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• 제17권2호
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• pp.82-93
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• 2004

국내에 자생하는 두릅나무과 식물의 형태적 분류를 재확인하고, 분자적 방법에 의해 속 및 종간 유연 관계를 파악해 보고자 PCR-RAPD 와 ITS sequence 분석을 실시하였다. 채집된 오갈피과 식물을 이용하여 PCR-RAPD를 실시한 결과 속과 종을 구분할 수 있는 다양한 polymorphic 밴드를 관찰할 수 있었다. 또한 실험에 이용한 두릅나무 개체군 내에서 다양한 쓱 변이가 있음을 확인할 수 있었고, 인삼에서는 재배종 내의 변이는 관찰되지 않았으나 야생종과 재배종간의 유전적 차이가 존재함을 확인할 수 있는 밴드들이 나타났다. ITS분석에서는 각각의 속과 종만이 지니는 특이 염기 서열이 나타나 ITS를 이용한 속과 종 분류가 가능하였다. ITS 염기서열로 작성한 계통수를 분석 한 결과 오갈피속은 음나무속과 근연임을 알 수 있었고, 두릅속과 인삼속이 하나의 계통이며 송악은 다른 속과 명료하게 구분됨을 확인하였다. 두릅속과 인삼속이 근연관계임은 RAPD 결과에서도 확인되었다. 인삼은 RAPD 분석 결과 재배종과 야생종 사이에 변이가 존재함이 관찰되었으나, ITS 분석 결과에서는 야생종과 재배종간의 변이를 관찰 할 수 있는 결과가 나타나지 않았다. 또한 RAPD와 ITS 분석 결과 모두 지역에 따른 재배종 인삼의 유전적 차이도 관찰되지 않았다. 이를 통해 국내에서 재배중인 인삼이 단계통임을 알 수 있었다. ITS 분석에서는 속과 종 수준의 분류가 가능한 특이 염기 서열들이 관찰되었다.

• Journal of Forest and Environmental Science
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• 제28권4호
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• pp.199-204
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• 2012

This study was conducted to estimate climax index by eco-morphology for major 36 tree and sub-tree species in natural deciduous forests so as to interpret seral position of each species in the forest community. Fourteen eco-morphological characters which were considered to be associated with successional gradient in the forest were selected for the study. Four levels per character for each species were given on a standardized scale of increasing climax, and the index was computed by the proportion of the sum of total scores, expressed by percent values. With calculated mean value of 54.8 for all indices, Carpinus cordata had the highest index value of 90.5, and Populus davidiana recorded the lowest of 13.2. The most climax group, greater than 70 of the index, contained only 8 species, intermediate group, between 41 to 70 of the index, had 23 species, and the most pioneer group, less than 40 of the index comprised 5 species. The result has noticed that the large number of species would take advantage of most diverse resource and niche in the intermediate stage of the sere in the forest. By cluster analysis all 36 species were subjected to be classified into several species groups which had common similar eco-morphological characteristics. The indices were additionally plotted on the two dimensional graph to recognize the positions related to the light absorption factor and reproduction factor. The climax index of tree and sub-tree species developed by this study could be applied to understand the present status of successional stage on the basis of species composition by the method of summing up the indices. And comparison of forest successional stage among various forest communities could be done by summing up the climax indices of composed species in each community. However, this kind of applied methodology should be limited to the forest of similar species composition and site condition.

• 식물병연구
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• 제11권1호
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• pp.56-65
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• 2005

이 연구는 Alternaria속 균류 중에서 분생포자의 형태가 유사하여 분류, 동정이 매우 어려운 소형의 포자를 형성하는 11종의 Alternaria의 종간 유연관계와 분류체계를 확립하기 위하여 공시균들의 ribosomal DNA의 ITS 및 미토콘드리아 small submit 영역의 염기서열 분석, 그리고 URP primer에 의한 핵산지문분석을 실시하였다. 소형의 포자를 형성하는 11종 Alternaria속의 rDNA internal transcribed spacer(ITS) 영역과 미토콘드리아 small submit rDNA 의 염기서열을 분석하였던 바 A. infectoria를 제외한 10종의 Alternaria에서 100%의 상동성을 나타내었다. 이는 공시한 10종의 Alternaria가 유전적으로 매우 근연의 관계에 있음을 나타내며, 이 marker는 공시균들의 종구분에 이용할 수 없음을 나타내는 것이다. URP primer 10종을 공시하여 소형의 포자를 형성하는 Alternaria 균류의 핵산지문분석을 실시한 결과, 개개의 primer 로는 종간의 구분이 불가능하였으나 여러개의 primer를 종합하여 UPGMA분석을 실시할 경우 비록 종간 유사도는 높았디만 각각의 종은 독립된 cluster를 형성하여 종간 구별이 가능하였다. 자리공에서 분리한 Alternaria sp.는 URP-PCR 핵산지문 분석 결과 다른 Alternaria 종들과 차이가 인정됨으로 이 균은 미기록인 신종의 Alternaria로 사료되었다. A.infectoria는 다른 Alternaria 종들과 ITS 분석 및 URP-PCR 핵산지문분석에서 큰 차이를 보임으로서 뚜렷이 구별되는 종으로 판단되었다.

• 응용통계연구
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• 제34권6호
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• pp.945-956
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• 2021

본 연구에서는 가중주성분분석으로부터 정준대응분석을 유도하는 Legendre와 Legendre (2012)의 알고리즘을 고찰하였다. 그리고, 가중주성분분석에 기반한 Legendre와 Legendre (2012)의 정준대응분석이 가우시안 반응모형에 기초한 Ter Braak (1986)의 정준대응분석과 동일함을 다루었다. 생태학에서 종의 발현 정도를 잘 설명할 수 있는 가우시안 반응곡선에서 도출된 Ter Braak (1986)의 정준대응분석은 종 패킹 모형(species packing model)이라는 기본 가정을 사용한 후 일반화선형모형과 정준상관분석을 결합시키는 방법으로 도출된다. 그런데 Legendre와 Legendre (2012)의 알고리즘은 이러한 가정없이 Benzecri의 대응분석과 상당히 유사한 방법으로 계산되는 특징을 지닌다. 그러므로 가중주성분석에 기초한 정준대응분석을 사용하면, 결과물 활용에 약간의 유연성을 지닐 수 있게 된다. 결론적으로 본 연구에서는 서로 다른 모형에서 출발한 두 방법이 장소점수(site score), 종 점수(species score) 그리고 환경변수와의 상관관계가 서로 동일함을 보인다.

• 생태와환경
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• 제43권4호
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• pp.503-512
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• 2010

This study was conducted to evaluate fish fauna, species composition, and various guilds against stream orders along with analysis of fish community structure and diversity in Geum River watershed from 2005 to 2007. The total number of fish collected was 4,216 representing 12 families with 56 species. Zacco platypus was the most abundant fish species with 26% in relative abundance (RA). Korean endemic species were 24 species including Zacco koreanus, Microphysogobio yaluensis, Gobiobotia nakdongensis, and Iksookimia koreensis, etc. We also collected endangered fish species such as G. nakdongensis, Liobagrus obesus, and Pseudopungtungia nigra, etc., and their new distribution sites were found in the survey, providing some sites of the fish conservation and protection. Fish tolerance and trophic guilds analysis showed that the proportion of sensitive species, intermediate species, and tolerant species were 33.4%, 29.3%, and 37.3%, respectively and omnivores and insectivores were 48.1 % and 38.4%, respectively. Analysis of site-base study indicated that tolerant species and omnivore species were high in some polluted tributary streams (i.e., Gap and Miho stream) and sensitive and insectivore species were low. In the functional relations, expressed as simple linear regression equations, of stream order on fish metric attributes, showed that the number of species and the number of individuals increased as the stream order increases. This phenomenon was explained by greater availability of stable water volume, rich food, and higher physical habitat capacity. Such guild compositions and stream order characteristics of the river influenced the community structures, based on species diversity, dominance and evenness index in the study. This study may be used as important data in the future for comparisons of fish fauna and compositions before and after two weir (dam) constructions in the middle of Geum River by the government.

• 한국발생생물학회지:발생과생식
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• 제12권2호
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• pp.151-158
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• 2008

The variability within and between Korean pond-smelt (Hypomesus nipponensis; KPS) and Canadian capelin (Mallotus villosus; CCP) were studied in order to clarify the genetic distances and differences. The dendrogram obtained by the seven primers indicates cluster 1 (KOREAN 01$\sim$KOREAN 11) and cluster 2 (CANADIAN 12$\sim$CANADIAN 22). The longest genetic distance displaying significant molecular differences was found to exist between individuals in the two geographic species of Osmeridae, between individuals' no. 10 of Korean and no. 18 of Canadian (0.686). 121 unique shared loci to each species, with an average of 17.3 per primer, were observed in the KPS species, and 264 loci, with an average of 37.7 per primer, were observed in the CCP species. 77 shared loci by the two species, with an average of 11.0 per primer, were observed in the two fish species. RAPD analysis showed that the KPS species was more genetically diverse than the CCP species. KPS species may have high levels of genomic DNA variability owing to the introduction of the wild individuals from the other sites to sampling sites although it may be the geographically diverse distribution of this species. As stated above, the existence of species discrimination and genetic variability between the KPS and the CCP species was identified by RAPD analysis.